RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 HYDINQ4G0P3 5121 aa3.06□□□□□ -1.92
ATG4A-204ENST00000372246 KRTAP13-2Q52LG2 175 aa3.05□□□□□ -1.92
ATG4A-204ENST00000372246 DNAH5Q8TE73 4624 aa3.05□□□□□ -1.92
ATG4A-204ENST00000372246 UQCR11O14957 56 aa3.04□□□□□ -1.92
ATG4A-204ENST00000372246 IGLV7-43P04211 117 aa3.04□□□□□ -1.92
ATG4A-204ENST00000372246 P0C880 135 aa3.04□□□□□ -1.92
ATG4A-204ENST00000372246 DMBT1Q9UGM3 2413 aaPredicted RBP3.04□□□□□ -1.92
ATG4A-204ENST00000372246 VPS13BQ7Z7G8 4022 aa3.04□□□□□ -1.92
ATG4A-204ENST00000372246 KRTAP16-1A8MUX0 517 aa3.03□□□□□ -1.92
ATG4A-204ENST00000372246 SEC61BP60468 96 aaKnown RBP3.03□□□□□ -1.92
ATG4A-204ENST00000372246 TYMSOSQ8TAI1 123 aa3.03□□□□□ -1.92
ATG4A-204ENST00000372246 H0YAA0 97 aa3.01□□□□□ -1.93
ATG4A-204ENST00000372246 KRTAP25-1Q3LHN0 102 aa3□□□□□ -1.93
ATG4A-204ENST00000372246 Q6ZSA8 131 aa3□□□□□ -1.93
ATG4A-204ENST00000372246 KRTAP9-8Q9BYQ0 159 aa3□□□□□ -1.93
ATG4A-204ENST00000372246 PKHD1P08F94 4074 aa3□□□□□ -1.93
ATG4A-204ENST00000372246 C9orf92A6NGG3 77 aa2.99□□□□□ -1.93
ATG4A-204ENST00000372246 LY6G6CO95867 125 aa2.98□□□□□ -1.93
ATG4A-204ENST00000372246 LINC00304Q8N9R0 145 aa2.98□□□□□ -1.93
ATG4A-204ENST00000372246 PKD1P98161 4303 aa2.96□□□□□ -1.93
ATG4A-204ENST00000372246 NUPR2A6NF83 97 aa2.96□□□□□ -1.94
ATG4A-204ENST00000372246 KRTAP10-1P60331 282 aa2.96□□□□□ -1.94
ATG4A-204ENST00000372246 SSBP3-AS1Q7Z2R9 100 aa2.96□□□□□ -1.94
ATG4A-204ENST00000372246 KRTAP1-4P0C5Y4 121 aa2.95□□□□□ -1.94
ATG4A-204ENST00000372246 A8MUU9 505 aa2.95□□□□□ -1.94
ATG4A-204ENST00000372246 C20orf166-AS1Q96NR2 134 aa2.95□□□□□ -1.94
ATG4A-204ENST00000372246 FAT1Q14517 4588 aa2.94□□□□□ -1.94
ATG4A-204ENST00000372246 SMR3BP02814 79 aaPredicted RBP2.92□□□□□ -1.94
ATG4A-204ENST00000372246 A0A1B0GU33 70 aa2.92□□□□□ -1.94
ATG4A-204ENST00000372246 A0A0D9SG42 100 aa2.91□□□□□ -1.94
ATG4A-204ENST00000372246 LUZP6Q538Z0 58 aa2.91□□□□□ -1.94
ATG4A-204ENST00000372246 C10orf95Q9H7T3 257 aa2.9□□□□□ -1.94
ATG4A-204ENST00000372246 MYCBP2O75592 4640 aa2.9□□□□□ -1.95
ATG4A-204ENST00000372246 H1FX-AS1Q4G0G2 97 aa2.89□□□□□ -1.95
ATG4A-204ENST00000372246 NDUFAF8A1L188 74 aa2.88□□□□□ -1.95
ATG4A-204ENST00000372246 K7ERS5 55 aa2.88□□□□□ -1.95
ATG4A-204ENST00000372246 KRTAP13-4Q3LI77 160 aa2.88□□□□□ -1.95
ATG4A-204ENST00000372246 COX6B2Q6YFQ2 88 aa2.88□□□□□ -1.95
ATG4A-204ENST00000372246 LPAP08519 4548 aa2.86□□□□□ -1.95
ATG4A-204ENST00000372246 LRP1Q07954 4544 aaKnown RBP2.86□□□□□ -1.95
ATG4A-204ENST00000372246 TPRXLQ17RH7 258 aa2.86□□□□□ -1.95
ATG4A-204ENST00000372246 HSPG2P98160 4391 aa2.86□□□□□ -1.95
ATG4A-204ENST00000372246 DYNC1H1Q14204 4646 aaKnown RBP2.84□□□□□ -1.95
ATG4A-204ENST00000372246 SACSQ9NZJ4 4579 aa2.84□□□□□ -1.95
ATG4A-204ENST00000372246 GPR98Q8WXG9 6306 aa2.83□□□□□ -1.96
ATG4A-204ENST00000372246 SPINT4Q6UDR6 99 aa2.82□□□□□ -1.96
ATG4A-204ENST00000372246 LCE1AQ5T7P2 110 aa2.82□□□□□ -1.96
ATG4A-204ENST00000372246 APOBP04114 4563 aaKnown RBP2.82□□□□□ -1.96
ATG4A-204ENST00000372246 PKHD1L1Q86WI1 4243 aa2.82□□□□□ -1.96
ATG4A-204ENST00000372246 KRTAP10-6P60371 365 aaPredicted RBP2.81□□□□□ -1.96
ATG4A-204ENST00000372246 KRTAP10-8P60410 259 aa2.81□□□□□ -1.96
ATG4A-204ENST00000372246 FAT3Q8TDW7 4589 aa2.79□□□□□ -1.96
ATG4A-204ENST00000372246 KRTAP12-2P59991 146 aa2.77□□□□□ -1.97
ATG4A-204ENST00000372246 RPL37P61927 97 aaKnown RBP2.77□□□□□ -1.97
ATG4A-204ENST00000372246 KMT2CQ8NEZ4 4911 aaKnown RBP2.76□□□□□ -1.97
ATG4A-204ENST00000372246 BIRC6Q9NR09 4857 aa2.74□□□□□ -1.97
ATG4A-204ENST00000372246 RYR1P21817 5038 aa2.73□□□□□ -1.97
ATG4A-204ENST00000372246 CAMK2N1Q7Z7J9 78 aa2.73□□□□□ -1.97
ATG4A-204ENST00000372246 S4R3F8 94 aa2.73□□□□□ -1.97
ATG4A-204ENST00000372246 LRP2P98164 4655 aa2.73□□□□□ -1.97
ATG4A-204ENST00000372246 KRTAP10-4P60372 401 aaPredicted RBP2.72□□□□□ -1.97
ATG4A-204ENST00000372246 TNXBP22105 4242 aa2.7□□□□□ -1.98
ATG4A-204ENST00000372246 RYR3Q15413 4870 aa2.69□□□□□ -1.98
ATG4A-204ENST00000372246 KRTAP12-1P59990 96 aa2.69□□□□□ -1.98
ATG4A-204ENST00000372246 ABCA13Q86UQ4 5058 aa2.67□□□□□ -1.98
ATG4A-204ENST00000372246 RPS29P62273 56 aaKnown RBP2.67□□□□□ -1.98
ATG4A-204ENST00000372246 RYR2Q92736 4967 aa2.65□□□□□ -1.99
ATG4A-204ENST00000372246 KIAA1109Q2LD37 5005 aa2.64□□□□□ -1.99
ATG4A-204ENST00000372246 MUC2Q02817 5179 aa2.63□□□□□ -1.99
ATG4A-204ENST00000372246 KRTAP2-2Q9BYT5 123 aa2.62□□□□□ -1.99
ATG4A-204ENST00000372246 A0A1B0GVY2 172 aa2.61□□□□□ -1.99
ATG4A-204ENST00000372246 EPPK1P58107 5090 aaKnown RBP2.6□□□□□ -1.99
ATG4A-204ENST00000372246 HERC2O95714 4834 aa2.6□□□□□ -1.99
ATG4A-204ENST00000372246 M0QZ58 72 aa2.59□□□□□ -1.99
ATG4A-204ENST00000372246 Q5VSD8 79 aa2.57□□□□□ -2
ATG4A-204ENST00000372246 PRO2289Q9P1D8 64 aa2.57□□□□□ -2
ATG4A-204ENST00000372246 R4GN34 69 aa2.54□□□□□ -2
ATG4A-204ENST00000372246 PLAC4Q8WY50 150 aa2.53□□□□□ -2
ATG4A-204ENST00000372246 PCLOQ9Y6V0 5065 aa2.53□□□□□ -2
ATG4A-204ENST00000372246 MT1HL1P0DM35 61 aa2.51□□□□□ -2.01
ATG4A-204ENST00000372246 KRTAP10-7P60409 375 aaPredicted RBP2.49□□□□□ -2.01
ATG4A-204ENST00000372246 KRTAP4-1Q9BYQ7 146 aa2.49□□□□□ -2.01
ATG4A-204ENST00000372246 MUC17Q685J3 4493 aa2.47□□□□□ -2.01
ATG4A-204ENST00000372246 KRTAP5-11Q6L8G4 156 aa2.47□□□□□ -2.01
ATG4A-204ENST00000372246 FAT4Q6V0I7 4981 aa2.47□□□□□ -2.01
ATG4A-204ENST00000372246 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.43□□□□□ -2.02
ATG4A-204ENST00000372246 INE1O15225 51 aa2.42□□□□□ -2.02
ATG4A-204ENST00000372246 MT3P25713 68 aa2.4□□□□□ -2.02
ATG4A-204ENST00000372246 LCE1EQ5T753 118 aa2.4□□□□□ -2.03
ATG4A-204ENST00000372246 RNF213Q63HN8 5207 aa2.38□□□□□ -2.03
ATG4A-204ENST00000372246 HMCN2Q8NDA2 5059 aa2.36□□□□□ -2.03
ATG4A-204ENST00000372246 HERC1Q15751 4861 aa2.36□□□□□ -2.03
ATG4A-204ENST00000372246 KRTAP19-2Q3LHN2 52 aa2.35□□□□□ -2.03
ATG4A-204ENST00000372246 SPRR5A0A1B0GTR4 108 aa2.35□□□□□ -2.03
ATG4A-204ENST00000372246 FLGP20930 4061 aaPredicted RBP2.32□□□□□ -2.04
ATG4A-204ENST00000372246 TNP1P09430 55 aa2.3□□□□□ -2.04
ATG4A-204ENST00000372246 UBR4Q5T4S7 5183 aa2.3□□□□□ -2.04
ATG4A-204ENST00000372246 AHNAKQ09666 5890 aaKnown RBP2.29□□□□□ -2.04
ATG4A-204ENST00000372246 PP632Q6XCG6 107 aa2.29□□□□□ -2.04
ATG4A-204ENST00000372246 CRCT1Q9UGL9 99 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms