RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 DNAH17Q9UFH2 4485 aa5.85□□□□□ -1.47
PTPN1-201ENST00000371621 Q5VSD8 79 aa5.83□□□□□ -1.48
PTPN1-201ENST00000371621 DNAH8Q96JB1 4490 aa5.83□□□□□ -1.48
PTPN1-201ENST00000371621 HYDINQ4G0P3 5121 aa5.83□□□□□ -1.48
PTPN1-201ENST00000371621 HECTD4Q9Y4D8 3996 aa5.82□□□□□ -1.48
PTPN1-201ENST00000371621 XP32Q5T750 250 aa5.8□□□□□ -1.48
PTPN1-201ENST00000371621 J3QL48 77 aa5.8□□□□□ -1.48
PTPN1-201ENST00000371621 LRP1BQ9NZR2 4599 aa5.79□□□□□ -1.48
PTPN1-201ENST00000371621 TNP1P09430 55 aa5.78□□□□□ -1.48
PTPN1-201ENST00000371621 PP632Q6XCG6 107 aa5.78□□□□□ -1.48
PTPN1-201ENST00000371621 KRTAP3-2Q9BYR7 98 aa5.77□□□□□ -1.49
PTPN1-201ENST00000371621 PKHD1P08F94 4074 aa5.72□□□□□ -1.49
PTPN1-201ENST00000371621 KRTAP3-3Q9BYR6 98 aa5.72□□□□□ -1.49
PTPN1-201ENST00000371621 FAT1Q14517 4588 aa5.71□□□□□ -1.5
PTPN1-201ENST00000371621 DNAH5Q8TE73 4624 aa5.71□□□□□ -1.5
PTPN1-201ENST00000371621 FAT2Q9NYQ8 4349 aa5.66□□□□□ -1.5
PTPN1-201ENST00000371621 VPS13BQ7Z7G8 4022 aa5.66□□□□□ -1.5
PTPN1-201ENST00000371621 M0R2T5 61 aa5.66□□□□□ -1.5
PTPN1-201ENST00000371621 ALMS1Q8TCU4 4167 aa5.62□□□□□ -1.51
PTPN1-201ENST00000371621 KRTAP21-3Q3LHN1 58 aa5.61□□□□□ -1.51
PTPN1-201ENST00000371621 KMT2CQ8NEZ4 4911 aaKnown RBP5.57□□□□□ -1.52
PTPN1-201ENST00000371621 A0A1B0GVY2 172 aa5.56□□□□□ -1.52
PTPN1-201ENST00000371621 SACSQ9NZJ4 4579 aa5.54□□□□□ -1.52
PTPN1-201ENST00000371621 MYCBP2O75592 4640 aa5.54□□□□□ -1.52
PTPN1-201ENST00000371621 DYNC1H1Q14204 4646 aaKnown RBP5.53□□□□□ -1.52
PTPN1-201ENST00000371621 PKD1P98161 4303 aa5.51□□□□□ -1.53
PTPN1-201ENST00000371621 LRP1Q07954 4544 aaKnown RBP5.48□□□□□ -1.53
PTPN1-201ENST00000371621 PKHD1L1Q86WI1 4243 aa5.44□□□□□ -1.54
PTPN1-201ENST00000371621 APOBP04114 4563 aaKnown RBP5.43□□□□□ -1.54
PTPN1-201ENST00000371621 PRO2289Q9P1D8 64 aa5.43□□□□□ -1.54
PTPN1-201ENST00000371621 FAT3Q8TDW7 4589 aa5.41□□□□□ -1.54
PTPN1-201ENST00000371621 KIAA1109Q2LD37 5005 aa5.39□□□□□ -1.55
PTPN1-201ENST00000371621 LORP23490 312 aaPredicted RBP5.35□□□□□ -1.55
PTPN1-201ENST00000371621 KRTAP10-4P60372 401 aaPredicted RBP5.34□□□□□ -1.55
PTPN1-201ENST00000371621 RYR2Q92736 4967 aa5.32□□□□□ -1.56
PTPN1-201ENST00000371621 RYR3Q15413 4870 aa5.31□□□□□ -1.56
PTPN1-201ENST00000371621 RYR1P21817 5038 aa5.26□□□□□ -1.57
PTPN1-201ENST00000371621 INE1O15225 51 aa5.25□□□□□ -1.57
PTPN1-201ENST00000371621 HSPG2P98160 4391 aa5.22□□□□□ -1.57
PTPN1-201ENST00000371621 EPPK1P58107 5090 aaKnown RBP5.18□□□□□ -1.58
PTPN1-201ENST00000371621 KRTAP17-1Q9BYP8 105 aa5.18□□□□□ -1.58
PTPN1-201ENST00000371621 LRP2P98164 4655 aa5.16□□□□□ -1.58
PTPN1-201ENST00000371621 LPAP08519 4548 aa5.14□□□□□ -1.59
PTPN1-201ENST00000371621 TNXBP22105 4242 aa5.14□□□□□ -1.59
PTPN1-201ENST00000371621 KRTAP4-5Q9BYR2 181 aa5.12□□□□□ -1.59
PTPN1-201ENST00000371621 MT1HL1P0DM35 61 aa5.12□□□□□ -1.59
PTPN1-201ENST00000371621 KRTAP10-10P60014 251 aa5.1□□□□□ -1.59
PTPN1-201ENST00000371621 ABCA13Q86UQ4 5058 aa5.09□□□□□ -1.59
PTPN1-201ENST00000371621 MUC2Q02817 5179 aa5.02□□□□□ -1.61
PTPN1-201ENST00000371621 LCE3AQ5TA76 89 aa5.01□□□□□ -1.61
PTPN1-201ENST00000371621 HERC2O95714 4834 aa4.93□□□□□ -1.62
PTPN1-201ENST00000371621 KRTAP12-3P60328 96 aa4.87□□□□□ -1.63
PTPN1-201ENST00000371621 KRTAP23-1A1A580 65 aa4.84□□□□□ -1.64
PTPN1-201ENST00000371621 HERC1Q15751 4861 aa4.84□□□□□ -1.64
PTPN1-201ENST00000371621 KRTAP10-12P60413 245 aa4.78□□□□□ -1.64
PTPN1-201ENST00000371621 RNF213Q63HN8 5207 aa4.77□□□□□ -1.65
PTPN1-201ENST00000371621 FAT4Q6V0I7 4981 aa4.77□□□□□ -1.65
PTPN1-201ENST00000371621 KRTAP4-1Q9BYQ7 146 aa4.76□□□□□ -1.65
PTPN1-201ENST00000371621 SPRR5A0A1B0GTR4 108 aa4.72□□□□□ -1.65
PTPN1-201ENST00000371621 PCLOQ9Y6V0 5065 aa4.7□□□□□ -1.66
PTPN1-201ENST00000371621 CRCT1Q9UGL9 99 aa4.63□□□□□ -1.67
PTPN1-201ENST00000371621 UBR4Q5T4S7 5183 aa4.63□□□□□ -1.67
PTPN1-201ENST00000371621 BIRC6Q9NR09 4857 aa4.62□□□□□ -1.67
PTPN1-201ENST00000371621 MUC17Q685J3 4493 aa4.57□□□□□ -1.68
PTPN1-201ENST00000371621 KRTAP8-1Q8IUC2 63 aa4.52□□□□□ -1.69
PTPN1-201ENST00000371621 KRTAP10-5P60370 271 aa4.51□□□□□ -1.69
PTPN1-201ENST00000371621 OBSCNQ5VST9 7968 aa4.51□□□□□ -1.69
PTPN1-201ENST00000371621 SYNE1Q8NF91 8797 aaKnown RBP4.5□□□□□ -1.69
PTPN1-201ENST00000371621 FLGP20930 4061 aaPredicted RBP4.49□□□□□ -1.69
PTPN1-201ENST00000371621 HMCN2Q8NDA2 5059 aa4.49□□□□□ -1.69
PTPN1-201ENST00000371621 SPRR2GQ9BYE4 73 aa4.43□□□□□ -1.7
PTPN1-201ENST00000371621 KRTAP19-2Q3LHN2 52 aa4.41□□□□□ -1.7
PTPN1-201ENST00000371621 LCE3CQ5T5A8 94 aa4.37□□□□□ -1.71
PTPN1-201ENST00000371621 KRTAP19-1Q8IUB9 90 aa4.37□□□□□ -1.71
PTPN1-201ENST00000371621 KRTAP19-5Q3LI72 72 aa4.36□□□□□ -1.71
PTPN1-201ENST00000371621 MT1FP04733 61 aa4.33□□□□□ -1.72
PTPN1-201ENST00000371621 KRTAP10-7P60409 375 aaPredicted RBP4.33□□□□□ -1.72
PTPN1-201ENST00000371621 MT2AP02795 61 aa4.32□□□□□ -1.72
PTPN1-201ENST00000371621 MT1HP80294 61 aa4.31□□□□□ -1.72
PTPN1-201ENST00000371621 LCE2CQ5TA81 110 aa4.3□□□□□ -1.72
PTPN1-201ENST00000371621 USH2AO75445 5202 aa4.27□□□□□ -1.73
PTPN1-201ENST00000371621 FSIP2Q5CZC0 6907 aa4.26□□□□□ -1.73
PTPN1-201ENST00000371621 KRTAP12-4P60329 112 aa4.24□□□□□ -1.73
PTPN1-201ENST00000371621 MT1XP80297 61 aa4.19□□□□□ -1.74
PTPN1-201ENST00000371621 KRTAP4-7Q9BYR0 210 aa4.17□□□□□ -1.74
PTPN1-201ENST00000371621 KRTAP9-8Q9BYQ0 159 aa4.13□□□□□ -1.75
PTPN1-201ENST00000371621 KRTAP4-8A0A0G2JLE6 195 aa4.12□□□□□ -1.75
PTPN1-201ENST00000371621 KRTAP4-8Q9BYQ9 185 aa4.12□□□□□ -1.75
PTPN1-201ENST00000371621 KMT2DO14686 5537 aa4.12□□□□□ -1.75
PTPN1-201ENST00000371621 MT1BP07438 61 aa4.09□□□□□ -1.75
PTPN1-201ENST00000371621 KRTAP19-8Q3LI54 63 aa4.07□□□□□ -1.76
PTPN1-201ENST00000371621 FCGBPQ9Y6R7 5405 aaPredicted RBP4.01□□□□□ -1.77
PTPN1-201ENST00000371621 DSTQ03001 7570 aaKnown RBP4□□□□□ -1.77
PTPN1-201ENST00000371621 LCE3BQ5TA77 95 aa3.98□□□□□ -1.77
PTPN1-201ENST00000371621 MT1GP13640 62 aa3.95□□□□□ -1.78
PTPN1-201ENST00000371621 KRTAP9-3Q9BYQ3 159 aa3.95□□□□□ -1.78
PTPN1-201ENST00000371621 KRTAP9-6A8MVA2 160 aa3.92□□□□□ -1.78
PTPN1-201ENST00000371621 LCE2DQ5TA82 110 aaPredicted RBP3.91□□□□□ -1.78
PTPN1-201ENST00000371621 LCE2BO14633 110 aa3.87□□□□□ -1.79
PTPN1-201ENST00000371621 LOC100996750A0A140TA64 210 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms