RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 LCE2BO14633 110 aa4.1□□□□□ -1.75
USP48-203ENST00000374732 EPPK1P58107 5090 aaKnown RBP4.1□□□□□ -1.75
USP48-203ENST00000374732 INE1O15225 51 aa4.08□□□□□ -1.76
USP48-203ENST00000374732 PKHD1P08F94 4074 aa4.08□□□□□ -1.76
USP48-203ENST00000374732 XP32Q5T750 250 aa4.06□□□□□ -1.76
USP48-203ENST00000374732 PKHD1L1Q86WI1 4243 aa4.05□□□□□ -1.76
USP48-203ENST00000374732 TENM2Q9NT68 2774 aa4.05□□□□□ -1.76
USP48-203ENST00000374732 LRP1BQ9NZR2 4599 aa4.05□□□□□ -1.76
USP48-203ENST00000374732 RPL37P61927 97 aaKnown RBP4.05□□□□□ -1.76
USP48-203ENST00000374732 RYR1P21817 5038 aa4.02□□□□□ -1.77
USP48-203ENST00000374732 KRTAP13-3Q3SY46 172 aa4.01□□□□□ -1.77
USP48-203ENST00000374732 PCLOQ9Y6V0 5065 aa4.01□□□□□ -1.77
USP48-203ENST00000374732 KRTAP10-2P60368 255 aa4□□□□□ -1.77
USP48-203ENST00000374732 TGP01266 2768 aa4□□□□□ -1.77
USP48-203ENST00000374732 DNAH8Q96JB1 4490 aa4□□□□□ -1.77
USP48-203ENST00000374732 HYDINQ4G0P3 5121 aa4□□□□□ -1.77
USP48-203ENST00000374732 DMBT1Q9UGM3 2413 aaPredicted RBP3.99□□□□□ -1.77
USP48-203ENST00000374732 PKD1P98161 4303 aa3.99□□□□□ -1.77
USP48-203ENST00000374732 KRTAP10-1P60331 282 aa3.97□□□□□ -1.77
USP48-203ENST00000374732 COX6B2Q6YFQ2 88 aa3.95□□□□□ -1.78
USP48-203ENST00000374732 DNAH5Q8TE73 4624 aa3.94□□□□□ -1.78
USP48-203ENST00000374732 KRTAP13-2Q52LG2 175 aa3.93□□□□□ -1.78
USP48-203ENST00000374732 KRTAP1-4P0C5Y4 121 aa3.92□□□□□ -1.78
USP48-203ENST00000374732 HSPG2P98160 4391 aa3.92□□□□□ -1.78
USP48-203ENST00000374732 IGKV2-30P06310 120 aa3.91□□□□□ -1.78
USP48-203ENST00000374732 KRTAP12-2P59991 146 aa3.91□□□□□ -1.78
USP48-203ENST00000374732 APOBP04114 4563 aaKnown RBP3.91□□□□□ -1.78
USP48-203ENST00000374732 IGKV2D-30A0A075B6S6 120 aa3.9□□□□□ -1.79
USP48-203ENST00000374732 RPS29P62273 56 aaKnown RBP3.89□□□□□ -1.79
USP48-203ENST00000374732 SPINK6Q6UWN8 80 aa3.89□□□□□ -1.79
USP48-203ENST00000374732 A0A0D9SG42 100 aa3.89□□□□□ -1.79
USP48-203ENST00000374732 KIAA1109Q2LD37 5005 aa3.88□□□□□ -1.79
USP48-203ENST00000374732 LORP23490 312 aaPredicted RBP3.87□□□□□ -1.79
USP48-203ENST00000374732 ABCA13Q86UQ4 5058 aa3.84□□□□□ -1.79
USP48-203ENST00000374732 PP632Q6XCG6 107 aa3.84□□□□□ -1.79
USP48-203ENST00000374732 FAT1Q14517 4588 aa3.84□□□□□ -1.8
USP48-203ENST00000374732 Q5VSD8 79 aa3.82□□□□□ -1.8
USP48-203ENST00000374732 KRTAP4-5Q9BYR2 181 aa3.81□□□□□ -1.8
USP48-203ENST00000374732 S4R3F8 94 aa3.81□□□□□ -1.8
USP48-203ENST00000374732 KRTAP10-4P60372 401 aaPredicted RBP3.8□□□□□ -1.8
USP48-203ENST00000374732 FAT3Q8TDW7 4589 aa3.78□□□□□ -1.8
USP48-203ENST00000374732 MYCBP2O75592 4640 aa3.75□□□□□ -1.81
USP48-203ENST00000374732 SMR3BP02814 79 aaPredicted RBP3.74□□□□□ -1.81
USP48-203ENST00000374732 KRTAP13-4Q3LI77 160 aa3.72□□□□□ -1.81
USP48-203ENST00000374732 TNXBP22105 4242 aa3.71□□□□□ -1.82
USP48-203ENST00000374732 HMCN2Q8NDA2 5059 aa3.67□□□□□ -1.82
USP48-203ENST00000374732 MT1HL1P0DM35 61 aa3.66□□□□□ -1.82
USP48-203ENST00000374732 C9orf92A6NGG3 77 aa3.64□□□□□ -1.83
USP48-203ENST00000374732 MUC17Q685J3 4493 aa3.63□□□□□ -1.83
USP48-203ENST00000374732 SPRR5A0A1B0GTR4 108 aa3.61□□□□□ -1.83
USP48-203ENST00000374732 HERC1Q15751 4861 aa3.61□□□□□ -1.83
USP48-203ENST00000374732 KRTAP12-1P59990 96 aa3.6□□□□□ -1.83
USP48-203ENST00000374732 KRTAP10-6P60371 365 aaPredicted RBP3.58□□□□□ -1.84
USP48-203ENST00000374732 LRP1Q07954 4544 aaKnown RBP3.49□□□□□ -1.85
USP48-203ENST00000374732 KRTAP9-6A0A140TA67 174 aa3.46□□□□□ -1.86
USP48-203ENST00000374732 KRTAP2-2Q9BYT5 123 aa3.44□□□□□ -1.86
USP48-203ENST00000374732 LOC100996750A0A140TA64 210 aa3.43□□□□□ -1.86
USP48-203ENST00000374732 KRTAP9-2Q9BYQ4 174 aa3.43□□□□□ -1.86
USP48-203ENST00000374732 KRTAP4-6Q9BYQ5 205 aa3.43□□□□□ -1.86
USP48-203ENST00000374732 LCE5AQ5TCM9 118 aa3.37□□□□□ -1.87
USP48-203ENST00000374732 RNF213Q63HN8 5207 aa3.36□□□□□ -1.87
USP48-203ENST00000374732 FAT4Q6V0I7 4981 aa3.35□□□□□ -1.87
USP48-203ENST00000374732 M0QZ58 72 aa3.3□□□□□ -1.88
USP48-203ENST00000374732 LRP2P98164 4655 aa3.28□□□□□ -1.88
USP48-203ENST00000374732 CRCT1Q9UGL9 99 aa3.26□□□□□ -1.89
USP48-203ENST00000374732 UBR4Q5T4S7 5183 aa3.26□□□□□ -1.89
USP48-203ENST00000374732 LPAP08519 4548 aa3.25□□□□□ -1.89
USP48-203ENST00000374732 LCE1FQ5T754 118 aa3.25□□□□□ -1.89
USP48-203ENST00000374732 KRTAP10-10P60014 251 aa3.24□□□□□ -1.89
USP48-203ENST00000374732 KRTAP19-2Q3LHN2 52 aa3.22□□□□□ -1.89
USP48-203ENST00000374732 KRTAP4-1Q9BYQ7 146 aa3.22□□□□□ -1.89
USP48-203ENST00000374732 LCE1AQ5T7P2 110 aa3.22□□□□□ -1.89
USP48-203ENST00000374732 LCE1EQ5T753 118 aa3.2□□□□□ -1.9
USP48-203ENST00000374732 KRTAP9-4Q9BYQ2 154 aa3.13□□□□□ -1.91
USP48-203ENST00000374732 MT1HP80294 61 aa3.11□□□□□ -1.91
USP48-203ENST00000374732 KRTAP6-3Q3LI67 103 aa3.1□□□□□ -1.91
USP48-203ENST00000374732 FLGP20930 4061 aaPredicted RBP3.08□□□□□ -1.92
USP48-203ENST00000374732 LCE3CQ5T5A8 94 aa3.06□□□□□ -1.92
USP48-203ENST00000374732 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.05□□□□□ -1.92
USP48-203ENST00000374732 LCE1DQ5T752 114 aa3.04□□□□□ -1.92
USP48-203ENST00000374732 KRTAP9-7A8MTY7 169 aa3.04□□□□□ -1.92
USP48-203ENST00000374732 KRTAP4-8Q9BYQ9 185 aa3.03□□□□□ -1.92
USP48-203ENST00000374732 SSPOA2VEC9 5147 aa3.01□□□□□ -1.93
USP48-203ENST00000374732 TNP1P09430 55 aa2.98□□□□□ -1.93
USP48-203ENST00000374732 SPRR2GQ9BYE4 73 aa2.98□□□□□ -1.93
USP48-203ENST00000374732 KRTAP19-6Q3LI70 58 aa2.98□□□□□ -1.93
USP48-203ENST00000374732 LCE4AQ5TA78 99 aa2.95□□□□□ -1.94
USP48-203ENST00000374732 KRTAP9-9Q9BYP9 154 aa2.95□□□□□ -1.94
USP48-203ENST00000374732 MUC2Q02817 5179 aa2.94□□□□□ -1.94
USP48-203ENST00000374732 KRTAP9-8Q9BYQ0 159 aa2.94□□□□□ -1.94
USP48-203ENST00000374732 KRTAP19-4Q3LI73 84 aa2.93□□□□□ -1.94
USP48-203ENST00000374732 KRTAP12-4P60329 112 aa2.92□□□□□ -1.94
USP48-203ENST00000374732 KRTAP19-1Q8IUB9 90 aa2.92□□□□□ -1.94
USP48-203ENST00000374732 M0R2T5 61 aa2.91□□□□□ -1.94
USP48-203ENST00000374732 MT2AP02795 61 aa2.89□□□□□ -1.95
USP48-203ENST00000374732 KRTAP9-3Q9BYQ3 159 aa2.88□□□□□ -1.95
USP48-203ENST00000374732 MT1FP04733 61 aa2.87□□□□□ -1.95
USP48-203ENST00000374732 KRTAP19-8Q3LI54 63 aa2.87□□□□□ -1.95
USP48-203ENST00000374732 LCE3EQ5T5B0 92 aa2.87□□□□□ -1.95
USP48-203ENST00000374732 LCE3BQ5TA77 95 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms