RNA–Protein interactions for RNA: ENST00000356083.7

COL27A1-201, Transcript of collagen type XXVII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL27A1, Length 7,790 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-201ENST00000356083 MT1HL1P0DM35 61 aa7.34□□□□□ -1.23
COL27A1-201ENST00000356083 FRAS1Q86XX4 4008 aa7.31□□□□□ -1.24
COL27A1-201ENST00000356083 ALMS1Q8TCU4 4167 aa7.3□□□□□ -1.24
COL27A1-201ENST00000356083 KRTAP3-3Q9BYR6 98 aa7.26□□□□□ -1.25
COL27A1-201ENST00000356083 KRTAP3-2Q9BYR7 98 aa7.2□□□□□ -1.26
COL27A1-201ENST00000356083 LYSTQ99698 3801 aa7.18□□□□□ -1.26
COL27A1-201ENST00000356083 KRTAP10-7P60409 375 aaPredicted RBP7.08□□□□□ -1.28
COL27A1-201ENST00000356083 KMT2AQ03164 3969 aa7.08□□□□□ -1.28
COL27A1-201ENST00000356083 ANK2Q01484 3957 aa7.07□□□□□ -1.28
COL27A1-201ENST00000356083 SPRR2FQ96RM1 72 aa7.06□□□□□ -1.28
COL27A1-201ENST00000356083 DNAH10Q8IVF4 4471 aa7.04□□□□□ -1.28
COL27A1-201ENST00000356083 CMYA5Q8N3K9 4069 aa7.03□□□□□ -1.28
COL27A1-201ENST00000356083 DNAH2Q9P225 4427 aa6.99□□□□□ -1.29
COL27A1-201ENST00000356083 DNAH1Q9P2D7 4330 aa6.99□□□□□ -1.29
COL27A1-201ENST00000356083 VPS13BQ7Z7G8 4022 aa6.97□□□□□ -1.29
COL27A1-201ENST00000356083 DNAH7Q8WXX0 4024 aa6.92□□□□□ -1.3
COL27A1-201ENST00000356083 DNAH9Q9NYC9 4486 aa6.91□□□□□ -1.3
COL27A1-201ENST00000356083 KRTAP23-1A1A580 65 aa6.9□□□□□ -1.31
COL27A1-201ENST00000356083 KRTAP10-4P60372 401 aaPredicted RBP6.82□□□□□ -1.32
COL27A1-201ENST00000356083 DNAH3Q8TD57 4116 aa6.82□□□□□ -1.32
COL27A1-201ENST00000356083 SPRR2EP22531 72 aa6.77□□□□□ -1.32
COL27A1-201ENST00000356083 SPRR2BP35325 72 aa6.77□□□□□ -1.32
COL27A1-201ENST00000356083 SPRR2AP35326 72 aa6.77□□□□□ -1.32
COL27A1-201ENST00000356083 KRTAP4-1Q9BYQ7 146 aa6.76□□□□□ -1.33
COL27A1-201ENST00000356083 MT1HP80294 61 aa6.69□□□□□ -1.34
COL27A1-201ENST00000356083 KRTAP19-5Q3LI72 72 aa6.69□□□□□ -1.34
COL27A1-201ENST00000356083 LCE3BQ5TA77 95 aa6.63□□□□□ -1.35
COL27A1-201ENST00000356083 FAT2Q9NYQ8 4349 aa6.59□□□□□ -1.35
COL27A1-201ENST00000356083 DNAH8Q96JB1 4490 aa6.58□□□□□ -1.36
COL27A1-201ENST00000356083 DNAH6Q9C0G6 4158 aa6.57□□□□□ -1.36
COL27A1-201ENST00000356083 SPRR2DP22532 72 aa6.57□□□□□ -1.36
COL27A1-201ENST00000356083 PLECQ15149 4684 aaKnown RBP6.54□□□□□ -1.36
COL27A1-201ENST00000356083 PRKDCP78527 4128 aaKnown RBP6.53□□□□□ -1.36
COL27A1-201ENST00000356083 LCE3CQ5T5A8 94 aa6.52□□□□□ -1.37
COL27A1-201ENST00000356083 DNAH11Q96DT5 4516 aa6.51□□□□□ -1.37
COL27A1-201ENST00000356083 STARD9Q9P2P6 4700 aa6.49□□□□□ -1.37
COL27A1-201ENST00000356083 DNAH17Q9UFH2 4485 aa6.48□□□□□ -1.37
COL27A1-201ENST00000356083 DNAH5Q8TE73 4624 aa6.45□□□□□ -1.38
COL27A1-201ENST00000356083 LCE2BO14633 110 aa6.44□□□□□ -1.38
COL27A1-201ENST00000356083 MT2AP02795 61 aa6.44□□□□□ -1.38
COL27A1-201ENST00000356083 MT1FP04733 61 aa6.41□□□□□ -1.38
COL27A1-201ENST00000356083 KRTAP12-4P60329 112 aa6.39□□□□□ -1.39
COL27A1-201ENST00000356083 HECTD4Q9Y4D8 3996 aa6.36□□□□□ -1.39
COL27A1-201ENST00000356083 SPRR2GQ9BYE4 73 aa6.34□□□□□ -1.39
COL27A1-201ENST00000356083 VPS13DQ5THJ4 4388 aa6.33□□□□□ -1.4
COL27A1-201ENST00000356083 SPRR5A0A1B0GTR4 108 aa6.32□□□□□ -1.4
COL27A1-201ENST00000356083 LRP1BQ9NZR2 4599 aa6.31□□□□□ -1.4
COL27A1-201ENST00000356083 MT1GP13640 62 aa6.27□□□□□ -1.41
COL27A1-201ENST00000356083 DYNC2H1Q8NCM8 4307 aaKnown RBP6.24□□□□□ -1.41
COL27A1-201ENST00000356083 FAT1Q14517 4588 aa6.24□□□□□ -1.41
COL27A1-201ENST00000356083 LPAP08519 4548 aa6.18□□□□□ -1.42
COL27A1-201ENST00000356083 LCE2CQ5TA81 110 aa6.17□□□□□ -1.42
COL27A1-201ENST00000356083 FLGP20930 4061 aaPredicted RBP6.16□□□□□ -1.42
COL27A1-201ENST00000356083 FAT3Q8TDW7 4589 aa6.09□□□□□ -1.43
COL27A1-201ENST00000356083 SACSQ9NZJ4 4579 aa6.09□□□□□ -1.43
COL27A1-201ENST00000356083 APOBP04114 4563 aaKnown RBP6.05□□□□□ -1.44
COL27A1-201ENST00000356083 KRTAP4-8A0A0G2JLE6 195 aa6.05□□□□□ -1.44
COL27A1-201ENST00000356083 KRTAP4-8Q9BYQ9 185 aa6.05□□□□□ -1.44
COL27A1-201ENST00000356083 LCE2DQ5TA82 110 aaPredicted RBP6.04□□□□□ -1.44
COL27A1-201ENST00000356083 KRTAP19-4Q3LI73 84 aa6□□□□□ -1.45
COL27A1-201ENST00000356083 LCE3DQ9BYE3 92 aa5.98□□□□□ -1.45
COL27A1-201ENST00000356083 PKHD1P08F94 4074 aa5.97□□□□□ -1.45
COL27A1-201ENST00000356083 MT4P47944 62 aa5.96□□□□□ -1.46
COL27A1-201ENST00000356083 KRTAP17-1Q9BYP8 105 aa5.95□□□□□ -1.46
COL27A1-201ENST00000356083 PKD1P98161 4303 aa5.93□□□□□ -1.46
COL27A1-201ENST00000356083 LCE3EQ5T5B0 92 aa5.89□□□□□ -1.47
COL27A1-201ENST00000356083 DNHD1Q96M86 4753 aa5.87□□□□□ -1.47
COL27A1-201ENST00000356083 MYCBP2O75592 4640 aa5.87□□□□□ -1.47
COL27A1-201ENST00000356083 DYNC1H1Q14204 4646 aaKnown RBP5.87□□□□□ -1.47
COL27A1-201ENST00000356083 KRTAP19-1Q8IUB9 90 aa5.83□□□□□ -1.48
COL27A1-201ENST00000356083 HSPG2P98160 4391 aa5.81□□□□□ -1.48
COL27A1-201ENST00000356083 LRP1Q07954 4544 aaKnown RBP5.81□□□□□ -1.48
COL27A1-201ENST00000356083 LCE1BQ5T7P3 118 aa5.8□□□□□ -1.48
COL27A1-201ENST00000356083 PKHD1L1Q86WI1 4243 aa5.78□□□□□ -1.48
COL27A1-201ENST00000356083 KRTAP4-7Q9BYR0 210 aa5.78□□□□□ -1.48
COL27A1-201ENST00000356083 RYR1P21817 5038 aa5.75□□□□□ -1.49
COL27A1-201ENST00000356083 MT1XP80297 61 aa5.74□□□□□ -1.49
COL27A1-201ENST00000356083 LCE1DQ5T752 114 aa5.7□□□□□ -1.5
COL27A1-201ENST00000356083 TNXBP22105 4242 aa5.7□□□□□ -1.5
COL27A1-201ENST00000356083 KRTAP19-8Q3LI54 63 aa5.6□□□□□ -1.51
COL27A1-201ENST00000356083 LOC100996750A0A140TA64 210 aa5.57□□□□□ -1.52
COL27A1-201ENST00000356083 PRM1P04553 51 aa5.55□□□□□ -1.52
COL27A1-201ENST00000356083 MT1BP07438 61 aa5.54□□□□□ -1.52
COL27A1-201ENST00000356083 KRTAP9-8Q9BYQ0 159 aa5.54□□□□□ -1.52
COL27A1-201ENST00000356083 KRTAP9-2Q9BYQ4 174 aa5.53□□□□□ -1.52
COL27A1-201ENST00000356083 KRTAP19-3Q7Z4W3 81 aa5.49□□□□□ -1.53
COL27A1-201ENST00000356083 KRTAP4-3Q9BYR4 195 aa5.47□□□□□ -1.53
COL27A1-201ENST00000356083 KRTAP20-1Q3LI63 56 aa5.47□□□□□ -1.53
COL27A1-201ENST00000356083 LCE5AQ5TCM9 118 aa5.47□□□□□ -1.53
COL27A1-201ENST00000356083 SYNE2Q8WXH0 6885 aaKnown RBP5.42□□□□□ -1.54
COL27A1-201ENST00000356083 RYR3Q15413 4870 aa5.39□□□□□ -1.55
COL27A1-201ENST00000356083 MT3P25713 68 aa5.38□□□□□ -1.55
COL27A1-201ENST00000356083 KRTAP9-3Q9BYQ3 159 aa5.38□□□□□ -1.55
COL27A1-201ENST00000356083 KRTAP9-6A0A140TA67 174 aa5.38□□□□□ -1.55
COL27A1-201ENST00000356083 LRP2P98164 4655 aa5.34□□□□□ -1.55
COL27A1-201ENST00000356083 HYDINQ4G0P3 5121 aa5.33□□□□□ -1.56
COL27A1-201ENST00000356083 MT1LQ93083 61 aa5.32□□□□□ -1.56
COL27A1-201ENST00000356083 KRTAP4-9Q9BYQ8 210 aa5.26□□□□□ -1.57
COL27A1-201ENST00000356083 LCE1CQ5T751 118 aa5.24□□□□□ -1.57
COL27A1-201ENST00000356083 LCE1EQ5T753 118 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms