RNA–Protein interactions for RNA: ENST00000345851.7

TRIM3-201, Transcript of tripartite motif containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM3, Length 2,879 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-201ENST00000345851 PKHD1L1Q86WI1 4243 aa11.39□□□□□ -0.59
TRIM3-201ENST00000345851 KIAA1109Q2LD37 5005 aa11.37□□□□□ -0.59
TRIM3-201ENST00000345851 DMBT1Q9UGM3 2413 aaPredicted RBP11.36□□□□□ -0.59
TRIM3-201ENST00000345851 EPPK1P58107 5090 aaKnown RBP11.33□□□□□ -0.6
TRIM3-201ENST00000345851 C20orf166-AS1Q96NR2 134 aa11.31□□□□□ -0.6
TRIM3-201ENST00000345851 KRTAP17-1Q9BYP8 105 aa11.3□□□□□ -0.6
TRIM3-201ENST00000345851 RYR1P21817 5038 aa11.29□□□□□ -0.6
TRIM3-201ENST00000345851 A0A0D9SG42 100 aa11.25□□□□□ -0.61
TRIM3-201ENST00000345851 Q5VSD8 79 aa11.25□□□□□ -0.61
TRIM3-201ENST00000345851 MYCBP2O75592 4640 aa11.24□□□□□ -0.61
TRIM3-201ENST00000345851 SPINT4Q6UDR6 99 aa11.22□□□□□ -0.61
TRIM3-201ENST00000345851 RPS29P62273 56 aaKnown RBP11.2□□□□□ -0.62
TRIM3-201ENST00000345851 TNXBP22105 4242 aa11.19□□□□□ -0.62
TRIM3-201ENST00000345851 RPL37P61927 97 aaKnown RBP11.19□□□□□ -0.62
TRIM3-201ENST00000345851 TPRXLQ17RH7 258 aa11.17□□□□□ -0.62
TRIM3-201ENST00000345851 KRTAP13-4Q3LI77 160 aa11.16□□□□□ -0.62
TRIM3-201ENST00000345851 C10orf95Q9H7T3 257 aa11.14□□□□□ -0.63
TRIM3-201ENST00000345851 KRTAP10-6P60371 365 aaPredicted RBP11.1□□□□□ -0.63
TRIM3-201ENST00000345851 FAT3Q8TDW7 4589 aa11.08□□□□□ -0.64
TRIM3-201ENST00000345851 KRTAP3-3Q9BYR6 98 aa11□□□□□ -0.65
TRIM3-201ENST00000345851 NDUFAF8A1L188 74 aa10.98□□□□□ -0.65
TRIM3-201ENST00000345851 KRTAP10-8P60410 259 aa10.98□□□□□ -0.65
TRIM3-201ENST00000345851 KRTAP3-2Q9BYR7 98 aa10.96□□□□□ -0.65
TRIM3-201ENST00000345851 KRTAP4-5Q9BYR2 181 aa10.89□□□□□ -0.67
TRIM3-201ENST00000345851 KRTAP15-1Q3LI76 137 aa10.87□□□□□ -0.67
TRIM3-201ENST00000345851 S4R3F8 94 aa10.86□□□□□ -0.67
TRIM3-201ENST00000345851 KRTAP12-2P59991 146 aa10.84□□□□□ -0.67
TRIM3-201ENST00000345851 MT1HL1P0DM35 61 aa10.83□□□□□ -0.68
TRIM3-201ENST00000345851 ABCA13Q86UQ4 5058 aa10.8□□□□□ -0.68
TRIM3-201ENST00000345851 LPAP08519 4548 aa10.72□□□□□ -0.69
TRIM3-201ENST00000345851 LRP2P98164 4655 aa10.68□□□□□ -0.7
TRIM3-201ENST00000345851 KRTAP12-1P59990 96 aa10.67□□□□□ -0.7
TRIM3-201ENST00000345851 XP32Q5T750 250 aa10.63□□□□□ -0.71
TRIM3-201ENST00000345851 HERC2O95714 4834 aa10.61□□□□□ -0.71
TRIM3-201ENST00000345851 A0A0A0MQY5 61 aa10.47□□□□□ -0.73
TRIM3-201ENST00000345851 BIRC6Q9NR09 4857 aa10.46□□□□□ -0.74
TRIM3-201ENST00000345851 J3QL48 77 aa10.38□□□□□ -0.75
TRIM3-201ENST00000345851 M0QZ58 72 aa10.36□□□□□ -0.75
TRIM3-201ENST00000345851 PCLOQ9Y6V0 5065 aa10.26□□□□□ -0.77
TRIM3-201ENST00000345851 HERC1Q15751 4861 aa10.24□□□□□ -0.77
TRIM3-201ENST00000345851 MUC2Q02817 5179 aa10.18□□□□□ -0.78
TRIM3-201ENST00000345851 PLAC4Q8WY50 150 aa10.17□□□□□ -0.78
TRIM3-201ENST00000345851 R4GN34 69 aa10.14□□□□□ -0.79
TRIM3-201ENST00000345851 MUC17Q685J3 4493 aa10.05□□□□□ -0.8
TRIM3-201ENST00000345851 LUZP6Q538Z0 58 aa10.03□□□□□ -0.8
TRIM3-201ENST00000345851 KRTAP4-1Q9BYQ7 146 aa10.03□□□□□ -0.8
TRIM3-201ENST00000345851 LORP23490 312 aaPredicted RBP9.97□□□□□ -0.81
TRIM3-201ENST00000345851 SEC61BP60468 96 aaKnown RBP9.96□□□□□ -0.82
TRIM3-201ENST00000345851 HMCN2Q8NDA2 5059 aa9.9□□□□□ -0.82
TRIM3-201ENST00000345851 CAMK2N1Q7Z7J9 78 aa9.73□□□□□ -0.85
TRIM3-201ENST00000345851 RNF213Q63HN8 5207 aa9.71□□□□□ -0.86
TRIM3-201ENST00000345851 FAT4Q6V0I7 4981 aa9.7□□□□□ -0.86
TRIM3-201ENST00000345851 PP632Q6XCG6 107 aa9.68□□□□□ -0.86
TRIM3-201ENST00000345851 UBR4Q5T4S7 5183 aa9.67□□□□□ -0.86
TRIM3-201ENST00000345851 KRTAP19-2Q3LHN2 52 aa9.65□□□□□ -0.87
TRIM3-201ENST00000345851 FLGP20930 4061 aaPredicted RBP9.52□□□□□ -0.89
TRIM3-201ENST00000345851 TNP1P09430 55 aa9.34□□□□□ -0.91
TRIM3-201ENST00000345851 LCE2CQ5TA81 110 aa9.31□□□□□ -0.92
TRIM3-201ENST00000345851 SPRR5A0A1B0GTR4 108 aa9.24□□□□□ -0.93
TRIM3-201ENST00000345851 M0R2T5 61 aa9.18□□□□□ -0.94
TRIM3-201ENST00000345851 MT1HP80294 61 aa9.11□□□□□ -0.95
TRIM3-201ENST00000345851 KRTAP23-1A1A580 65 aa9.09□□□□□ -0.95
TRIM3-201ENST00000345851 MT1FP04733 61 aa8.86□□□□□ -0.99
TRIM3-201ENST00000345851 KRTAP10-10P60014 251 aa8.85□□□□□ -0.99
TRIM3-201ENST00000345851 LCE3AQ5TA76 89 aa8.85□□□□□ -0.99
TRIM3-201ENST00000345851 MT2AP02795 61 aa8.83□□□□□ -1
TRIM3-201ENST00000345851 KRTAP9-8Q9BYQ0 159 aa8.82□□□□□ -1
TRIM3-201ENST00000345851 PRO2289Q9P1D8 64 aa8.79□□□□□ -1
TRIM3-201ENST00000345851 KRTAP19-1Q8IUB9 90 aa8.79□□□□□ -1
TRIM3-201ENST00000345851 SPRR2GQ9BYE4 73 aa8.7□□□□□ -1.02
TRIM3-201ENST00000345851 INE1O15225 51 aa8.56□□□□□ -1.04
TRIM3-201ENST00000345851 USH2AO75445 5202 aa8.5□□□□□ -1.05
TRIM3-201ENST00000345851 KRTAP8-1Q8IUC2 63 aa8.48□□□□□ -1.05
TRIM3-201ENST00000345851 KRTAP9-3Q9BYQ3 159 aa8.45□□□□□ -1.06
TRIM3-201ENST00000345851 MT1BP07438 61 aa8.4□□□□□ -1.06
TRIM3-201ENST00000345851 LCE2AQ5TA79 106 aaPredicted RBP8.4□□□□□ -1.06
TRIM3-201ENST00000345851 KRTAP19-8Q3LI54 63 aa8.36□□□□□ -1.07
TRIM3-201ENST00000345851 KRTAP12-3P60328 96 aa8.36□□□□□ -1.07
TRIM3-201ENST00000345851 LCE2BO14633 110 aa8.27□□□□□ -1.09
TRIM3-201ENST00000345851 KRTAP10-12P60413 245 aa8.25□□□□□ -1.09
TRIM3-201ENST00000345851 KRTAP10-5P60370 271 aa8.24□□□□□ -1.09
TRIM3-201ENST00000345851 MT1XP80297 61 aa8.22□□□□□ -1.09
TRIM3-201ENST00000345851 FSIP2Q5CZC0 6907 aa8.15□□□□□ -1.1
TRIM3-201ENST00000345851 KRTAP10-7P60409 375 aaPredicted RBP8.12□□□□□ -1.11
TRIM3-201ENST00000345851 KMT2DO14686 5537 aa8.09□□□□□ -1.11
TRIM3-201ENST00000345851 SSPOA2VEC9 5147 aa7.87□□□□□ -1.15
TRIM3-201ENST00000345851 LCE3CQ5T5A8 94 aa7.86□□□□□ -1.15
TRIM3-201ENST00000345851 KRTAP19-5Q3LI72 72 aa7.86□□□□□ -1.15
TRIM3-201ENST00000345851 KRTAP4-8A0A0G2JLE6 195 aa7.74□□□□□ -1.17
TRIM3-201ENST00000345851 KRTAP4-8Q9BYQ9 185 aa7.74□□□□□ -1.17
TRIM3-201ENST00000345851 KRTAP9-6A8MVA2 160 aa7.73□□□□□ -1.17
TRIM3-201ENST00000345851 KRTAP4-7Q9BYR0 210 aa7.54□□□□□ -1.2
TRIM3-201ENST00000345851 KRTAP2-3P0C7H8 128 aa7.5□□□□□ -1.21
TRIM3-201ENST00000345851 KRTAP2-4Q9BYR9 128 aa7.5□□□□□ -1.21
TRIM3-201ENST00000345851 KRTAP2-1Q9BYU5 128 aa7.5□□□□□ -1.21
TRIM3-201ENST00000345851 KRTAP19-6Q3LI70 58 aa7.44□□□□□ -1.22
TRIM3-201ENST00000345851 FCGBPQ9Y6R7 5405 aaPredicted RBP7.43□□□□□ -1.22
TRIM3-201ENST00000345851 KRTAP19-7Q3SYF9 63 aa7.34□□□□□ -1.24
TRIM3-201ENST00000345851 LCE2DQ5TA82 110 aaPredicted RBP7.3□□□□□ -1.24
TRIM3-201ENST00000345851 MUC12Q9UKN1 5478 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms