RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 LORP23490 312 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-206ENST00000367253 PLECQ15149 4684 aaKnown RBP4.02□□□□□ -1.77
SYNE1-206ENST00000367253 KRTAP10-4P60372 401 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-206ENST00000367253 DYNC2H1Q8NCM8 4307 aaKnown RBP4.01□□□□□ -1.77
SYNE1-206ENST00000367253 PRKDCP78527 4128 aaKnown RBP3.99□□□□□ -1.77
SYNE1-206ENST00000367253 VPS13DQ5THJ4 4388 aa3.99□□□□□ -1.77
SYNE1-206ENST00000367253 ALMS1Q8TCU4 4167 aa3.99□□□□□ -1.77
SYNE1-206ENST00000367253 KRTAP8-1Q8IUC2 63 aa3.98□□□□□ -1.77
SYNE1-206ENST00000367253 DNAH10Q8IVF4 4471 aa3.97□□□□□ -1.77
SYNE1-206ENST00000367253 DNAH7Q8WXX0 4024 aa3.96□□□□□ -1.78
SYNE1-206ENST00000367253 MT1HL1P0DM35 61 aa3.95□□□□□ -1.78
SYNE1-206ENST00000367253 STARD9Q9P2P6 4700 aa3.95□□□□□ -1.78
SYNE1-206ENST00000367253 CRCT1Q9UGL9 99 aa3.92□□□□□ -1.78
SYNE1-206ENST00000367253 KRTAP10-12P60413 245 aa3.91□□□□□ -1.78
SYNE1-206ENST00000367253 DNAH5Q8TE73 4624 aa3.89□□□□□ -1.79
SYNE1-206ENST00000367253 KRTAP3-1Q9BYR8 98 aa3.89□□□□□ -1.79
SYNE1-206ENST00000367253 DNAH11Q96DT5 4516 aa3.89□□□□□ -1.79
SYNE1-206ENST00000367253 DNAH17Q9UFH2 4485 aa3.89□□□□□ -1.79
SYNE1-206ENST00000367253 FRAS1Q86XX4 4008 aa3.89□□□□□ -1.79
SYNE1-206ENST00000367253 KRTAP10-6P60371 365 aaPredicted RBP3.89□□□□□ -1.79
SYNE1-206ENST00000367253 HECTD4Q9Y4D8 3996 aa3.87□□□□□ -1.79
SYNE1-206ENST00000367253 DNAH6Q9C0G6 4158 aa3.84□□□□□ -1.79
SYNE1-206ENST00000367253 KRTAP4-5Q9BYR2 181 aa3.84□□□□□ -1.79
SYNE1-206ENST00000367253 KRTAP10-7P60409 375 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-206ENST00000367253 DYNC1H1Q14204 4646 aaKnown RBP3.83□□□□□ -1.8
SYNE1-206ENST00000367253 DNAH8Q96JB1 4490 aa3.81□□□□□ -1.8
SYNE1-206ENST00000367253 DNAH2Q9P225 4427 aa3.8□□□□□ -1.8
SYNE1-206ENST00000367253 LRP1BQ9NZR2 4599 aa3.79□□□□□ -1.8
SYNE1-206ENST00000367253 LCE2DQ5TA82 110 aaPredicted RBP3.79□□□□□ -1.8
SYNE1-206ENST00000367253 KRTAP19-4Q3LI73 84 aa3.77□□□□□ -1.81
SYNE1-206ENST00000367253 KIAA1109Q2LD37 5005 aa3.75□□□□□ -1.81
SYNE1-206ENST00000367253 KMT2AQ03164 3969 aa3.75□□□□□ -1.81
SYNE1-206ENST00000367253 FAT1Q14517 4588 aa3.74□□□□□ -1.81
SYNE1-206ENST00000367253 RYR2Q92736 4967 aa3.72□□□□□ -1.81
SYNE1-206ENST00000367253 SPRR2FQ96RM1 72 aa3.71□□□□□ -1.82
SYNE1-206ENST00000367253 SACSQ9NZJ4 4579 aa3.71□□□□□ -1.82
SYNE1-206ENST00000367253 FAT2Q9NYQ8 4349 aa3.71□□□□□ -1.82
SYNE1-206ENST00000367253 RYR3Q15413 4870 aa3.69□□□□□ -1.82
SYNE1-206ENST00000367253 KRTAP12-3P60328 96 aa3.69□□□□□ -1.82
SYNE1-206ENST00000367253 RYR1P21817 5038 aa3.68□□□□□ -1.82
SYNE1-206ENST00000367253 PKD1P98161 4303 aa3.67□□□□□ -1.82
SYNE1-206ENST00000367253 SPRR2EP22531 72 aa3.63□□□□□ -1.83
SYNE1-206ENST00000367253 SPRR2BP35325 72 aa3.63□□□□□ -1.83
SYNE1-206ENST00000367253 SPRR2AP35326 72 aa3.63□□□□□ -1.83
SYNE1-206ENST00000367253 APOBP04114 4563 aaKnown RBP3.62□□□□□ -1.83
SYNE1-206ENST00000367253 KRTAP10-5P60370 271 aa3.62□□□□□ -1.83
SYNE1-206ENST00000367253 HYDINQ4G0P3 5121 aa3.61□□□□□ -1.83
SYNE1-206ENST00000367253 KMT2CQ8NEZ4 4911 aaKnown RBP3.6□□□□□ -1.83
SYNE1-206ENST00000367253 KRTAP17-1Q9BYP8 105 aa3.59□□□□□ -1.83
SYNE1-206ENST00000367253 VPS13BQ7Z7G8 4022 aa3.58□□□□□ -1.84
SYNE1-206ENST00000367253 LCE3AQ5TA76 89 aa3.57□□□□□ -1.84
SYNE1-206ENST00000367253 BIRC6Q9NR09 4857 aa3.57□□□□□ -1.84
SYNE1-206ENST00000367253 LCE2CQ5TA81 110 aa3.57□□□□□ -1.84
SYNE1-206ENST00000367253 SPRR2DP22532 72 aa3.56□□□□□ -1.84
SYNE1-206ENST00000367253 PKHD1L1Q86WI1 4243 aa3.55□□□□□ -1.84
SYNE1-206ENST00000367253 HERC2O95714 4834 aa3.53□□□□□ -1.84
SYNE1-206ENST00000367253 PKHD1P08F94 4074 aa3.53□□□□□ -1.84
SYNE1-206ENST00000367253 LCE2BO14633 110 aa3.52□□□□□ -1.85
SYNE1-206ENST00000367253 MT1HP80294 61 aa3.52□□□□□ -1.85
SYNE1-206ENST00000367253 SYNE1Q8NF91 8797 aaKnown RBP3.52□□□□□ -1.85
SYNE1-206ENST00000367253 KRTAP12-4P60329 112 aa3.51□□□□□ -1.85
SYNE1-206ENST00000367253 LRP1Q07954 4544 aaKnown RBP3.51□□□□□ -1.85
SYNE1-206ENST00000367253 OBSCNQ5VST9 7968 aa3.47□□□□□ -1.85
SYNE1-206ENST00000367253 HSPG2P98160 4391 aa3.47□□□□□ -1.85
SYNE1-206ENST00000367253 KRTAP4-1Q9BYQ7 146 aa3.45□□□□□ -1.86
SYNE1-206ENST00000367253 MYCBP2O75592 4640 aa3.45□□□□□ -1.86
SYNE1-206ENST00000367253 TNXBP22105 4242 aa3.43□□□□□ -1.86
SYNE1-206ENST00000367253 KRTAP9-6A0A140TA67 174 aa3.42□□□□□ -1.86
SYNE1-206ENST00000367253 MT2AP02795 61 aa3.42□□□□□ -1.86
SYNE1-206ENST00000367253 EPPK1P58107 5090 aaKnown RBP3.4□□□□□ -1.87
SYNE1-206ENST00000367253 MT3P25713 68 aa3.39□□□□□ -1.87
SYNE1-206ENST00000367253 FAT3Q8TDW7 4589 aa3.38□□□□□ -1.87
SYNE1-206ENST00000367253 SPRR5A0A1B0GTR4 108 aa3.37□□□□□ -1.87
SYNE1-206ENST00000367253 ABCA13Q86UQ4 5058 aa3.33□□□□□ -1.88
SYNE1-206ENST00000367253 LRP2P98164 4655 aa3.32□□□□□ -1.88
SYNE1-206ENST00000367253 KRTAP9-2Q9BYQ4 174 aa3.32□□□□□ -1.88
SYNE1-206ENST00000367253 HERC1Q15751 4861 aa3.31□□□□□ -1.88
SYNE1-206ENST00000367253 SPRR2GQ9BYE4 73 aa3.3□□□□□ -1.88
SYNE1-206ENST00000367253 KRTAP20-1Q3LI63 56 aa3.28□□□□□ -1.88
SYNE1-206ENST00000367253 LCE2AQ5TA79 106 aaPredicted RBP3.27□□□□□ -1.89
SYNE1-206ENST00000367253 MT1FP04733 61 aa3.24□□□□□ -1.89
SYNE1-206ENST00000367253 PCLOQ9Y6V0 5065 aa3.23□□□□□ -1.89
SYNE1-206ENST00000367253 KRTAP19-1Q8IUB9 90 aa3.2□□□□□ -1.9
SYNE1-206ENST00000367253 KRTAP19-2Q3LHN2 52 aa3.18□□□□□ -1.9
SYNE1-206ENST00000367253 MT1GP13640 62 aa3.17□□□□□ -1.9
SYNE1-206ENST00000367253 KRTAP9-7A8MTY7 169 aa3.17□□□□□ -1.9
SYNE1-206ENST00000367253 LCE3CQ5T5A8 94 aa3.16□□□□□ -1.9
SYNE1-206ENST00000367253 LPAP08519 4548 aa3.15□□□□□ -1.9
SYNE1-206ENST00000367253 KRTAP19-5Q3LI72 72 aa3.12□□□□□ -1.91
SYNE1-206ENST00000367253 HMCN2Q8NDA2 5059 aa3.11□□□□□ -1.91
SYNE1-206ENST00000367253 KRTAP19-8Q3LI54 63 aa3.11□□□□□ -1.91
SYNE1-206ENST00000367253 KRTAP9-8Q9BYQ0 159 aa3.11□□□□□ -1.91
SYNE1-206ENST00000367253 KRTAP2-3P0C7H8 128 aa3.09□□□□□ -1.92
SYNE1-206ENST00000367253 KRTAP2-4Q9BYR9 128 aa3.09□□□□□ -1.92
SYNE1-206ENST00000367253 LCE3BQ5TA77 95 aa3.08□□□□□ -1.92
SYNE1-206ENST00000367253 MUC17Q685J3 4493 aa3.08□□□□□ -1.92
SYNE1-206ENST00000367253 RNF213Q63HN8 5207 aa3.05□□□□□ -1.92
SYNE1-206ENST00000367253 FLGP20930 4061 aaPredicted RBP3.05□□□□□ -1.92
SYNE1-206ENST00000367253 KRTAP9-3Q9BYQ3 159 aa3.02□□□□□ -1.93
SYNE1-206ENST00000367253 MT4P47944 62 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms