RNA–Protein interactions for RNA: ENST00000374481.7

CD28-202, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 4,526 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-202ENST00000374481 FRAS1Q86XX4 4008 aa4.84□□□□□ -1.64
CD28-202ENST00000374481 DNAH1Q9P2D7 4330 aa4.81□□□□□ -1.64
CD28-202ENST00000374481 DNAH9Q9NYC9 4486 aa4.79□□□□□ -1.64
CD28-202ENST00000374481 DNAH3Q8TD57 4116 aa4.78□□□□□ -1.64
CD28-202ENST00000374481 ALMS1Q8TCU4 4167 aa4.76□□□□□ -1.65
CD28-202ENST00000374481 PLECQ15149 4684 aaKnown RBP4.75□□□□□ -1.65
CD28-202ENST00000374481 VPS13DQ5THJ4 4388 aa4.68□□□□□ -1.66
CD28-202ENST00000374481 PRKDCP78527 4128 aaKnown RBP4.67□□□□□ -1.66
CD28-202ENST00000374481 DNAH8Q96JB1 4490 aa4.67□□□□□ -1.66
CD28-202ENST00000374481 DNAH17Q9UFH2 4485 aa4.66□□□□□ -1.66
CD28-202ENST00000374481 STARD9Q9P2P6 4700 aa4.63□□□□□ -1.67
CD28-202ENST00000374481 KRTAP23-1A1A580 65 aa4.62□□□□□ -1.67
CD28-202ENST00000374481 DYNC2H1Q8NCM8 4307 aaKnown RBP4.62□□□□□ -1.67
CD28-202ENST00000374481 KRTAP17-1Q9BYP8 105 aa4.58□□□□□ -1.68
CD28-202ENST00000374481 LCE2CQ5TA81 110 aa4.57□□□□□ -1.68
CD28-202ENST00000374481 DNAH11Q96DT5 4516 aa4.56□□□□□ -1.68
CD28-202ENST00000374481 FAT2Q9NYQ8 4349 aa4.56□□□□□ -1.68
CD28-202ENST00000374481 DNAH2Q9P225 4427 aa4.55□□□□□ -1.68
CD28-202ENST00000374481 HECTD4Q9Y4D8 3996 aa4.55□□□□□ -1.68
CD28-202ENST00000374481 KMT2CQ8NEZ4 4911 aaKnown RBP4.54□□□□□ -1.68
CD28-202ENST00000374481 KMT2AQ03164 3969 aa4.54□□□□□ -1.68
CD28-202ENST00000374481 LCE2BO14633 110 aa4.53□□□□□ -1.68
CD28-202ENST00000374481 HYDINQ4G0P3 5121 aa4.52□□□□□ -1.69
CD28-202ENST00000374481 LRP1BQ9NZR2 4599 aa4.48□□□□□ -1.69
CD28-202ENST00000374481 KRTAP10-4P60372 401 aaPredicted RBP4.47□□□□□ -1.69
CD28-202ENST00000374481 KRTAP4-5Q9BYR2 181 aa4.47□□□□□ -1.69
CD28-202ENST00000374481 LORP23490 312 aaPredicted RBP4.46□□□□□ -1.69
CD28-202ENST00000374481 DNAH5Q8TE73 4624 aa4.44□□□□□ -1.7
CD28-202ENST00000374481 DNAH6Q9C0G6 4158 aa4.43□□□□□ -1.7
CD28-202ENST00000374481 KRTAP10-10P60014 251 aa4.43□□□□□ -1.7
CD28-202ENST00000374481 RYR3Q15413 4870 aa4.42□□□□□ -1.7
CD28-202ENST00000374481 PKHD1P08F94 4074 aa4.41□□□□□ -1.7
CD28-202ENST00000374481 VPS13BQ7Z7G8 4022 aa4.39□□□□□ -1.71
CD28-202ENST00000374481 LCE2AQ5TA79 106 aaPredicted RBP4.37□□□□□ -1.71
CD28-202ENST00000374481 BIRC6Q9NR09 4857 aa4.36□□□□□ -1.71
CD28-202ENST00000374481 LCE3AQ5TA76 89 aa4.34□□□□□ -1.71
CD28-202ENST00000374481 SACSQ9NZJ4 4579 aa4.32□□□□□ -1.72
CD28-202ENST00000374481 DYNC1H1Q14204 4646 aaKnown RBP4.3□□□□□ -1.72
CD28-202ENST00000374481 KRTAP12-3P60328 96 aa4.29□□□□□ -1.72
CD28-202ENST00000374481 FAT1Q14517 4588 aa4.29□□□□□ -1.72
CD28-202ENST00000374481 MT1HL1P0DM35 61 aa4.25□□□□□ -1.73
CD28-202ENST00000374481 PKD1P98161 4303 aa4.25□□□□□ -1.73
CD28-202ENST00000374481 KRTAP9-6A0A140TA67 174 aa4.23□□□□□ -1.73
CD28-202ENST00000374481 KRTAP10-12P60413 245 aa4.23□□□□□ -1.73
CD28-202ENST00000374481 SPRR5A0A1B0GTR4 108 aa4.21□□□□□ -1.74
CD28-202ENST00000374481 EPPK1P58107 5090 aaKnown RBP4.21□□□□□ -1.74
CD28-202ENST00000374481 APOBP04114 4563 aaKnown RBP4.14□□□□□ -1.75
CD28-202ENST00000374481 HSPG2P98160 4391 aa4.12□□□□□ -1.75
CD28-202ENST00000374481 KRTAP9-2Q9BYQ4 174 aa4.11□□□□□ -1.75
CD28-202ENST00000374481 PKHD1L1Q86WI1 4243 aa4.1□□□□□ -1.75
CD28-202ENST00000374481 FAT3Q8TDW7 4589 aa4.1□□□□□ -1.75
CD28-202ENST00000374481 CRCT1Q9UGL9 99 aa4.09□□□□□ -1.75
CD28-202ENST00000374481 RYR1P21817 5038 aa4.08□□□□□ -1.76
CD28-202ENST00000374481 LRP1Q07954 4544 aaKnown RBP4.08□□□□□ -1.76
CD28-202ENST00000374481 MYCBP2O75592 4640 aa4.06□□□□□ -1.76
CD28-202ENST00000374481 ABCA13Q86UQ4 5058 aa4.04□□□□□ -1.76
CD28-202ENST00000374481 PCLOQ9Y6V0 5065 aa4.03□□□□□ -1.76
CD28-202ENST00000374481 MUC2Q02817 5179 aa4.03□□□□□ -1.76
CD28-202ENST00000374481 KRTAP8-1Q8IUC2 63 aa4.02□□□□□ -1.77
CD28-202ENST00000374481 RYR2Q92736 4967 aa3.99□□□□□ -1.77
CD28-202ENST00000374481 HERC2O95714 4834 aa3.98□□□□□ -1.77
CD28-202ENST00000374481 LPAP08519 4548 aa3.97□□□□□ -1.77
CD28-202ENST00000374481 TNXBP22105 4242 aa3.96□□□□□ -1.78
CD28-202ENST00000374481 KRTAP4-1Q9BYQ7 146 aa3.94□□□□□ -1.78
CD28-202ENST00000374481 HERC1Q15751 4861 aa3.92□□□□□ -1.78
CD28-202ENST00000374481 KRTAP10-5P60370 271 aa3.92□□□□□ -1.78
CD28-202ENST00000374481 KIAA1109Q2LD37 5005 aa3.91□□□□□ -1.78
CD28-202ENST00000374481 LRP2P98164 4655 aa3.89□□□□□ -1.79
CD28-202ENST00000374481 SPRR2GQ9BYE4 73 aa3.89□□□□□ -1.79
CD28-202ENST00000374481 RNF213Q63HN8 5207 aa3.85□□□□□ -1.79
CD28-202ENST00000374481 LCE3CQ5T5A8 94 aa3.85□□□□□ -1.79
CD28-202ENST00000374481 KRTAP9-7A8MTY7 169 aa3.82□□□□□ -1.8
CD28-202ENST00000374481 KRTAP19-5Q3LI72 72 aa3.76□□□□□ -1.81
CD28-202ENST00000374481 UBR4Q5T4S7 5183 aa3.72□□□□□ -1.81
CD28-202ENST00000374481 KRTAP19-1Q8IUB9 90 aa3.71□□□□□ -1.82
CD28-202ENST00000374481 FAT4Q6V0I7 4981 aa3.71□□□□□ -1.82
CD28-202ENST00000374481 MT1HP80294 61 aa3.69□□□□□ -1.82
CD28-202ENST00000374481 KRTAP12-4P60329 112 aa3.69□□□□□ -1.82
CD28-202ENST00000374481 KRTAP19-2Q3LHN2 52 aa3.68□□□□□ -1.82
CD28-202ENST00000374481 MT2AP02795 61 aa3.67□□□□□ -1.82
CD28-202ENST00000374481 KRTAP10-7P60409 375 aaPredicted RBP3.65□□□□□ -1.83
CD28-202ENST00000374481 MT1FP04733 61 aa3.64□□□□□ -1.83
CD28-202ENST00000374481 KRTAP20-1Q3LI63 56 aa3.63□□□□□ -1.83
CD28-202ENST00000374481 MUC17Q685J3 4493 aa3.59□□□□□ -1.84
CD28-202ENST00000374481 MT1XP80297 61 aa3.58□□□□□ -1.84
CD28-202ENST00000374481 KRTAP19-8Q3LI54 63 aa3.56□□□□□ -1.84
CD28-202ENST00000374481 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.55□□□□□ -1.84
CD28-202ENST00000374481 HMCN2Q8NDA2 5059 aa3.55□□□□□ -1.84
CD28-202ENST00000374481 KRTAP19-4Q3LI73 84 aa3.55□□□□□ -1.84
CD28-202ENST00000374481 FLGP20930 4061 aaPredicted RBP3.54□□□□□ -1.84
CD28-202ENST00000374481 SPRR2EP22531 72 aa3.49□□□□□ -1.85
CD28-202ENST00000374481 SPRR2BP35325 72 aa3.49□□□□□ -1.85
CD28-202ENST00000374481 SPRR2AP35326 72 aa3.49□□□□□ -1.85
CD28-202ENST00000374481 SPRR2FQ96RM1 72 aa3.48□□□□□ -1.85
CD28-202ENST00000374481 KRTAP6-3Q3LI67 103 aa3.48□□□□□ -1.85
CD28-202ENST00000374481 MT1BP07438 61 aa3.47□□□□□ -1.85
CD28-202ENST00000374481 SYNE1Q8NF91 8797 aaKnown RBP3.45□□□□□ -1.86
CD28-202ENST00000374481 KRTAP2-3P0C7H8 128 aa3.42□□□□□ -1.86
CD28-202ENST00000374481 SPRR2DP22532 72 aa3.42□□□□□ -1.86
CD28-202ENST00000374481 KRTAP2-4Q9BYR9 128 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms