RNA–Protein interactions for RNA: ENST00000355815.8

SREBF1-202, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SREBF1, Length 4,253 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-202ENST00000355815 TPRXLQ17RH7 258 aa7.21□□□□□ -1.25
SREBF1-202ENST00000355815 DNAH17Q9UFH2 4485 aa7.18□□□□□ -1.26
SREBF1-202ENST00000355815 DNAH3Q8TD57 4116 aa7.17□□□□□ -1.26
SREBF1-202ENST00000355815 DNAH6Q9C0G6 4158 aa7.15□□□□□ -1.27
SREBF1-202ENST00000355815 DNAH2Q9P225 4427 aa7.14□□□□□ -1.27
SREBF1-202ENST00000355815 KRTAP12-2P59991 146 aa7.11□□□□□ -1.27
SREBF1-202ENST00000355815 TNP1P09430 55 aa7.08□□□□□ -1.28
SREBF1-202ENST00000355815 MYCBP2O75592 4640 aa7.08□□□□□ -1.28
SREBF1-202ENST00000355815 KRTAP10-4P60372 401 aaPredicted RBP7.04□□□□□ -1.28
SREBF1-202ENST00000355815 DYNC1H1Q14204 4646 aaKnown RBP7.04□□□□□ -1.28
SREBF1-202ENST00000355815 VPS13BQ7Z7G8 4022 aa7.01□□□□□ -1.29
SREBF1-202ENST00000355815 KRTAP13-4Q3LI77 160 aa7.01□□□□□ -1.29
SREBF1-202ENST00000355815 HYDINQ4G0P3 5121 aa7□□□□□ -1.29
SREBF1-202ENST00000355815 HECTD4Q9Y4D8 3996 aa6.99□□□□□ -1.29
SREBF1-202ENST00000355815 DYNC2H1Q8NCM8 4307 aaKnown RBP6.95□□□□□ -1.3
SREBF1-202ENST00000355815 KRTAP15-1Q3LI76 137 aa6.93□□□□□ -1.3
SREBF1-202ENST00000355815 KRTAP12-1P59990 96 aa6.93□□□□□ -1.3
SREBF1-202ENST00000355815 PP632Q6XCG6 107 aa6.92□□□□□ -1.3
SREBF1-202ENST00000355815 LRP1Q07954 4544 aaKnown RBP6.91□□□□□ -1.3
SREBF1-202ENST00000355815 PKHD1P08F94 4074 aa6.91□□□□□ -1.3
SREBF1-202ENST00000355815 FAT3Q8TDW7 4589 aa6.9□□□□□ -1.3
SREBF1-202ENST00000355815 KIAA1109Q2LD37 5005 aa6.9□□□□□ -1.3
SREBF1-202ENST00000355815 KRTAP4-5Q9BYR2 181 aa6.89□□□□□ -1.31
SREBF1-202ENST00000355815 KRTAP10-6P60371 365 aaPredicted RBP6.87□□□□□ -1.31
SREBF1-202ENST00000355815 MT1HL1P0DM35 61 aa6.87□□□□□ -1.31
SREBF1-202ENST00000355815 SACSQ9NZJ4 4579 aa6.85□□□□□ -1.31
SREBF1-202ENST00000355815 RYR1P21817 5038 aa6.84□□□□□ -1.31
SREBF1-202ENST00000355815 KRTAP3-3Q9BYR6 98 aa6.82□□□□□ -1.32
SREBF1-202ENST00000355815 APOBP04114 4563 aaKnown RBP6.8□□□□□ -1.32
SREBF1-202ENST00000355815 KRTAP3-2Q9BYR7 98 aa6.74□□□□□ -1.33
SREBF1-202ENST00000355815 ALMS1Q8TCU4 4167 aa6.73□□□□□ -1.33
SREBF1-202ENST00000355815 RYR3Q15413 4870 aa6.72□□□□□ -1.33
SREBF1-202ENST00000355815 KMT2CQ8NEZ4 4911 aaKnown RBP6.71□□□□□ -1.34
SREBF1-202ENST00000355815 FAT2Q9NYQ8 4349 aa6.7□□□□□ -1.34
SREBF1-202ENST00000355815 KRTAP17-1Q9BYP8 105 aa6.67□□□□□ -1.34
SREBF1-202ENST00000355815 KRTAP10-10P60014 251 aa6.6□□□□□ -1.35
SREBF1-202ENST00000355815 LRP2P98164 4655 aa6.57□□□□□ -1.36
SREBF1-202ENST00000355815 PKD1P98161 4303 aa6.55□□□□□ -1.36
SREBF1-202ENST00000355815 RYR2Q92736 4967 aa6.51□□□□□ -1.37
SREBF1-202ENST00000355815 LORP23490 312 aaPredicted RBP6.51□□□□□ -1.37
SREBF1-202ENST00000355815 KRTAP4-1Q9BYQ7 146 aa6.42□□□□□ -1.38
SREBF1-202ENST00000355815 HSPG2P98160 4391 aa6.38□□□□□ -1.39
SREBF1-202ENST00000355815 PRO2289Q9P1D8 64 aa6.38□□□□□ -1.39
SREBF1-202ENST00000355815 LPAP08519 4548 aa6.36□□□□□ -1.39
SREBF1-202ENST00000355815 HERC2O95714 4834 aa6.28□□□□□ -1.4
SREBF1-202ENST00000355815 EPPK1P58107 5090 aaKnown RBP6.26□□□□□ -1.41
SREBF1-202ENST00000355815 PKHD1L1Q86WI1 4243 aa6.2□□□□□ -1.42
SREBF1-202ENST00000355815 MUC2Q02817 5179 aa6.12□□□□□ -1.43
SREBF1-202ENST00000355815 ABCA13Q86UQ4 5058 aa6.12□□□□□ -1.43
SREBF1-202ENST00000355815 TNXBP22105 4242 aa6.08□□□□□ -1.44
SREBF1-202ENST00000355815 INE1O15225 51 aa6.03□□□□□ -1.44
SREBF1-202ENST00000355815 LCE3AQ5TA76 89 aa5.96□□□□□ -1.46
SREBF1-202ENST00000355815 RNF213Q63HN8 5207 aa5.92□□□□□ -1.46
SREBF1-202ENST00000355815 HERC1Q15751 4861 aa5.92□□□□□ -1.46
SREBF1-202ENST00000355815 FAT4Q6V0I7 4981 aa5.89□□□□□ -1.47
SREBF1-202ENST00000355815 PCLOQ9Y6V0 5065 aa5.88□□□□□ -1.47
SREBF1-202ENST00000355815 KRTAP12-3P60328 96 aa5.87□□□□□ -1.47
SREBF1-202ENST00000355815 KRTAP10-12P60413 245 aa5.87□□□□□ -1.47
SREBF1-202ENST00000355815 CRCT1Q9UGL9 99 aa5.85□□□□□ -1.47
SREBF1-202ENST00000355815 MT1HP80294 61 aa5.81□□□□□ -1.48
SREBF1-202ENST00000355815 MT1FP04733 61 aa5.77□□□□□ -1.49
SREBF1-202ENST00000355815 BIRC6Q9NR09 4857 aa5.76□□□□□ -1.49
SREBF1-202ENST00000355815 MT2AP02795 61 aa5.76□□□□□ -1.49
SREBF1-202ENST00000355815 KRTAP23-1A1A580 65 aa5.73□□□□□ -1.49
SREBF1-202ENST00000355815 UBR4Q5T4S7 5183 aa5.7□□□□□ -1.5
SREBF1-202ENST00000355815 KRTAP19-2Q3LHN2 52 aa5.68□□□□□ -1.5
SREBF1-202ENST00000355815 KRTAP19-1Q8IUB9 90 aa5.68□□□□□ -1.5
SREBF1-202ENST00000355815 SPRR2GQ9BYE4 73 aa5.66□□□□□ -1.5
SREBF1-202ENST00000355815 MUC17Q685J3 4493 aa5.64□□□□□ -1.51
SREBF1-202ENST00000355815 LCE2CQ5TA81 110 aa5.64□□□□□ -1.51
SREBF1-202ENST00000355815 FSIP2Q5CZC0 6907 aa5.61□□□□□ -1.51
SREBF1-202ENST00000355815 FLGP20930 4061 aaPredicted RBP5.53□□□□□ -1.52
SREBF1-202ENST00000355815 KRTAP10-5P60370 271 aa5.51□□□□□ -1.53
SREBF1-202ENST00000355815 HMCN2Q8NDA2 5059 aa5.49□□□□□ -1.53
SREBF1-202ENST00000355815 KRTAP9-8Q9BYQ0 159 aa5.48□□□□□ -1.53
SREBF1-202ENST00000355815 KRTAP10-7P60409 375 aaPredicted RBP5.43□□□□□ -1.54
SREBF1-202ENST00000355815 MT1BP07438 61 aa5.39□□□□□ -1.55
SREBF1-202ENST00000355815 SYNE1Q8NF91 8797 aaKnown RBP5.38□□□□□ -1.55
SREBF1-202ENST00000355815 MT1XP80297 61 aa5.37□□□□□ -1.55
SREBF1-202ENST00000355815 KRTAP8-1Q8IUC2 63 aa5.32□□□□□ -1.56
SREBF1-202ENST00000355815 KRTAP19-8Q3LI54 63 aa5.31□□□□□ -1.56
SREBF1-202ENST00000355815 KRTAP19-5Q3LI72 72 aa5.31□□□□□ -1.56
SREBF1-202ENST00000355815 OBSCNQ5VST9 7968 aa5.29□□□□□ -1.56
SREBF1-202ENST00000355815 KRTAP4-8A0A0G2JLE6 195 aa5.28□□□□□ -1.56
SREBF1-202ENST00000355815 KRTAP4-8Q9BYQ9 185 aa5.28□□□□□ -1.56
SREBF1-202ENST00000355815 USH2AO75445 5202 aa5.28□□□□□ -1.56
SREBF1-202ENST00000355815 SPRR5A0A1B0GTR4 108 aa5.25□□□□□ -1.57
SREBF1-202ENST00000355815 KRTAP9-3Q9BYQ3 159 aa5.25□□□□□ -1.57
SREBF1-202ENST00000355815 LCE3CQ5T5A8 94 aa5.17□□□□□ -1.58
SREBF1-202ENST00000355815 LCE2BO14633 110 aa5.17□□□□□ -1.58
SREBF1-202ENST00000355815 KMT2DO14686 5537 aa5.12□□□□□ -1.59
SREBF1-202ENST00000355815 KRTAP4-7Q9BYR0 210 aa5.06□□□□□ -1.6
SREBF1-202ENST00000355815 DSTQ03001 7570 aaKnown RBP4.99□□□□□ -1.61
SREBF1-202ENST00000355815 KRTAP19-4Q3LI73 84 aa4.97□□□□□ -1.61
SREBF1-202ENST00000355815 KRTAP12-4P60329 112 aa4.96□□□□□ -1.62
SREBF1-202ENST00000355815 SPRR2FQ96RM1 72 aa4.95□□□□□ -1.62
SREBF1-202ENST00000355815 FCGBPQ9Y6R7 5405 aaPredicted RBP4.89□□□□□ -1.63
SREBF1-202ENST00000355815 LCE3BQ5TA77 95 aa4.84□□□□□ -1.63
SREBF1-202ENST00000355815 LCE2AQ5TA79 106 aaPredicted RBP4.81□□□□□ -1.64
SREBF1-202ENST00000355815 MT1GP13640 62 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms