RNA–Protein interactions for RNA: ENST00000367042.5

CD46-208, Transcript of CD46 molecule, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD46, Length 3,326 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-208ENST00000367042 KRTAP3-2Q9BYR7 98 aa4.3□□□□□ -1.72
CD46-208ENST00000367042 SPINT4Q6UDR6 99 aa4.29□□□□□ -1.72
CD46-208ENST00000367042 ROMO1P60602 79 aa4.29□□□□□ -1.72
CD46-208ENST00000367042 RPL37P61927 97 aaKnown RBP4.28□□□□□ -1.72
CD46-208ENST00000367042 PKHD1L1Q86WI1 4243 aa4.26□□□□□ -1.73
CD46-208ENST00000367042 S4R3F8 94 aa4.25□□□□□ -1.73
CD46-208ENST00000367042 MYCBP2O75592 4640 aa4.24□□□□□ -1.73
CD46-208ENST00000367042 KRTAP10-4P60372 401 aaPredicted RBP4.24□□□□□ -1.73
CD46-208ENST00000367042 RYR3Q15413 4870 aa4.24□□□□□ -1.73
CD46-208ENST00000367042 C10orf95Q9H7T3 257 aa4.23□□□□□ -1.73
CD46-208ENST00000367042 KRTAP13-4Q3LI77 160 aa4.22□□□□□ -1.73
CD46-208ENST00000367042 LRP1Q07954 4544 aaKnown RBP4.2□□□□□ -1.74
CD46-208ENST00000367042 P0C880 135 aa4.2□□□□□ -1.74
CD46-208ENST00000367042 KRTAP10-6P60371 365 aaPredicted RBP4.19□□□□□ -1.74
CD46-208ENST00000367042 KRTAP10-8P60410 259 aa4.19□□□□□ -1.74
CD46-208ENST00000367042 HSPG2P98160 4391 aa4.19□□□□□ -1.74
CD46-208ENST00000367042 Q5VSD8 79 aa4.17□□□□□ -1.74
CD46-208ENST00000367042 XP32Q5T750 250 aa4.16□□□□□ -1.74
CD46-208ENST00000367042 TNXBP22105 4242 aa4.15□□□□□ -1.74
CD46-208ENST00000367042 TPRXLQ17RH7 258 aa4.15□□□□□ -1.75
CD46-208ENST00000367042 RYR1P21817 5038 aa4.14□□□□□ -1.75
CD46-208ENST00000367042 KRTAP12-2P59991 146 aa4.12□□□□□ -1.75
CD46-208ENST00000367042 KRTAP17-1Q9BYP8 105 aa4.1□□□□□ -1.75
CD46-208ENST00000367042 FAT3Q8TDW7 4589 aa4.1□□□□□ -1.75
CD46-208ENST00000367042 NDUFAF8A1L188 74 aa4.08□□□□□ -1.76
CD46-208ENST00000367042 EPPK1P58107 5090 aaKnown RBP4.07□□□□□ -1.76
CD46-208ENST00000367042 KIAA1109Q2LD37 5005 aa4.07□□□□□ -1.76
CD46-208ENST00000367042 M0QZ58 72 aa4.05□□□□□ -1.76
CD46-208ENST00000367042 KRTAP12-1P59990 96 aa4.04□□□□□ -1.76
CD46-208ENST00000367042 R4GN34 69 aa4.03□□□□□ -1.76
CD46-208ENST00000367042 LPAP08519 4548 aa4.02□□□□□ -1.77
CD46-208ENST00000367042 LRP2P98164 4655 aa4□□□□□ -1.77
CD46-208ENST00000367042 MT1HL1P0DM35 61 aa3.96□□□□□ -1.78
CD46-208ENST00000367042 KRTAP15-1Q3LI76 137 aa3.95□□□□□ -1.78
CD46-208ENST00000367042 J3QL48 77 aa3.93□□□□□ -1.78
CD46-208ENST00000367042 ABCA13Q86UQ4 5058 aa3.9□□□□□ -1.79
CD46-208ENST00000367042 CAMK2N1Q7Z7J9 78 aa3.89□□□□□ -1.79
CD46-208ENST00000367042 KRTAP4-5Q9BYR2 181 aa3.89□□□□□ -1.79
CD46-208ENST00000367042 LORP23490 312 aaPredicted RBP3.85□□□□□ -1.79
CD46-208ENST00000367042 SEC61BP60468 96 aaKnown RBP3.85□□□□□ -1.79
CD46-208ENST00000367042 PLAC4Q8WY50 150 aa3.84□□□□□ -1.79
CD46-208ENST00000367042 HERC2O95714 4834 aa3.82□□□□□ -1.8
CD46-208ENST00000367042 BIRC6Q9NR09 4857 aa3.8□□□□□ -1.8
CD46-208ENST00000367042 LUZP6Q538Z0 58 aa3.79□□□□□ -1.8
CD46-208ENST00000367042 KRTAP4-1Q9BYQ7 146 aa3.73□□□□□ -1.81
CD46-208ENST00000367042 MUC2Q02817 5179 aa3.73□□□□□ -1.81
CD46-208ENST00000367042 MUC17Q685J3 4493 aa3.72□□□□□ -1.81
CD46-208ENST00000367042 PCLOQ9Y6V0 5065 aa3.69□□□□□ -1.82
CD46-208ENST00000367042 PP632Q6XCG6 107 aa3.68□□□□□ -1.82
CD46-208ENST00000367042 LOC100996750A0A140TA64 210 aa3.67□□□□□ -1.82
CD46-208ENST00000367042 KRTAP4-6Q9BYQ5 205 aa3.67□□□□□ -1.82
CD46-208ENST00000367042 TNP1P09430 55 aa3.66□□□□□ -1.82
CD46-208ENST00000367042 LCE2BO14633 110 aa3.65□□□□□ -1.82
CD46-208ENST00000367042 HERC1Q15751 4861 aa3.65□□□□□ -1.83
CD46-208ENST00000367042 A0A0A0MQY5 61 aa3.64□□□□□ -1.83
CD46-208ENST00000367042 HMCN2Q8NDA2 5059 aa3.62□□□□□ -1.83
CD46-208ENST00000367042 M0R2T5 61 aa3.6□□□□□ -1.83
CD46-208ENST00000367042 KRTAP19-2Q3LHN2 52 aa3.6□□□□□ -1.83
CD46-208ENST00000367042 FLGP20930 4061 aaPredicted RBP3.53□□□□□ -1.84
CD46-208ENST00000367042 FAT4Q6V0I7 4981 aa3.53□□□□□ -1.84
CD46-208ENST00000367042 LCE2CQ5TA81 110 aa3.5□□□□□ -1.85
CD46-208ENST00000367042 LCE2AQ5TA79 106 aaPredicted RBP3.48□□□□□ -1.85
CD46-208ENST00000367042 UBR4Q5T4S7 5183 aa3.45□□□□□ -1.86
CD46-208ENST00000367042 KRTAP10-10P60014 251 aa3.44□□□□□ -1.86
CD46-208ENST00000367042 RNF213Q63HN8 5207 aa3.43□□□□□ -1.86
CD46-208ENST00000367042 LCE3AQ5TA76 89 aa3.42□□□□□ -1.86
CD46-208ENST00000367042 KRTAP23-1A1A580 65 aa3.39□□□□□ -1.87
CD46-208ENST00000367042 KRTAP19-1Q8IUB9 90 aa3.37□□□□□ -1.87
CD46-208ENST00000367042 SPRR2GQ9BYE4 73 aa3.35□□□□□ -1.87
CD46-208ENST00000367042 SPRR5A0A1B0GTR4 108 aa3.34□□□□□ -1.87
CD46-208ENST00000367042 MT1HP80294 61 aa3.32□□□□□ -1.88
CD46-208ENST00000367042 MT1FP04733 61 aa3.31□□□□□ -1.88
CD46-208ENST00000367042 MT2AP02795 61 aa3.28□□□□□ -1.88
CD46-208ENST00000367042 KRTAP12-3P60328 96 aa3.25□□□□□ -1.89
CD46-208ENST00000367042 KRTAP10-12P60413 245 aa3.25□□□□□ -1.89
CD46-208ENST00000367042 KRTAP9-8Q9BYQ0 159 aa3.24□□□□□ -1.89
CD46-208ENST00000367042 KRTAP8-1Q8IUC2 63 aa3.21□□□□□ -1.9
CD46-208ENST00000367042 KRTAP10-5P60370 271 aa3.19□□□□□ -1.9
CD46-208ENST00000367042 MT1XP80297 61 aa3.19□□□□□ -1.9
CD46-208ENST00000367042 PRO2289Q9P1D8 64 aa3.18□□□□□ -1.9
CD46-208ENST00000367042 KRTAP10-7P60409 375 aaPredicted RBP3.17□□□□□ -1.9
CD46-208ENST00000367042 MT1BP07438 61 aa3.17□□□□□ -1.9
CD46-208ENST00000367042 KRTAP4-8Q9BYQ9 185 aa3.17□□□□□ -1.9
CD46-208ENST00000367042 KRTAP19-8Q3LI54 63 aa3.15□□□□□ -1.9
CD46-208ENST00000367042 KMT2DO14686 5537 aa3.13□□□□□ -1.91
CD46-208ENST00000367042 USH2AO75445 5202 aa3.13□□□□□ -1.91
CD46-208ENST00000367042 INE1O15225 51 aa3.13□□□□□ -1.91
CD46-208ENST00000367042 KRTAP9-3Q9BYQ3 159 aa3.11□□□□□ -1.91
CD46-208ENST00000367042 KRTAP19-5Q3LI72 72 aa3.07□□□□□ -1.92
CD46-208ENST00000367042 KRTAP9-2Q9BYQ4 174 aa3.03□□□□□ -1.93
CD46-208ENST00000367042 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.02□□□□□ -1.93
CD46-208ENST00000367042 LCE3CQ5T5A8 94 aa3.01□□□□□ -1.93
CD46-208ENST00000367042 KRTAP4-8A0A0G2JLE6 195 aa3.01□□□□□ -1.93
CD46-208ENST00000367042 KRTAP9-6A0A140TA67 174 aa2.99□□□□□ -1.93
CD46-208ENST00000367042 KRTAP4-7Q9BYR0 210 aa2.94□□□□□ -1.94
CD46-208ENST00000367042 FSIP2Q5CZC0 6907 aa2.92□□□□□ -1.94
CD46-208ENST00000367042 KRTAP9-6A8MVA2 160 aa2.9□□□□□ -1.95
CD46-208ENST00000367042 KRTAP9-9Q9BYP9 154 aa2.88□□□□□ -1.95
CD46-208ENST00000367042 KRTAP9-4Q9BYQ2 154 aa2.88□□□□□ -1.95
CD46-208ENST00000367042 KRTAP4-12Q9BQ66 201 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms