RNA–Protein interactions for RNA: ENST00000354901.8

SMG6-202, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best) BASIC

Gene SMG6, Length 3,473 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-202ENST00000354901 RPS29P62273 56 aaKnown RBP5.04□□□□□ -1.6
SMG6-202ENST00000354901 COX6B2Q6YFQ2 88 aa5.04□□□□□ -1.6
SMG6-202ENST00000354901 DYNC1H1Q14204 4646 aaKnown RBP5.02□□□□□ -1.61
SMG6-202ENST00000354901 SEC61BP60468 96 aaKnown RBP5□□□□□ -1.61
SMG6-202ENST00000354901 KRTAP10-4P60372 401 aaPredicted RBP4.99□□□□□ -1.61
SMG6-202ENST00000354901 RYR2Q92736 4967 aa4.98□□□□□ -1.61
SMG6-202ENST00000354901 RPL37P61927 97 aaKnown RBP4.98□□□□□ -1.61
SMG6-202ENST00000354901 KRTAP15-1Q3LI76 137 aa4.95□□□□□ -1.62
SMG6-202ENST00000354901 KRTAP3-1Q9BYR8 98 aa4.95□□□□□ -1.62
SMG6-202ENST00000354901 APOBP04114 4563 aaKnown RBP4.91□□□□□ -1.62
SMG6-202ENST00000354901 PKHD1L1Q86WI1 4243 aa4.91□□□□□ -1.62
SMG6-202ENST00000354901 KRTAP13-4Q3LI77 160 aa4.9□□□□□ -1.63
SMG6-202ENST00000354901 LRP1Q07954 4544 aaKnown RBP4.9□□□□□ -1.63
SMG6-202ENST00000354901 KMT2CQ8NEZ4 4911 aaKnown RBP4.88□□□□□ -1.63
SMG6-202ENST00000354901 Q5VSD8 79 aa4.87□□□□□ -1.63
SMG6-202ENST00000354901 MYCBP2O75592 4640 aa4.85□□□□□ -1.63
SMG6-202ENST00000354901 KRTAP10-8P60410 259 aa4.83□□□□□ -1.64
SMG6-202ENST00000354901 S4R3F8 94 aa4.82□□□□□ -1.64
SMG6-202ENST00000354901 KRTAP12-2P59991 146 aa4.79□□□□□ -1.64
SMG6-202ENST00000354901 KRTAP10-6P60371 365 aaPredicted RBP4.77□□□□□ -1.65
SMG6-202ENST00000354901 HSPG2P98160 4391 aa4.76□□□□□ -1.65
SMG6-202ENST00000354901 LCE2DQ5TA82 110 aaPredicted RBP4.76□□□□□ -1.65
SMG6-202ENST00000354901 KRTAP3-3Q9BYR6 98 aa4.76□□□□□ -1.65
SMG6-202ENST00000354901 KRTAP3-2Q9BYR7 98 aa4.76□□□□□ -1.65
SMG6-202ENST00000354901 XP32Q5T750 250 aa4.75□□□□□ -1.65
SMG6-202ENST00000354901 KRTAP17-1Q9BYP8 105 aa4.74□□□□□ -1.65
SMG6-202ENST00000354901 FAT3Q8TDW7 4589 aa4.74□□□□□ -1.65
SMG6-202ENST00000354901 RYR1P21817 5038 aa4.73□□□□□ -1.65
SMG6-202ENST00000354901 RYR3Q15413 4870 aa4.73□□□□□ -1.65
SMG6-202ENST00000354901 KIAA1109Q2LD37 5005 aa4.72□□□□□ -1.65
SMG6-202ENST00000354901 TNXBP22105 4242 aa4.71□□□□□ -1.66
SMG6-202ENST00000354901 PLAC4Q8WY50 150 aa4.7□□□□□ -1.66
SMG6-202ENST00000354901 MT1HL1P0DM35 61 aa4.69□□□□□ -1.66
SMG6-202ENST00000354901 KRTAP12-1P59990 96 aa4.65□□□□□ -1.66
SMG6-202ENST00000354901 LRP2P98164 4655 aa4.63□□□□□ -1.67
SMG6-202ENST00000354901 LPAP08519 4548 aa4.62□□□□□ -1.67
SMG6-202ENST00000354901 EPPK1P58107 5090 aaKnown RBP4.54□□□□□ -1.68
SMG6-202ENST00000354901 KRTAP4-5Q9BYR2 181 aa4.53□□□□□ -1.68
SMG6-202ENST00000354901 M0QZ58 72 aa4.53□□□□□ -1.68
SMG6-202ENST00000354901 CAMK2N1Q7Z7J9 78 aa4.52□□□□□ -1.69
SMG6-202ENST00000354901 ABCA13Q86UQ4 5058 aa4.52□□□□□ -1.69
SMG6-202ENST00000354901 R4GN34 69 aa4.46□□□□□ -1.7
SMG6-202ENST00000354901 BIRC6Q9NR09 4857 aa4.45□□□□□ -1.7
SMG6-202ENST00000354901 HERC2O95714 4834 aa4.43□□□□□ -1.7
SMG6-202ENST00000354901 LORP23490 312 aaPredicted RBP4.37□□□□□ -1.71
SMG6-202ENST00000354901 KRTAP4-1Q9BYQ7 146 aa4.37□□□□□ -1.71
SMG6-202ENST00000354901 MUC2Q02817 5179 aa4.32□□□□□ -1.72
SMG6-202ENST00000354901 MUC17Q685J3 4493 aa4.31□□□□□ -1.72
SMG6-202ENST00000354901 PRO2289Q9P1D8 64 aa4.29□□□□□ -1.72
SMG6-202ENST00000354901 KRTAP23-1A1A580 65 aa4.22□□□□□ -1.73
SMG6-202ENST00000354901 PP632Q6XCG6 107 aa4.21□□□□□ -1.74
SMG6-202ENST00000354901 LCE2BO14633 110 aa4.21□□□□□ -1.74
SMG6-202ENST00000354901 KRTAP19-2Q3LHN2 52 aa4.19□□□□□ -1.74
SMG6-202ENST00000354901 PCLOQ9Y6V0 5065 aa4.15□□□□□ -1.75
SMG6-202ENST00000354901 HERC1Q15751 4861 aa4.14□□□□□ -1.75
SMG6-202ENST00000354901 LCE2CQ5TA81 110 aa4.11□□□□□ -1.75
SMG6-202ENST00000354901 HMCN2Q8NDA2 5059 aa4.1□□□□□ -1.75
SMG6-202ENST00000354901 FAT4Q6V0I7 4981 aa4.1□□□□□ -1.75
SMG6-202ENST00000354901 TNP1P09430 55 aa4.1□□□□□ -1.75
SMG6-202ENST00000354901 FLGP20930 4061 aaPredicted RBP4.08□□□□□ -1.76
SMG6-202ENST00000354901 INE1O15225 51 aa4.06□□□□□ -1.76
SMG6-202ENST00000354901 M0R2T5 61 aa4.05□□□□□ -1.76
SMG6-202ENST00000354901 RNF213Q63HN8 5207 aa4.03□□□□□ -1.76
SMG6-202ENST00000354901 SPRR5A0A1B0GTR4 108 aa3.96□□□□□ -1.78
SMG6-202ENST00000354901 LCE2AQ5TA79 106 aaPredicted RBP3.96□□□□□ -1.78
SMG6-202ENST00000354901 UBR4Q5T4S7 5183 aa3.95□□□□□ -1.78
SMG6-202ENST00000354901 MT1HP80294 61 aa3.94□□□□□ -1.78
SMG6-202ENST00000354901 KRTAP10-10P60014 251 aa3.91□□□□□ -1.78
SMG6-202ENST00000354901 KRTAP19-1Q8IUB9 90 aa3.9□□□□□ -1.78
SMG6-202ENST00000354901 SPRR2GQ9BYE4 73 aa3.87□□□□□ -1.79
SMG6-202ENST00000354901 MT1FP04733 61 aa3.86□□□□□ -1.79
SMG6-202ENST00000354901 LCE3AQ5TA76 89 aa3.85□□□□□ -1.79
SMG6-202ENST00000354901 MT2AP02795 61 aa3.84□□□□□ -1.8
SMG6-202ENST00000354901 FSIP2Q5CZC0 6907 aa3.83□□□□□ -1.8
SMG6-202ENST00000354901 KRTAP9-8Q9BYQ0 159 aa3.81□□□□□ -1.8
SMG6-202ENST00000354901 KRTAP19-8Q3LI54 63 aa3.74□□□□□ -1.81
SMG6-202ENST00000354901 MT1BP07438 61 aa3.7□□□□□ -1.82
SMG6-202ENST00000354901 KRTAP10-5P60370 271 aa3.68□□□□□ -1.82
SMG6-202ENST00000354901 MT1XP80297 61 aa3.68□□□□□ -1.82
SMG6-202ENST00000354901 KRTAP9-3Q9BYQ3 159 aa3.68□□□□□ -1.82
SMG6-202ENST00000354901 KRTAP10-12P60413 245 aa3.64□□□□□ -1.83
SMG6-202ENST00000354901 KRTAP10-7P60409 375 aaPredicted RBP3.63□□□□□ -1.83
SMG6-202ENST00000354901 KRTAP8-1Q8IUC2 63 aa3.62□□□□□ -1.83
SMG6-202ENST00000354901 KRTAP12-3P60328 96 aa3.61□□□□□ -1.83
SMG6-202ENST00000354901 USH2AO75445 5202 aa3.61□□□□□ -1.83
SMG6-202ENST00000354901 KMT2DO14686 5537 aa3.55□□□□□ -1.84
SMG6-202ENST00000354901 OBSCNQ5VST9 7968 aa3.51□□□□□ -1.85
SMG6-202ENST00000354901 KRTAP19-5Q3LI72 72 aa3.47□□□□□ -1.85
SMG6-202ENST00000354901 KRTAP4-8A0A0G2JLE6 195 aa3.46□□□□□ -1.86
SMG6-202ENST00000354901 KRTAP4-8Q9BYQ9 185 aa3.46□□□□□ -1.86
SMG6-202ENST00000354901 LCE3CQ5T5A8 94 aa3.36□□□□□ -1.87
SMG6-202ENST00000354901 KRTAP19-6Q3LI70 58 aa3.34□□□□□ -1.87
SMG6-202ENST00000354901 KRTAP4-7Q9BYR0 210 aa3.33□□□□□ -1.88
SMG6-202ENST00000354901 KRTAP9-6A8MVA2 160 aa3.32□□□□□ -1.88
SMG6-202ENST00000354901 DSTQ03001 7570 aaKnown RBP3.32□□□□□ -1.88
SMG6-202ENST00000354901 KRTAP19-7Q3SYF9 63 aa3.27□□□□□ -1.89
SMG6-202ENST00000354901 KRTAP19-4Q3LI73 84 aa3.25□□□□□ -1.89
SMG6-202ENST00000354901 SYNE1Q8NF91 8797 aaKnown RBP3.24□□□□□ -1.89
SMG6-202ENST00000354901 SSPOA2VEC9 5147 aa3.22□□□□□ -1.89
SMG6-202ENST00000354901 CRCT1Q9UGL9 99 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 465.3 ms