RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 DNAH17Q9UFH2 4485 aa4.62□□□□□ -1.67
CUX1-203ENST00000360264 RELNP78509 3460 aa4.58□□□□□ -1.68
CUX1-203ENST00000360264 PKHD1L1Q86WI1 4243 aa4.55□□□□□ -1.68
CUX1-203ENST00000360264 CSMD1Q96PZ7 3565 aa4.55□□□□□ -1.68
CUX1-203ENST00000360264 ASPMQ8IZT6 3477 aa4.54□□□□□ -1.68
CUX1-203ENST00000360264 DNAH8Q96JB1 4490 aa4.54□□□□□ -1.68
CUX1-203ENST00000360264 INE1O15225 51 aa4.54□□□□□ -1.68
CUX1-203ENST00000360264 MUC3AQ02505 3323 aa4.54□□□□□ -1.68
CUX1-203ENST00000360264 CSMD3Q7Z407 3707 aa4.48□□□□□ -1.69
CUX1-203ENST00000360264 KRTAP23-1A1A580 65 aa4.48□□□□□ -1.69
CUX1-203ENST00000360264 KRTAP10-12P60413 245 aa4.47□□□□□ -1.69
CUX1-203ENST00000360264 DYNC1H1Q14204 4646 aaKnown RBP4.45□□□□□ -1.7
CUX1-203ENST00000360264 SACSQ9NZJ4 4579 aa4.45□□□□□ -1.7
CUX1-203ENST00000360264 DNAH9Q9NYC9 4486 aa4.43□□□□□ -1.7
CUX1-203ENST00000360264 KRTAP10-6P60371 365 aaPredicted RBP4.42□□□□□ -1.7
CUX1-203ENST00000360264 KRTAP3-1Q9BYR8 98 aa4.42□□□□□ -1.7
CUX1-203ENST00000360264 DYNC2H1Q8NCM8 4307 aaKnown RBP4.41□□□□□ -1.7
CUX1-203ENST00000360264 PKHD1P08F94 4074 aa4.41□□□□□ -1.7
CUX1-203ENST00000360264 DNAH5Q8TE73 4624 aa4.39□□□□□ -1.71
CUX1-203ENST00000360264 RYR1P21817 5038 aa4.39□□□□□ -1.71
CUX1-203ENST00000360264 FAT2Q9NYQ8 4349 aa4.37□□□□□ -1.71
CUX1-203ENST00000360264 CUBNO60494 3623 aa4.37□□□□□ -1.71
CUX1-203ENST00000360264 CRCT1Q9UGL9 99 aa4.36□□□□□ -1.71
CUX1-203ENST00000360264 PKD1P98161 4303 aa4.29□□□□□ -1.72
CUX1-203ENST00000360264 KRTAP12-3P60328 96 aa4.27□□□□□ -1.73
CUX1-203ENST00000360264 FAT3Q8TDW7 4589 aa4.27□□□□□ -1.73
CUX1-203ENST00000360264 CSMD2Q7Z408 3487 aa4.26□□□□□ -1.73
CUX1-203ENST00000360264 LRP1Q07954 4544 aaKnown RBP4.25□□□□□ -1.73
CUX1-203ENST00000360264 APOBP04114 4563 aaKnown RBP4.25□□□□□ -1.73
CUX1-203ENST00000360264 MT1HL1P0DM35 61 aa4.25□□□□□ -1.73
CUX1-203ENST00000360264 SVEP1Q4LDE5 3571 aa4.23□□□□□ -1.73
CUX1-203ENST00000360264 KRTAP3-2Q9BYR7 98 aa4.21□□□□□ -1.74
CUX1-203ENST00000360264 KRTAP3-3Q9BYR6 98 aa4.16□□□□□ -1.74
CUX1-203ENST00000360264 RYR3Q15413 4870 aa4.15□□□□□ -1.74
CUX1-203ENST00000360264 DNHD1Q96M86 4753 aa4.13□□□□□ -1.75
CUX1-203ENST00000360264 KRTAP8-1Q8IUC2 63 aa4.13□□□□□ -1.75
CUX1-203ENST00000360264 TNXBP22105 4242 aa4.11□□□□□ -1.75
CUX1-203ENST00000360264 LCE3AQ5TA76 89 aa4.09□□□□□ -1.75
CUX1-203ENST00000360264 FAT1Q14517 4588 aa4.05□□□□□ -1.76
CUX1-203ENST00000360264 KRTAP10-4P60372 401 aaPredicted RBP4.05□□□□□ -1.76
CUX1-203ENST00000360264 LRP1BQ9NZR2 4599 aa4.04□□□□□ -1.76
CUX1-203ENST00000360264 KRTAP10-5P60370 271 aa4.04□□□□□ -1.76
CUX1-203ENST00000360264 MYCBP2O75592 4640 aa4.04□□□□□ -1.76
CUX1-203ENST00000360264 STARD9Q9P2P6 4700 aa4.03□□□□□ -1.76
CUX1-203ENST00000360264 HSPG2P98160 4391 aa4□□□□□ -1.77
CUX1-203ENST00000360264 PCLOQ9Y6V0 5065 aa3.99□□□□□ -1.77
CUX1-203ENST00000360264 KRTAP4-5Q9BYR2 181 aa3.99□□□□□ -1.77
CUX1-203ENST00000360264 KRTAP19-4Q3LI73 84 aa3.98□□□□□ -1.77
CUX1-203ENST00000360264 BIRC6Q9NR09 4857 aa3.95□□□□□ -1.78
CUX1-203ENST00000360264 HYDINQ4G0P3 5121 aa3.93□□□□□ -1.78
CUX1-203ENST00000360264 RYR2Q92736 4967 aa3.92□□□□□ -1.78
CUX1-203ENST00000360264 LORP23490 312 aaPredicted RBP3.91□□□□□ -1.78
CUX1-203ENST00000360264 KRTAP10-7P60409 375 aaPredicted RBP3.85□□□□□ -1.79
CUX1-203ENST00000360264 SPRR2GQ9BYE4 73 aa3.81□□□□□ -1.8
CUX1-203ENST00000360264 MT1HP80294 61 aa3.78□□□□□ -1.8
CUX1-203ENST00000360264 SPRR2FQ96RM1 72 aa3.77□□□□□ -1.81
CUX1-203ENST00000360264 HERC1Q15751 4861 aa3.73□□□□□ -1.81
CUX1-203ENST00000360264 EPPK1P58107 5090 aaKnown RBP3.73□□□□□ -1.81
CUX1-203ENST00000360264 KRTAP19-5Q3LI72 72 aa3.7□□□□□ -1.82
CUX1-203ENST00000360264 LCE3CQ5T5A8 94 aa3.7□□□□□ -1.82
CUX1-203ENST00000360264 HERC2O95714 4834 aa3.68□□□□□ -1.82
CUX1-203ENST00000360264 MT2AP02795 61 aa3.66□□□□□ -1.82
CUX1-203ENST00000360264 LRP2P98164 4655 aa3.64□□□□□ -1.83
CUX1-203ENST00000360264 HMCN2Q8NDA2 5059 aa3.62□□□□□ -1.83
CUX1-203ENST00000360264 KRTAP4-1Q9BYQ7 146 aa3.61□□□□□ -1.83
CUX1-203ENST00000360264 RNF213Q63HN8 5207 aa3.6□□□□□ -1.83
CUX1-203ENST00000360264 MT1FP04733 61 aa3.58□□□□□ -1.84
CUX1-203ENST00000360264 SPRR2EP22531 72 aa3.54□□□□□ -1.84
CUX1-203ENST00000360264 SPRR2BP35325 72 aa3.54□□□□□ -1.84
CUX1-203ENST00000360264 SPRR2AP35326 72 aa3.54□□□□□ -1.84
CUX1-203ENST00000360264 KRTAP12-4P60329 112 aa3.52□□□□□ -1.85
CUX1-203ENST00000360264 ABCA13Q86UQ4 5058 aa3.51□□□□□ -1.85
CUX1-203ENST00000360264 UBR4Q5T4S7 5183 aa3.5□□□□□ -1.85
CUX1-203ENST00000360264 KIAA1109Q2LD37 5005 aa3.5□□□□□ -1.85
CUX1-203ENST00000360264 KMT2CQ8NEZ4 4911 aaKnown RBP3.5□□□□□ -1.85
CUX1-203ENST00000360264 KRTAP19-8Q3LI54 63 aa3.48□□□□□ -1.85
CUX1-203ENST00000360264 MT3P25713 68 aa3.47□□□□□ -1.85
CUX1-203ENST00000360264 LCE2BO14633 110 aa3.46□□□□□ -1.85
CUX1-203ENST00000360264 SPRR2DP22532 72 aa3.46□□□□□ -1.86
CUX1-203ENST00000360264 LCE3BQ5TA77 95 aa3.43□□□□□ -1.86
CUX1-203ENST00000360264 MT1GP13640 62 aa3.4□□□□□ -1.86
CUX1-203ENST00000360264 MUC17Q685J3 4493 aa3.38□□□□□ -1.87
CUX1-203ENST00000360264 MT1XP80297 61 aa3.37□□□□□ -1.87
CUX1-203ENST00000360264 LCE3DQ9BYE3 92 aa3.31□□□□□ -1.88
CUX1-203ENST00000360264 KRTAP19-1Q8IUB9 90 aa3.29□□□□□ -1.88
CUX1-203ENST00000360264 LCE2CQ5TA81 110 aa3.27□□□□□ -1.89
CUX1-203ENST00000360264 FAT4Q6V0I7 4981 aa3.27□□□□□ -1.89
CUX1-203ENST00000360264 LCE3EQ5T5B0 92 aa3.27□□□□□ -1.89
CUX1-203ENST00000360264 MT1BP07438 61 aa3.22□□□□□ -1.89
CUX1-203ENST00000360264 KRTAP19-3Q7Z4W3 81 aa3.21□□□□□ -1.9
CUX1-203ENST00000360264 KRTAP9-8Q9BYQ0 159 aa3.2□□□□□ -1.9
CUX1-203ENST00000360264 LCE2DQ5TA82 110 aaPredicted RBP3.19□□□□□ -1.9
CUX1-203ENST00000360264 KRTAP9-3Q9BYQ3 159 aa3.19□□□□□ -1.9
CUX1-203ENST00000360264 LPAP08519 4548 aa3.19□□□□□ -1.9
CUX1-203ENST00000360264 SPRR5A0A1B0GTR4 108 aa3.17□□□□□ -1.9
CUX1-203ENST00000360264 MT1LQ93083 61 aa3.16□□□□□ -1.9
CUX1-203ENST00000360264 KRTAP4-8A0A0G2JLE6 195 aa3.13□□□□□ -1.91
CUX1-203ENST00000360264 KRTAP4-8Q9BYQ9 185 aa3.13□□□□□ -1.91
CUX1-203ENST00000360264 MUC12Q9UKN1 5478 aa3.04□□□□□ -1.92
CUX1-203ENST00000360264 MT1EP04732 61 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms