RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 SPRR2GQ9BYE4 73 aa1.63□□□□□ -2.15
SYNE1-207ENST00000367255 CSMD3Q7Z407 3707 aa1.63□□□□□ -2.15
SYNE1-207ENST00000367255 CSMD2Q7Z408 3487 aa1.62□□□□□ -2.15
SYNE1-207ENST00000367255 KRTAP3-3Q9BYR6 98 aa1.62□□□□□ -2.15
SYNE1-207ENST00000367255 KRTAP12-3P60328 96 aa1.62□□□□□ -2.15
SYNE1-207ENST00000367255 HECTD4Q9Y4D8 3996 aa1.61□□□□□ -2.15
SYNE1-207ENST00000367255 DNAH7Q8WXX0 4024 aa1.6□□□□□ -2.15
SYNE1-207ENST00000367255 ZNF469Q96JG9 3925 aaPredicted RBP1.59□□□□□ -2.16
SYNE1-207ENST00000367255 KRTAP10-5P60370 271 aa1.55□□□□□ -2.16
SYNE1-207ENST00000367255 KRTAP10-4P60372 401 aaPredicted RBP1.54□□□□□ -2.16
SYNE1-207ENST00000367255 KMT2AQ03164 3969 aa1.53□□□□□ -2.16
SYNE1-207ENST00000367255 DNAH3Q8TD57 4116 aa1.53□□□□□ -2.17
SYNE1-207ENST00000367255 ANK3Q12955 4377 aaKnown RBP1.52□□□□□ -2.17
SYNE1-207ENST00000367255 KRTAP17-1Q9BYP8 105 aa1.51□□□□□ -2.17
SYNE1-207ENST00000367255 LCE3AQ5TA76 89 aa1.51□□□□□ -2.17
SYNE1-207ENST00000367255 KRTAP4-1Q9BYQ7 146 aa1.51□□□□□ -2.17
SYNE1-207ENST00000367255 MT1HL1P0DM35 61 aa1.49□□□□□ -2.17
SYNE1-207ENST00000367255 FRAS1Q86XX4 4008 aa1.48□□□□□ -2.17
SYNE1-207ENST00000367255 VPS13BQ7Z7G8 4022 aa1.48□□□□□ -2.17
SYNE1-207ENST00000367255 LCE3CQ5T5A8 94 aa1.47□□□□□ -2.17
SYNE1-207ENST00000367255 ALMS1Q8TCU4 4167 aa1.45□□□□□ -2.18
SYNE1-207ENST00000367255 KRTAP19-8Q3LI54 63 aa1.45□□□□□ -2.18
SYNE1-207ENST00000367255 DNAH6Q9C0G6 4158 aa1.42□□□□□ -2.18
SYNE1-207ENST00000367255 KRTAP4-7Q9BYR0 210 aa1.42□□□□□ -2.18
SYNE1-207ENST00000367255 SPRR2AP35326 72 aa1.4□□□□□ -2.19
SYNE1-207ENST00000367255 KRTAP19-5Q3LI72 72 aa1.39□□□□□ -2.19
SYNE1-207ENST00000367255 MT1LQ93083 61 aa1.38□□□□□ -2.19
SYNE1-207ENST00000367255 DNAH1Q9P2D7 4330 aa1.38□□□□□ -2.19
SYNE1-207ENST00000367255 MT1AP04731 61 aa1.38□□□□□ -2.19
SYNE1-207ENST00000367255 PRKDCP78527 4128 aaKnown RBP1.38□□□□□ -2.19
SYNE1-207ENST00000367255 MT1EP04732 61 aa1.38□□□□□ -2.19
SYNE1-207ENST00000367255 VPS13DQ5THJ4 4388 aa1.38□□□□□ -2.19
SYNE1-207ENST00000367255 KRTAP4-8A0A0G2JLE6 195 aa1.38□□□□□ -2.19
SYNE1-207ENST00000367255 KRTAP4-8Q9BYQ9 185 aa1.38□□□□□ -2.19
SYNE1-207ENST00000367255 DNHD1Q96M86 4753 aa1.37□□□□□ -2.19
SYNE1-207ENST00000367255 FLGP20930 4061 aaPredicted RBP1.37□□□□□ -2.19
SYNE1-207ENST00000367255 MT1GP13640 62 aa1.36□□□□□ -2.19
SYNE1-207ENST00000367255 SPRR2BP35325 72 aa1.35□□□□□ -2.19
SYNE1-207ENST00000367255 HUWE1Q7Z6Z7 4374 aaKnown RBP1.35□□□□□ -2.19
SYNE1-207ENST00000367255 KRTAP4-9Q9BYQ8 210 aa1.35□□□□□ -2.19
SYNE1-207ENST00000367255 DNAH2Q9P225 4427 aa1.35□□□□□ -2.19
SYNE1-207ENST00000367255 DNAH10Q8IVF4 4471 aa1.35□□□□□ -2.19
SYNE1-207ENST00000367255 KRTAP2-3P0C7H8 128 aa1.34□□□□□ -2.19
SYNE1-207ENST00000367255 KRTAP2-4Q9BYR9 128 aa1.34□□□□□ -2.19
SYNE1-207ENST00000367255 KRTAP2-1Q9BYU5 128 aa1.34□□□□□ -2.19
SYNE1-207ENST00000367255 KRTAP10-7P60409 375 aaPredicted RBP1.34□□□□□ -2.19
SYNE1-207ENST00000367255 LOC100996750A0A140TA64 210 aa1.34□□□□□ -2.19
SYNE1-207ENST00000367255 DNAH9Q9NYC9 4486 aa1.34□□□□□ -2.2
SYNE1-207ENST00000367255 PKHD1P08F94 4074 aa1.34□□□□□ -2.2
SYNE1-207ENST00000367255 MT1FP04733 61 aa1.34□□□□□ -2.2
SYNE1-207ENST00000367255 KRTAP4-3Q9BYR4 195 aa1.33□□□□□ -2.2
SYNE1-207ENST00000367255 PLECQ15149 4684 aaKnown RBP1.33□□□□□ -2.2
SYNE1-207ENST00000367255 DNAH11Q96DT5 4516 aa1.33□□□□□ -2.2
SYNE1-207ENST00000367255 LCE3EQ5T5B0 92 aa1.33□□□□□ -2.2
SYNE1-207ENST00000367255 FAT2Q9NYQ8 4349 aa1.31□□□□□ -2.2
SYNE1-207ENST00000367255 LRP1Q07954 4544 aaKnown RBP1.31□□□□□ -2.2
SYNE1-207ENST00000367255 KRTAP12-4P60329 112 aa1.31□□□□□ -2.2
SYNE1-207ENST00000367255 DNAH17Q9UFH2 4485 aa1.29□□□□□ -2.2
SYNE1-207ENST00000367255 MT1HP80294 61 aa1.29□□□□□ -2.2
SYNE1-207ENST00000367255 SACSQ9NZJ4 4579 aa1.29□□□□□ -2.2
SYNE1-207ENST00000367255 DYNC2H1Q8NCM8 4307 aaKnown RBP1.29□□□□□ -2.2
SYNE1-207ENST00000367255 PKHD1L1Q86WI1 4243 aa1.29□□□□□ -2.2
SYNE1-207ENST00000367255 FAT1Q14517 4588 aa1.29□□□□□ -2.2
SYNE1-207ENST00000367255 LCE3DQ9BYE3 92 aa1.28□□□□□ -2.2
SYNE1-207ENST00000367255 LCE2CQ5TA81 110 aa1.28□□□□□ -2.2
SYNE1-207ENST00000367255 LCE3BQ5TA77 95 aa1.28□□□□□ -2.21
SYNE1-207ENST00000367255 DYNC1H1Q14204 4646 aaKnown RBP1.27□□□□□ -2.21
SYNE1-207ENST00000367255 DNAH5Q8TE73 4624 aa1.27□□□□□ -2.21
SYNE1-207ENST00000367255 MT2AP02795 61 aa1.26□□□□□ -2.21
SYNE1-207ENST00000367255 SPRR2FQ96RM1 72 aa1.26□□□□□ -2.21
SYNE1-207ENST00000367255 KRTAP19-1Q8IUB9 90 aa1.25□□□□□ -2.21
SYNE1-207ENST00000367255 HSPG2P98160 4391 aa1.24□□□□□ -2.21
SYNE1-207ENST00000367255 MT1MQ8N339 61 aa1.24□□□□□ -2.21
SYNE1-207ENST00000367255 LRP1BQ9NZR2 4599 aa1.24□□□□□ -2.21
SYNE1-207ENST00000367255 MYCBP2O75592 4640 aa1.24□□□□□ -2.21
SYNE1-207ENST00000367255 MT1XP80297 61 aa1.24□□□□□ -2.21
SYNE1-207ENST00000367255 DNAH8Q96JB1 4490 aa1.23□□□□□ -2.21
SYNE1-207ENST00000367255 LCE1AQ5T7P2 110 aa1.22□□□□□ -2.21
SYNE1-207ENST00000367255 MT1BP07438 61 aa1.22□□□□□ -2.21
SYNE1-207ENST00000367255 APOBP04114 4563 aaKnown RBP1.22□□□□□ -2.21
SYNE1-207ENST00000367255 KRTAP19-3Q7Z4W3 81 aa1.21□□□□□ -2.22
SYNE1-207ENST00000367255 LCE2DQ5TA82 110 aaPredicted RBP1.21□□□□□ -2.22
SYNE1-207ENST00000367255 STARD9Q9P2P6 4700 aa1.2□□□□□ -2.22
SYNE1-207ENST00000367255 GPR98Q8WXG9 6306 aa1.2□□□□□ -2.22
SYNE1-207ENST00000367255 SPRR2DP22532 72 aa1.2□□□□□ -2.22
SYNE1-207ENST00000367255 LCE2BO14633 110 aa1.19□□□□□ -2.22
SYNE1-207ENST00000367255 SYNE2Q8WXH0 6885 aaKnown RBP1.18□□□□□ -2.22
SYNE1-207ENST00000367255 KRTAP19-2Q3LHN2 52 aa1.17□□□□□ -2.22
SYNE1-207ENST00000367255 SPRR2EP22531 72 aa1.17□□□□□ -2.22
SYNE1-207ENST00000367255 PKD1P98161 4303 aa1.17□□□□□ -2.22
SYNE1-207ENST00000367255 KRTAP9-3Q9BYQ3 159 aa1.17□□□□□ -2.22
SYNE1-207ENST00000367255 LCE2AQ5TA79 106 aaPredicted RBP1.16□□□□□ -2.22
SYNE1-207ENST00000367255 KRTAP19-6Q3LI70 58 aa1.15□□□□□ -2.22
SYNE1-207ENST00000367255 RYR3Q15413 4870 aa1.15□□□□□ -2.22
SYNE1-207ENST00000367255 PRM1P04553 51 aa1.15□□□□□ -2.22
SYNE1-207ENST00000367255 KIAA1109Q2LD37 5005 aa1.15□□□□□ -2.22
SYNE1-207ENST00000367255 FAT3Q8TDW7 4589 aa1.15□□□□□ -2.22
SYNE1-207ENST00000367255 LCE1BQ5T7P3 118 aa1.15□□□□□ -2.23
SYNE1-207ENST00000367255 RYR1P21817 5038 aa1.14□□□□□ -2.23
SYNE1-207ENST00000367255 KRTAP9-8Q9BYQ0 159 aa1.13□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms