RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 FLGP20930 4061 aaPredicted RBP2.84□□□□□ -1.95
VCAN-203ENST00000343200 KRTAP10-12P60413 245 aa2.83□□□□□ -1.96
VCAN-203ENST00000343200 KRTAP3-1Q9BYR8 98 aa2.79□□□□□ -1.96
VCAN-203ENST00000343200 VPS13BQ7Z7G8 4022 aa2.78□□□□□ -1.96
VCAN-203ENST00000343200 KRTAP12-3P60328 96 aa2.74□□□□□ -1.97
VCAN-203ENST00000343200 KRTAP3-2Q9BYR7 98 aa2.69□□□□□ -1.98
VCAN-203ENST00000343200 HUWE1Q7Z6Z7 4374 aaKnown RBP2.68□□□□□ -1.98
VCAN-203ENST00000343200 CRCT1Q9UGL9 99 aa2.66□□□□□ -1.98
VCAN-203ENST00000343200 KRTAP3-3Q9BYR6 98 aa2.65□□□□□ -1.98
VCAN-203ENST00000343200 DNAH2Q9P225 4427 aa2.64□□□□□ -1.99
VCAN-203ENST00000343200 KRTAP10-5P60370 271 aa2.64□□□□□ -1.99
VCAN-203ENST00000343200 PRKDCP78527 4128 aaKnown RBP2.62□□□□□ -1.99
VCAN-203ENST00000343200 LCE3AQ5TA76 89 aa2.61□□□□□ -1.99
VCAN-203ENST00000343200 KRTAP19-4Q3LI73 84 aa2.53□□□□□ -2
VCAN-203ENST00000343200 ANK3Q12955 4377 aaKnown RBP2.52□□□□□ -2.01
VCAN-203ENST00000343200 PKHD1P08F94 4074 aa2.5□□□□□ -2.01
VCAN-203ENST00000343200 MT3P25713 68 aa2.47□□□□□ -2.01
VCAN-203ENST00000343200 LCE3CQ5T5A8 94 aa2.41□□□□□ -2.02
VCAN-203ENST00000343200 KRTAP8-1Q8IUC2 63 aa2.41□□□□□ -2.02
VCAN-203ENST00000343200 PKHD1L1Q86WI1 4243 aa2.39□□□□□ -2.03
VCAN-203ENST00000343200 DNAH1Q9P2D7 4330 aa2.38□□□□□ -2.03
VCAN-203ENST00000343200 KRTAP4-5Q9BYR2 181 aa2.36□□□□□ -2.03
VCAN-203ENST00000343200 KRTAP10-7P60409 375 aaPredicted RBP2.35□□□□□ -2.03
VCAN-203ENST00000343200 DNAH17Q9UFH2 4485 aa2.32□□□□□ -2.04
VCAN-203ENST00000343200 KRTAP12-4P60329 112 aa2.3□□□□□ -2.04
VCAN-203ENST00000343200 LORP23490 312 aaPredicted RBP2.3□□□□□ -2.04
VCAN-203ENST00000343200 KRTAP10-4P60372 401 aaPredicted RBP2.3□□□□□ -2.04
VCAN-203ENST00000343200 MT1HL1P0DM35 61 aa2.3□□□□□ -2.04
VCAN-203ENST00000343200 SPRR2GQ9BYE4 73 aa2.28□□□□□ -2.04
VCAN-203ENST00000343200 KRTAP19-5Q3LI72 72 aa2.28□□□□□ -2.04
VCAN-203ENST00000343200 VPS13DQ5THJ4 4388 aa2.23□□□□□ -2.05
VCAN-203ENST00000343200 LCE3BQ5TA77 95 aa2.23□□□□□ -2.05
VCAN-203ENST00000343200 DNAH9Q9NYC9 4486 aa2.22□□□□□ -2.05
VCAN-203ENST00000343200 SPRR5A0A1B0GTR4 108 aa2.22□□□□□ -2.05
VCAN-203ENST00000343200 DYNC2H1Q8NCM8 4307 aaKnown RBP2.22□□□□□ -2.05
VCAN-203ENST00000343200 PKD1P98161 4303 aa2.2□□□□□ -2.06
VCAN-203ENST00000343200 DNAH10Q8IVF4 4471 aa2.2□□□□□ -2.06
VCAN-203ENST00000343200 FAT2Q9NYQ8 4349 aa2.18□□□□□ -2.06
VCAN-203ENST00000343200 HSPG2P98160 4391 aa2.18□□□□□ -2.06
VCAN-203ENST00000343200 KRTAP17-1Q9BYP8 105 aa2.17□□□□□ -2.06
VCAN-203ENST00000343200 SPRR2FQ96RM1 72 aa2.15□□□□□ -2.06
VCAN-203ENST00000343200 LCE3DQ9BYE3 92 aa2.14□□□□□ -2.07
VCAN-203ENST00000343200 LCE3EQ5T5B0 92 aa2.11□□□□□ -2.07
VCAN-203ENST00000343200 MT1HP80294 61 aa2.06□□□□□ -2.08
VCAN-203ENST00000343200 DNAH11Q96DT5 4516 aa2.06□□□□□ -2.08
VCAN-203ENST00000343200 DNAH8Q96JB1 4490 aa2.05□□□□□ -2.08
VCAN-203ENST00000343200 MT2AP02795 61 aa2.04□□□□□ -2.08
VCAN-203ENST00000343200 LPAP08519 4548 aa2.04□□□□□ -2.08
VCAN-203ENST00000343200 PRM1P04553 51 aa2.04□□□□□ -2.08
VCAN-203ENST00000343200 TNXBP22105 4242 aa2.03□□□□□ -2.08
VCAN-203ENST00000343200 FAT1Q14517 4588 aa2.03□□□□□ -2.08
VCAN-203ENST00000343200 MT1GP13640 62 aa2.02□□□□□ -2.09
VCAN-203ENST00000343200 STARD9Q9P2P6 4700 aa2.02□□□□□ -2.09
VCAN-203ENST00000343200 SACSQ9NZJ4 4579 aa2.01□□□□□ -2.09
VCAN-203ENST00000343200 FAT3Q8TDW7 4589 aa1.99□□□□□ -2.09
VCAN-203ENST00000343200 MT1FP04733 61 aa1.99□□□□□ -2.09
VCAN-203ENST00000343200 LRP1BQ9NZR2 4599 aa1.98□□□□□ -2.09
VCAN-203ENST00000343200 MT1XP80297 61 aa1.98□□□□□ -2.09
VCAN-203ENST00000343200 PLECQ15149 4684 aaKnown RBP1.98□□□□□ -2.09
VCAN-203ENST00000343200 LCE2BO14633 110 aa1.98□□□□□ -2.09
VCAN-203ENST00000343200 KRTAP19-8Q3LI54 63 aa1.98□□□□□ -2.09
VCAN-203ENST00000343200 KRTAP4-1Q9BYQ7 146 aa1.97□□□□□ -2.09
VCAN-203ENST00000343200 SPRR2EP22531 72 aa1.96□□□□□ -2.1
VCAN-203ENST00000343200 SPRR2BP35325 72 aa1.96□□□□□ -2.1
VCAN-203ENST00000343200 SPRR2AP35326 72 aa1.96□□□□□ -2.1
VCAN-203ENST00000343200 MT1LQ93083 61 aa1.94□□□□□ -2.1
VCAN-203ENST00000343200 SPRR2DP22532 72 aa1.92□□□□□ -2.1
VCAN-203ENST00000343200 KRTAP19-1Q8IUB9 90 aa1.91□□□□□ -2.1
VCAN-203ENST00000343200 OBSCNQ5VST9 7968 aa1.9□□□□□ -2.11
VCAN-203ENST00000343200 MUC17Q685J3 4493 aa1.89□□□□□ -2.11
VCAN-203ENST00000343200 LRP1Q07954 4544 aaKnown RBP1.89□□□□□ -2.11
VCAN-203ENST00000343200 MYCBP2O75592 4640 aa1.85□□□□□ -2.11
VCAN-203ENST00000343200 DNAH5Q8TE73 4624 aa1.85□□□□□ -2.11
VCAN-203ENST00000343200 KRTAP9-2Q9BYQ4 174 aa1.85□□□□□ -2.11
VCAN-203ENST00000343200 KRTAP19-3Q7Z4W3 81 aa1.84□□□□□ -2.11
VCAN-203ENST00000343200 DYNC1H1Q14204 4646 aaKnown RBP1.84□□□□□ -2.11
VCAN-203ENST00000343200 APOBP04114 4563 aaKnown RBP1.84□□□□□ -2.11
VCAN-203ENST00000343200 DNHD1Q96M86 4753 aa1.84□□□□□ -2.11
VCAN-203ENST00000343200 MT1EP04732 61 aa1.84□□□□□ -2.12
VCAN-203ENST00000343200 LCE2CQ5TA81 110 aa1.82□□□□□ -2.12
VCAN-203ENST00000343200 KRTAP2-3P0C7H8 128 aa1.82□□□□□ -2.12
VCAN-203ENST00000343200 KRTAP2-4Q9BYR9 128 aa1.82□□□□□ -2.12
VCAN-203ENST00000343200 KRTAP2-1Q9BYU5 128 aa1.82□□□□□ -2.12
VCAN-203ENST00000343200 MT1AP04731 61 aa1.8□□□□□ -2.12
VCAN-203ENST00000343200 KRTAP9-6A0A140TA67 174 aa1.79□□□□□ -2.12
VCAN-203ENST00000343200 RYR2Q92736 4967 aa1.78□□□□□ -2.12
VCAN-203ENST00000343200 BIRC6Q9NR09 4857 aa1.78□□□□□ -2.12
VCAN-203ENST00000343200 LCE1DQ5T752 114 aa1.77□□□□□ -2.13
VCAN-203ENST00000343200 KRTAP4-8A0A0G2JLE6 195 aa1.76□□□□□ -2.13
VCAN-203ENST00000343200 MT1BP07438 61 aa1.76□□□□□ -2.13
VCAN-203ENST00000343200 KRTAP4-8Q9BYQ9 185 aa1.76□□□□□ -2.13
VCAN-203ENST00000343200 MT4P47944 62 aa1.75□□□□□ -2.13
VCAN-203ENST00000343200 MT1MQ8N339 61 aa1.74□□□□□ -2.13
VCAN-203ENST00000343200 RYR1P21817 5038 aa1.74□□□□□ -2.13
VCAN-203ENST00000343200 LCE1BQ5T7P3 118 aa1.74□□□□□ -2.13
VCAN-203ENST00000343200 LCE2DQ5TA82 110 aaPredicted RBP1.73□□□□□ -2.13
VCAN-203ENST00000343200 KRTAP6-2Q3LI66 62 aa1.72□□□□□ -2.13
VCAN-203ENST00000343200 KRTAP9-8Q9BYQ0 159 aa1.72□□□□□ -2.13
VCAN-203ENST00000343200 KRTAP4-7Q9BYR0 210 aa1.71□□□□□ -2.13
VCAN-203ENST00000343200 HYDINQ4G0P3 5121 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 151 ms