RNA–Protein interactions for RNA: ENST00000371121.4

SMARCA1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMARCA1, Length 3,564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-201ENST00000371121 KRTAP3-3Q9BYR6 98 aa6.12□□□□□ -1.43
SMARCA1-201ENST00000371121 C9orf92A6NGG3 77 aa6.09□□□□□ -1.43
SMARCA1-201ENST00000371121 KRTAP3-2Q9BYR7 98 aa6.09□□□□□ -1.43
SMARCA1-201ENST00000371121 MYCBP2O75592 4640 aa6.09□□□□□ -1.43
SMARCA1-201ENST00000371121 KRTAP15-1Q3LI76 137 aa6.08□□□□□ -1.44
SMARCA1-201ENST00000371121 C10orf95Q9H7T3 257 aa6.08□□□□□ -1.44
SMARCA1-201ENST00000371121 RPS29P62273 56 aaKnown RBP6.01□□□□□ -1.45
SMARCA1-201ENST00000371121 RPL37P61927 97 aaKnown RBP5.97□□□□□ -1.45
SMARCA1-201ENST00000371121 KRTAP12-2P59991 146 aa5.96□□□□□ -1.46
SMARCA1-201ENST00000371121 NDUFAF8A1L188 74 aa5.95□□□□□ -1.46
SMARCA1-201ENST00000371121 A0A0D9SG42 100 aa5.95□□□□□ -1.46
SMARCA1-201ENST00000371121 KRTAP10-4P60372 401 aaPredicted RBP5.94□□□□□ -1.46
SMARCA1-201ENST00000371121 KRTAP10-8P60410 259 aa5.94□□□□□ -1.46
SMARCA1-201ENST00000371121 KMT2CQ8NEZ4 4911 aaKnown RBP5.91□□□□□ -1.46
SMARCA1-201ENST00000371121 DMBT1Q9UGM3 2413 aaPredicted RBP5.91□□□□□ -1.46
SMARCA1-201ENST00000371121 SPINT4Q6UDR6 99 aa5.91□□□□□ -1.46
SMARCA1-201ENST00000371121 K7ERS5 55 aa5.9□□□□□ -1.46
SMARCA1-201ENST00000371121 S4R3F8 94 aa5.87□□□□□ -1.47
SMARCA1-201ENST00000371121 KRTAP12-1P59990 96 aa5.85□□□□□ -1.47
SMARCA1-201ENST00000371121 XP32Q5T750 250 aa5.83□□□□□ -1.48
SMARCA1-201ENST00000371121 SMR3BP02814 79 aaPredicted RBP5.82□□□□□ -1.48
SMARCA1-201ENST00000371121 LRP2P98164 4655 aa5.79□□□□□ -1.48
SMARCA1-201ENST00000371121 RYR2Q92736 4967 aa5.76□□□□□ -1.49
SMARCA1-201ENST00000371121 RYR1P21817 5038 aa5.7□□□□□ -1.5
SMARCA1-201ENST00000371121 ABCA13Q86UQ4 5058 aa5.65□□□□□ -1.5
SMARCA1-201ENST00000371121 A0A1B0GVY2 172 aa5.64□□□□□ -1.51
SMARCA1-201ENST00000371121 KRTAP17-1Q9BYP8 105 aa5.59□□□□□ -1.51
SMARCA1-201ENST00000371121 MUC17Q685J3 4493 aa5.59□□□□□ -1.51
SMARCA1-201ENST00000371121 RYR3Q15413 4870 aa5.55□□□□□ -1.52
SMARCA1-201ENST00000371121 LORP23490 312 aaPredicted RBP5.51□□□□□ -1.53
SMARCA1-201ENST00000371121 M0QZ58 72 aa5.5□□□□□ -1.53
SMARCA1-201ENST00000371121 A0A0A0MQY5 61 aa5.49□□□□□ -1.53
SMARCA1-201ENST00000371121 PLAC4Q8WY50 150 aa5.48□□□□□ -1.53
SMARCA1-201ENST00000371121 KIAA1109Q2LD37 5005 aa5.43□□□□□ -1.54
SMARCA1-201ENST00000371121 MUC2Q02817 5179 aa5.38□□□□□ -1.55
SMARCA1-201ENST00000371121 MT1HL1P0DM35 61 aa5.38□□□□□ -1.55
SMARCA1-201ENST00000371121 LUZP6Q538Z0 58 aa5.35□□□□□ -1.55
SMARCA1-201ENST00000371121 FLGP20930 4061 aaPredicted RBP5.32□□□□□ -1.56
SMARCA1-201ENST00000371121 EPPK1P58107 5090 aaKnown RBP5.3□□□□□ -1.56
SMARCA1-201ENST00000371121 R4GN34 69 aa5.29□□□□□ -1.56
SMARCA1-201ENST00000371121 PCLOQ9Y6V0 5065 aa5.29□□□□□ -1.56
SMARCA1-201ENST00000371121 Q5VSD8 79 aa5.29□□□□□ -1.56
SMARCA1-201ENST00000371121 KRTAP19-2Q3LHN2 52 aa5.25□□□□□ -1.57
SMARCA1-201ENST00000371121 KRTAP4-1Q9BYQ7 146 aa5.23□□□□□ -1.57
SMARCA1-201ENST00000371121 SPRR5A0A1B0GTR4 108 aa5.21□□□□□ -1.57
SMARCA1-201ENST00000371121 BIRC6Q9NR09 4857 aa5.19□□□□□ -1.58
SMARCA1-201ENST00000371121 PP632Q6XCG6 107 aa5.13□□□□□ -1.59
SMARCA1-201ENST00000371121 HERC1Q15751 4861 aa5.07□□□□□ -1.6
SMARCA1-201ENST00000371121 FAT4Q6V0I7 4981 aa5.03□□□□□ -1.6
SMARCA1-201ENST00000371121 CAMK2N1Q7Z7J9 78 aa5□□□□□ -1.61
SMARCA1-201ENST00000371121 KRTAP4-5Q9BYR2 181 aa4.99□□□□□ -1.61
SMARCA1-201ENST00000371121 KRTAP23-1A1A580 65 aa4.95□□□□□ -1.62
SMARCA1-201ENST00000371121 HERC2O95714 4834 aa4.92□□□□□ -1.62
SMARCA1-201ENST00000371121 UBR4Q5T4S7 5183 aa4.91□□□□□ -1.62
SMARCA1-201ENST00000371121 TNP1P09430 55 aa4.89□□□□□ -1.63
SMARCA1-201ENST00000371121 HMCN2Q8NDA2 5059 aa4.84□□□□□ -1.63
SMARCA1-201ENST00000371121 SEC61BP60468 96 aaKnown RBP4.83□□□□□ -1.64
SMARCA1-201ENST00000371121 LCE3AQ5TA76 89 aa4.8□□□□□ -1.64
SMARCA1-201ENST00000371121 KRTAP19-1Q8IUB9 90 aa4.79□□□□□ -1.64
SMARCA1-201ENST00000371121 PRO2289Q9P1D8 64 aa4.78□□□□□ -1.64
SMARCA1-201ENST00000371121 RNF213Q63HN8 5207 aa4.75□□□□□ -1.65
SMARCA1-201ENST00000371121 SPRR2GQ9BYE4 73 aa4.73□□□□□ -1.65
SMARCA1-201ENST00000371121 LCE2CQ5TA81 110 aa4.72□□□□□ -1.65
SMARCA1-201ENST00000371121 KRTAP8-1Q8IUC2 63 aa4.64□□□□□ -1.67
SMARCA1-201ENST00000371121 KRTAP10-12P60413 245 aa4.64□□□□□ -1.67
SMARCA1-201ENST00000371121 INE1O15225 51 aa4.61□□□□□ -1.67
SMARCA1-201ENST00000371121 KRTAP10-5P60370 271 aa4.56□□□□□ -1.68
SMARCA1-201ENST00000371121 MT1FP04733 61 aa4.54□□□□□ -1.68
SMARCA1-201ENST00000371121 MT1XP80297 61 aa4.53□□□□□ -1.68
SMARCA1-201ENST00000371121 KMT2DO14686 5537 aa4.52□□□□□ -1.69
SMARCA1-201ENST00000371121 MT2AP02795 61 aa4.48□□□□□ -1.69
SMARCA1-201ENST00000371121 MT1BP07438 61 aa4.48□□□□□ -1.69
SMARCA1-201ENST00000371121 KRTAP9-8Q9BYQ0 159 aa4.48□□□□□ -1.69
SMARCA1-201ENST00000371121 KRTAP12-3P60328 96 aa4.47□□□□□ -1.69
SMARCA1-201ENST00000371121 KRTAP10-7P60409 375 aaPredicted RBP4.46□□□□□ -1.7
SMARCA1-201ENST00000371121 MT1HP80294 61 aa4.46□□□□□ -1.7
SMARCA1-201ENST00000371121 KRTAP19-8Q3LI54 63 aa4.45□□□□□ -1.7
SMARCA1-201ENST00000371121 J3QL48 77 aa4.42□□□□□ -1.7
SMARCA1-201ENST00000371121 KRTAP9-6A8MVA2 160 aa4.38□□□□□ -1.71
SMARCA1-201ENST00000371121 USH2AO75445 5202 aa4.38□□□□□ -1.71
SMARCA1-201ENST00000371121 KRTAP10-10P60014 251 aa4.37□□□□□ -1.71
SMARCA1-201ENST00000371121 LCE3CQ5T5A8 94 aa4.28□□□□□ -1.72
SMARCA1-201ENST00000371121 LCE2DQ5TA82 110 aaPredicted RBP4.27□□□□□ -1.73
SMARCA1-201ENST00000371121 KRTAP19-5Q3LI72 72 aa4.26□□□□□ -1.73
SMARCA1-201ENST00000371121 M0R2T5 61 aa4.24□□□□□ -1.73
SMARCA1-201ENST00000371121 KRTAP9-3Q9BYQ3 159 aa4.24□□□□□ -1.73
SMARCA1-201ENST00000371121 KRTAP2-3P0C7H8 128 aa4.22□□□□□ -1.73
SMARCA1-201ENST00000371121 KRTAP2-4Q9BYR9 128 aa4.22□□□□□ -1.73
SMARCA1-201ENST00000371121 KRTAP2-1Q9BYU5 128 aa4.22□□□□□ -1.73
SMARCA1-201ENST00000371121 KRTAP4-7Q9BYR0 210 aa4.17□□□□□ -1.74
SMARCA1-201ENST00000371121 KRTAP9-6A0A140TA67 174 aa4.16□□□□□ -1.74
SMARCA1-201ENST00000371121 KRTAP4-8A0A0G2JLE6 195 aa4.14□□□□□ -1.75
SMARCA1-201ENST00000371121 KRTAP4-8Q9BYQ9 185 aa4.14□□□□□ -1.75
SMARCA1-201ENST00000371121 KRTAP9-2Q9BYQ4 174 aa4.12□□□□□ -1.75
SMARCA1-201ENST00000371121 LCE2BO14633 110 aa4.07□□□□□ -1.76
SMARCA1-201ENST00000371121 KRTAP19-7Q3SYF9 63 aa4.07□□□□□ -1.76
SMARCA1-201ENST00000371121 MT1LQ93083 61 aa3.9□□□□□ -1.78
SMARCA1-201ENST00000371121 SSPOA2VEC9 5147 aa3.87□□□□□ -1.79
SMARCA1-201ENST00000371121 LOC100996750A0A140TA64 210 aa3.87□□□□□ -1.79
SMARCA1-201ENST00000371121 MT1EP04732 61 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms