RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 CSAG1Q6PB30 78 aa11.42□□□□□ -0.58
SHMT1-202ENST00000352886 KRTAP17-1Q9BYP8 105 aa11.42□□□□□ -0.58
SHMT1-202ENST00000352886 RPL37P61927 97 aaKnown RBP11.38□□□□□ -0.59
SHMT1-202ENST00000352886 XP32Q5T750 250 aa11.35□□□□□ -0.59
SHMT1-202ENST00000352886 MYCBP2O75592 4640 aa11.34□□□□□ -0.59
SHMT1-202ENST00000352886 KIAA1109Q2LD37 5005 aa11.34□□□□□ -0.59
SHMT1-202ENST00000352886 H0YAA0 97 aa11.27□□□□□ -0.6
SHMT1-202ENST00000352886 MT1HL1P0DM35 61 aa11.27□□□□□ -0.6
SHMT1-202ENST00000352886 A0A1B0GU33 70 aa11.26□□□□□ -0.61
SHMT1-202ENST00000352886 H1FX-AS1Q4G0G2 97 aa11.23□□□□□ -0.61
SHMT1-202ENST00000352886 KRTAP3-3Q9BYR6 98 aa11.14□□□□□ -0.63
SHMT1-202ENST00000352886 EPPK1P58107 5090 aaKnown RBP11.12□□□□□ -0.63
SHMT1-202ENST00000352886 S4R3F8 94 aa11.06□□□□□ -0.64
SHMT1-202ENST00000352886 KRTAP25-1Q3LHN0 102 aa11.02□□□□□ -0.65
SHMT1-202ENST00000352886 LPAP08519 4548 aa11.02□□□□□ -0.65
SHMT1-202ENST00000352886 LRP2P98164 4655 aa10.99□□□□□ -0.65
SHMT1-202ENST00000352886 KRTAP10-6P60371 365 aaPredicted RBP10.99□□□□□ -0.65
SHMT1-202ENST00000352886 TPRXLQ17RH7 258 aa10.99□□□□□ -0.65
SHMT1-202ENST00000352886 ROMO1P60602 79 aa10.93□□□□□ -0.66
SHMT1-202ENST00000352886 KRTAP3-2Q9BYR7 98 aa10.92□□□□□ -0.66
SHMT1-202ENST00000352886 ABCA13Q86UQ4 5058 aa10.89□□□□□ -0.67
SHMT1-202ENST00000352886 KRTAP4-5Q9BYR2 181 aa10.89□□□□□ -0.67
SHMT1-202ENST00000352886 KRTAP13-4Q3LI77 160 aa10.86□□□□□ -0.67
SHMT1-202ENST00000352886 K7ERS5 55 aa10.85□□□□□ -0.67
SHMT1-202ENST00000352886 P0C880 135 aa10.81□□□□□ -0.68
SHMT1-202ENST00000352886 A0A0D9SG42 100 aa10.76□□□□□ -0.69
SHMT1-202ENST00000352886 CRIPTQ9P021 101 aa10.74□□□□□ -0.69
SHMT1-202ENST00000352886 SEC61BP60468 96 aaKnown RBP10.57□□□□□ -0.72
SHMT1-202ENST00000352886 J3QL48 77 aa10.55□□□□□ -0.72
SHMT1-202ENST00000352886 MUC17Q685J3 4493 aa10.54□□□□□ -0.72
SHMT1-202ENST00000352886 HERC2O95714 4834 aa10.49□□□□□ -0.73
SHMT1-202ENST00000352886 KRTAP12-2P59991 146 aa10.49□□□□□ -0.73
SHMT1-202ENST00000352886 M0QZ58 72 aa10.45□□□□□ -0.74
SHMT1-202ENST00000352886 KRTAP4-1Q9BYQ7 146 aa10.44□□□□□ -0.74
SHMT1-202ENST00000352886 KRTAP12-1P59990 96 aa10.43□□□□□ -0.74
SHMT1-202ENST00000352886 SPINT4Q6UDR6 99 aa10.42□□□□□ -0.74
SHMT1-202ENST00000352886 R4GN34 69 aa10.27□□□□□ -0.77
SHMT1-202ENST00000352886 C10orf95Q9H7T3 257 aa10.25□□□□□ -0.77
SHMT1-202ENST00000352886 BIRC6Q9NR09 4857 aa10.23□□□□□ -0.77
SHMT1-202ENST00000352886 KRTAP19-2Q3LHN2 52 aa10.23□□□□□ -0.77
SHMT1-202ENST00000352886 KRTAP15-1Q3LI76 137 aa10.21□□□□□ -0.77
SHMT1-202ENST00000352886 NDUFAF8A1L188 74 aa10.19□□□□□ -0.78
SHMT1-202ENST00000352886 LORP23490 312 aaPredicted RBP10.17□□□□□ -0.78
SHMT1-202ENST00000352886 MUC2Q02817 5179 aa10.13□□□□□ -0.79
SHMT1-202ENST00000352886 HERC1Q15751 4861 aa9.99□□□□□ -0.81
SHMT1-202ENST00000352886 PCLOQ9Y6V0 5065 aa9.98□□□□□ -0.81
SHMT1-202ENST00000352886 FLGP20930 4061 aaPredicted RBP9.95□□□□□ -0.82
SHMT1-202ENST00000352886 HMCN2Q8NDA2 5059 aa9.92□□□□□ -0.82
SHMT1-202ENST00000352886 CAMK2N1Q7Z7J9 78 aa9.72□□□□□ -0.85
SHMT1-202ENST00000352886 LCE2CQ5TA81 110 aa9.68□□□□□ -0.86
SHMT1-202ENST00000352886 FAT4Q6V0I7 4981 aa9.68□□□□□ -0.86
SHMT1-202ENST00000352886 A0A0A0MQY5 61 aa9.49□□□□□ -0.89
SHMT1-202ENST00000352886 RNF213Q63HN8 5207 aa9.48□□□□□ -0.89
SHMT1-202ENST00000352886 M0R2T5 61 aa9.47□□□□□ -0.89
SHMT1-202ENST00000352886 UBR4Q5T4S7 5183 aa9.47□□□□□ -0.89
SHMT1-202ENST00000352886 PLAC4Q8WY50 150 aa9.45□□□□□ -0.9
SHMT1-202ENST00000352886 MT1HP80294 61 aa9.44□□□□□ -0.9
SHMT1-202ENST00000352886 PP632Q6XCG6 107 aa9.42□□□□□ -0.9
SHMT1-202ENST00000352886 SPRR2GQ9BYE4 73 aa9.4□□□□□ -0.9
SHMT1-202ENST00000352886 LUZP6Q538Z0 58 aa9.37□□□□□ -0.91
SHMT1-202ENST00000352886 KRTAP19-1Q8IUB9 90 aa9.36□□□□□ -0.91
SHMT1-202ENST00000352886 TNP1P09430 55 aa9.33□□□□□ -0.92
SHMT1-202ENST00000352886 MT1FP04733 61 aa9.25□□□□□ -0.93
SHMT1-202ENST00000352886 MT2AP02795 61 aa9.25□□□□□ -0.93
SHMT1-202ENST00000352886 KRTAP10-10P60014 251 aa9.24□□□□□ -0.93
SHMT1-202ENST00000352886 KRTAP9-8Q9BYQ0 159 aa9.21□□□□□ -0.94
SHMT1-202ENST00000352886 KRTAP23-1A1A580 65 aa9.15□□□□□ -0.94
SHMT1-202ENST00000352886 KRTAP19-8Q3LI54 63 aa9.01□□□□□ -0.97
SHMT1-202ENST00000352886 MT1BP07438 61 aa8.91□□□□□ -0.98
SHMT1-202ENST00000352886 LCE3AQ5TA76 89 aa8.86□□□□□ -0.99
SHMT1-202ENST00000352886 KRTAP9-3Q9BYQ3 159 aa8.82□□□□□ -1
SHMT1-202ENST00000352886 KRTAP10-5P60370 271 aa8.81□□□□□ -1
SHMT1-202ENST00000352886 MT1XP80297 61 aa8.8□□□□□ -1
SHMT1-202ENST00000352886 SPRR5A0A1B0GTR4 108 aa8.71□□□□□ -1.01
SHMT1-202ENST00000352886 KRTAP8-1Q8IUC2 63 aa8.63□□□□□ -1.03
SHMT1-202ENST00000352886 KRTAP10-12P60413 245 aa8.59□□□□□ -1.03
SHMT1-202ENST00000352886 KRTAP10-7P60409 375 aaPredicted RBP8.55□□□□□ -1.04
SHMT1-202ENST00000352886 PRO2289Q9P1D8 64 aa8.52□□□□□ -1.05
SHMT1-202ENST00000352886 LCE2BO14633 110 aa8.5□□□□□ -1.05
SHMT1-202ENST00000352886 LCE2AQ5TA79 106 aaPredicted RBP8.46□□□□□ -1.06
SHMT1-202ENST00000352886 KRTAP12-3P60328 96 aa8.45□□□□□ -1.06
SHMT1-202ENST00000352886 USH2AO75445 5202 aa8.37□□□□□ -1.07
SHMT1-202ENST00000352886 KRTAP19-5Q3LI72 72 aa8.15□□□□□ -1.1
SHMT1-202ENST00000352886 KMT2DO14686 5537 aa8.15□□□□□ -1.1
SHMT1-202ENST00000352886 INE1O15225 51 aa8.11□□□□□ -1.11
SHMT1-202ENST00000352886 KRTAP4-8A0A0G2JLE6 195 aa8.06□□□□□ -1.12
SHMT1-202ENST00000352886 KRTAP4-8Q9BYQ9 185 aa8.06□□□□□ -1.12
SHMT1-202ENST00000352886 LCE3CQ5T5A8 94 aa7.94□□□□□ -1.14
SHMT1-202ENST00000352886 SSPOA2VEC9 5147 aa7.85□□□□□ -1.15
SHMT1-202ENST00000352886 KRTAP19-7Q3SYF9 63 aa7.84□□□□□ -1.15
SHMT1-202ENST00000352886 KRTAP19-6Q3LI70 58 aa7.68□□□□□ -1.18
SHMT1-202ENST00000352886 FSIP2Q5CZC0 6907 aa7.67□□□□□ -1.18
SHMT1-202ENST00000352886 KRTAP9-6A8MVA2 160 aa7.64□□□□□ -1.19
SHMT1-202ENST00000352886 KRTAP4-7Q9BYR0 210 aa7.63□□□□□ -1.19
SHMT1-202ENST00000352886 MT1EP04732 61 aa7.63□□□□□ -1.19
SHMT1-202ENST00000352886 MT1LQ93083 61 aa7.6□□□□□ -1.19
SHMT1-202ENST00000352886 KRTAP19-4Q3LI73 84 aa7.54□□□□□ -1.2
SHMT1-202ENST00000352886 FCGBPQ9Y6R7 5405 aaPredicted RBP7.32□□□□□ -1.24
SHMT1-202ENST00000352886 LCE2DQ5TA82 110 aaPredicted RBP7.29□□□□□ -1.24
SHMT1-202ENST00000352886 KRTAP2-3P0C7H8 128 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms