RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 IGKV2-30P06310 120 aa4.97□□□□□ -1.61
USP4-202ENST00000351842 TPRXLQ17RH7 258 aa4.96□□□□□ -1.62
USP4-202ENST00000351842 H0Y9P7 68 aa4.95□□□□□ -1.62
USP4-202ENST00000351842 TP53AIP1Q9HCN2 124 aa4.95□□□□□ -1.62
USP4-202ENST00000351842 KRTAP16-1A8MUX0 517 aa4.94□□□□□ -1.62
USP4-202ENST00000351842 SPINK7P58062 85 aa4.94□□□□□ -1.62
USP4-202ENST00000351842 Q5W150 140 aa4.93□□□□□ -1.62
USP4-202ENST00000351842 FAT4Q6V0I7 4981 aa4.92□□□□□ -1.62
USP4-202ENST00000351842 COA5Q86WW8 74 aa4.91□□□□□ -1.62
USP4-202ENST00000351842 RPL37P61927 97 aaKnown RBP4.9□□□□□ -1.62
USP4-202ENST00000351842 LINC01558Q9Y6Z2 57 aa4.9□□□□□ -1.63
USP4-202ENST00000351842 C20orf166-AS1Q96NR2 134 aa4.87□□□□□ -1.63
USP4-202ENST00000351842 A8MUU9 505 aa4.87□□□□□ -1.63
USP4-202ENST00000351842 SEC61BP60468 96 aaKnown RBP4.87□□□□□ -1.63
USP4-202ENST00000351842 KRTAP4-1Q9BYQ7 146 aa4.84□□□□□ -1.63
USP4-202ENST00000351842 CSAG1Q6PB30 78 aa4.83□□□□□ -1.64
USP4-202ENST00000351842 COX6B2Q6YFQ2 88 aa4.82□□□□□ -1.64
USP4-202ENST00000351842 A0A0A0MQY5 61 aa4.78□□□□□ -1.64
USP4-202ENST00000351842 HRES1P13985 223 aa4.77□□□□□ -1.65
USP4-202ENST00000351842 MUC17Q685J3 4493 aa4.73□□□□□ -1.65
USP4-202ENST00000351842 ROMO1P60602 79 aa4.72□□□□□ -1.65
USP4-202ENST00000351842 DMAC1Q96GE9 116 aa4.72□□□□□ -1.65
USP4-202ENST00000351842 M0R2T5 61 aa4.69□□□□□ -1.66
USP4-202ENST00000351842 SPATA8Q6RVD6 105 aa4.68□□□□□ -1.66
USP4-202ENST00000351842 ACYP2P14621 99 aa4.68□□□□□ -1.66
USP4-202ENST00000351842 MIR22HGQ0VDD5 57 aa4.67□□□□□ -1.66
USP4-202ENST00000351842 A0A1B0GU69 56 aa4.63□□□□□ -1.67
USP4-202ENST00000351842 UQCR11O14957 56 aa4.61□□□□□ -1.67
USP4-202ENST00000351842 P0C880 135 aa4.61□□□□□ -1.67
USP4-202ENST00000351842 FSIP2Q5CZC0 6907 aa4.6□□□□□ -1.67
USP4-202ENST00000351842 KRTAP3-1Q9BYR8 98 aa4.6□□□□□ -1.67
USP4-202ENST00000351842 KRTAP25-1Q3LHN0 102 aa4.59□□□□□ -1.67
USP4-202ENST00000351842 FLGP20930 4061 aaPredicted RBP4.55□□□□□ -1.68
USP4-202ENST00000351842 H1FX-AS1Q4G0G2 97 aa4.55□□□□□ -1.68
USP4-202ENST00000351842 KRTAP19-2Q3LHN2 52 aa4.54□□□□□ -1.68
USP4-202ENST00000351842 S4R3F8 94 aa4.54□□□□□ -1.68
USP4-202ENST00000351842 LCE2CQ5TA81 110 aa4.53□□□□□ -1.68
USP4-202ENST00000351842 MT1HP80294 61 aa4.51□□□□□ -1.69
USP4-202ENST00000351842 NDUFAF8A1L188 74 aa4.47□□□□□ -1.69
USP4-202ENST00000351842 CRIPTQ9P021 101 aa4.46□□□□□ -1.7
USP4-202ENST00000351842 LCE2DQ5TA82 110 aaPredicted RBP4.44□□□□□ -1.7
USP4-202ENST00000351842 SPINT4Q6UDR6 99 aa4.42□□□□□ -1.7
USP4-202ENST00000351842 KRTAP3-3Q9BYR6 98 aa4.42□□□□□ -1.7
USP4-202ENST00000351842 KRTAP10-10P60014 251 aa4.38□□□□□ -1.71
USP4-202ENST00000351842 KRTAP3-2Q9BYR7 98 aa4.38□□□□□ -1.71
USP4-202ENST00000351842 USH2AO75445 5202 aa4.37□□□□□ -1.71
USP4-202ENST00000351842 KRTAP10-6P60371 365 aaPredicted RBP4.35□□□□□ -1.71
USP4-202ENST00000351842 LCE2AQ5TA79 106 aaPredicted RBP4.35□□□□□ -1.71
USP4-202ENST00000351842 H0YAA0 97 aa4.34□□□□□ -1.72
USP4-202ENST00000351842 LUZP6Q538Z0 58 aa4.33□□□□□ -1.72
USP4-202ENST00000351842 LORP23490 312 aaPredicted RBP4.31□□□□□ -1.72
USP4-202ENST00000351842 KRTAP15-1Q3LI76 137 aa4.31□□□□□ -1.72
USP4-202ENST00000351842 MT2AP02795 61 aa4.29□□□□□ -1.72
USP4-202ENST00000351842 MT1FP04733 61 aa4.29□□□□□ -1.72
USP4-202ENST00000351842 A0A1B0GU33 70 aa4.28□□□□□ -1.72
USP4-202ENST00000351842 KRTAP9-8Q9BYQ0 159 aa4.27□□□□□ -1.73
USP4-202ENST00000351842 K7ERS5 55 aa4.26□□□□□ -1.73
USP4-202ENST00000351842 A0A0D9SG42 100 aa4.25□□□□□ -1.73
USP4-202ENST00000351842 R4GN34 69 aa4.25□□□□□ -1.73
USP4-202ENST00000351842 M0QZ58 72 aa4.25□□□□□ -1.73
USP4-202ENST00000351842 C10orf95Q9H7T3 257 aa4.17□□□□□ -1.74
USP4-202ENST00000351842 KRTAP13-4Q3LI77 160 aa4.16□□□□□ -1.74
USP4-202ENST00000351842 KRTAP9-3Q9BYQ3 159 aa4.11□□□□□ -1.75
USP4-202ENST00000351842 LCE2BO14633 110 aa4.1□□□□□ -1.75
USP4-202ENST00000351842 KRTAP19-1Q8IUB9 90 aa4.1□□□□□ -1.75
USP4-202ENST00000351842 SSPOA2VEC9 5147 aa4.09□□□□□ -1.75
USP4-202ENST00000351842 KRTAP9-2Q9BYQ4 174 aa4.08□□□□□ -1.76
USP4-202ENST00000351842 CAMK2N1Q7Z7J9 78 aa4.02□□□□□ -1.77
USP4-202ENST00000351842 PLAC4Q8WY50 150 aa4.02□□□□□ -1.77
USP4-202ENST00000351842 SPRR2GQ9BYE4 73 aa4.02□□□□□ -1.77
USP4-202ENST00000351842 KRTAP12-1P59990 96 aa3.99□□□□□ -1.77
USP4-202ENST00000351842 KRTAP12-2P59991 146 aa3.99□□□□□ -1.77
USP4-202ENST00000351842 KMT2DO14686 5537 aa3.97□□□□□ -1.77
USP4-202ENST00000351842 MT1BP07438 61 aa3.97□□□□□ -1.77
USP4-202ENST00000351842 FCGBPQ9Y6R7 5405 aaPredicted RBP3.94□□□□□ -1.78
USP4-202ENST00000351842 SYNE2Q8WXH0 6885 aaKnown RBP3.93□□□□□ -1.78
USP4-202ENST00000351842 MACF1Q9UPN3 7388 aaKnown RBP3.92□□□□□ -1.78
USP4-202ENST00000351842 KRTAP19-8Q3LI54 63 aa3.9□□□□□ -1.78
USP4-202ENST00000351842 CRCT1Q9UGL9 99 aa3.89□□□□□ -1.79
USP4-202ENST00000351842 MT1XP80297 61 aa3.82□□□□□ -1.8
USP4-202ENST00000351842 KRTAP9-6A0A140TA67 174 aa3.8□□□□□ -1.8
USP4-202ENST00000351842 KRTAP10-5P60370 271 aa3.8□□□□□ -1.8
USP4-202ENST00000351842 PRO2289Q9P1D8 64 aa3.8□□□□□ -1.8
USP4-202ENST00000351842 KRTAP19-6Q3LI70 58 aa3.76□□□□□ -1.81
USP4-202ENST00000351842 KRTAP10-7P60409 375 aaPredicted RBP3.74□□□□□ -1.81
USP4-202ENST00000351842 KRTAP4-8A0A0G2JLE6 195 aa3.72□□□□□ -1.81
USP4-202ENST00000351842 KRTAP4-8Q9BYQ9 185 aa3.72□□□□□ -1.81
USP4-202ENST00000351842 MUC12Q9UKN1 5478 aa3.71□□□□□ -1.82
USP4-202ENST00000351842 TNP1P09430 55 aa3.67□□□□□ -1.82
USP4-202ENST00000351842 PP632Q6XCG6 107 aa3.67□□□□□ -1.82
USP4-202ENST00000351842 KRTAP23-1A1A580 65 aa3.66□□□□□ -1.82
USP4-202ENST00000351842 KRTAP10-12P60413 245 aa3.63□□□□□ -1.83
USP4-202ENST00000351842 MDN1Q9NU22 5596 aa3.62□□□□□ -1.83
USP4-202ENST00000351842 DSTQ03001 7570 aaKnown RBP3.61□□□□□ -1.83
USP4-202ENST00000351842 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.59□□□□□ -1.83
USP4-202ENST00000351842 LCE3AQ5TA76 89 aa3.59□□□□□ -1.84
USP4-202ENST00000351842 KRTAP8-1Q8IUC2 63 aa3.59□□□□□ -1.84
USP4-202ENST00000351842 SPRR2FQ96RM1 72 aa3.55□□□□□ -1.84
USP4-202ENST00000351842 SPRR5A0A1B0GTR4 108 aa3.51□□□□□ -1.85
USP4-202ENST00000351842 INE1O15225 51 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 212.1 ms