RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 KRTAP13-4Q3LI77 160 aa7.4□□□□□ -1.22
CPSF7-201ENST00000340437 S4R3F8 94 aa7.4□□□□□ -1.23
CPSF7-201ENST00000340437 KMT2CQ8NEZ4 4911 aaKnown RBP7.39□□□□□ -1.23
CPSF7-201ENST00000340437 J3QL48 77 aa7.39□□□□□ -1.23
CPSF7-201ENST00000340437 SPINT4Q6UDR6 99 aa7.38□□□□□ -1.23
CPSF7-201ENST00000340437 H3BS24 57 aa7.38□□□□□ -1.23
CPSF7-201ENST00000340437 RPL37P61927 97 aaKnown RBP7.38□□□□□ -1.23
CPSF7-201ENST00000340437 P0C880 135 aa7.36□□□□□ -1.23
CPSF7-201ENST00000340437 HSPG2P98160 4391 aa7.36□□□□□ -1.23
CPSF7-201ENST00000340437 XP32Q5T750 250 aa7.36□□□□□ -1.23
CPSF7-201ENST00000340437 PKHD1L1Q86WI1 4243 aa7.36□□□□□ -1.23
CPSF7-201ENST00000340437 KRTAP3-3Q9BYR6 98 aa7.36□□□□□ -1.23
CPSF7-201ENST00000340437 KIAA1109Q2LD37 5005 aa7.35□□□□□ -1.23
CPSF7-201ENST00000340437 KRTAP10-6P60371 365 aaPredicted RBP7.35□□□□□ -1.23
CPSF7-201ENST00000340437 ROMO1P60602 79 aa7.34□□□□□ -1.23
CPSF7-201ENST00000340437 KRTAP21-3Q3LHN1 58 aa7.32□□□□□ -1.24
CPSF7-201ENST00000340437 C10orf95Q9H7T3 257 aa7.32□□□□□ -1.24
CPSF7-201ENST00000340437 RYR2Q92736 4967 aa7.28□□□□□ -1.24
CPSF7-201ENST00000340437 KRTAP3-2Q9BYR7 98 aa7.26□□□□□ -1.25
CPSF7-201ENST00000340437 RYR1P21817 5038 aa7.23□□□□□ -1.25
CPSF7-201ENST00000340437 KRTAP17-1Q9BYP8 105 aa7.21□□□□□ -1.26
CPSF7-201ENST00000340437 TPRXLQ17RH7 258 aa7.2□□□□□ -1.26
CPSF7-201ENST00000340437 TNXBP22105 4242 aa7.19□□□□□ -1.26
CPSF7-201ENST00000340437 KRTAP12-2P59991 146 aa7.19□□□□□ -1.26
CPSF7-201ENST00000340437 RYR3Q15413 4870 aa7.17□□□□□ -1.26
CPSF7-201ENST00000340437 LPAP08519 4548 aa7.17□□□□□ -1.26
CPSF7-201ENST00000340437 LRP2P98164 4655 aa7.14□□□□□ -1.27
CPSF7-201ENST00000340437 KRTAP4-5Q9BYR2 181 aa7.12□□□□□ -1.27
CPSF7-201ENST00000340437 MT1HL1P0DM35 61 aa7.07□□□□□ -1.28
CPSF7-201ENST00000340437 KRTAP12-1P59990 96 aa7.05□□□□□ -1.28
CPSF7-201ENST00000340437 M0QZ58 72 aa7.03□□□□□ -1.28
CPSF7-201ENST00000340437 R4GN34 69 aa7□□□□□ -1.29
CPSF7-201ENST00000340437 NDUFAF8A1L188 74 aa6.93□□□□□ -1.3
CPSF7-201ENST00000340437 ABCA13Q86UQ4 5058 aa6.93□□□□□ -1.3
CPSF7-201ENST00000340437 EPPK1P58107 5090 aaKnown RBP6.9□□□□□ -1.31
CPSF7-201ENST00000340437 SEC61BP60468 96 aaKnown RBP6.88□□□□□ -1.31
CPSF7-201ENST00000340437 M0R2T5 61 aa6.87□□□□□ -1.31
CPSF7-201ENST00000340437 CAMK2N1Q7Z7J9 78 aa6.86□□□□□ -1.31
CPSF7-201ENST00000340437 LORP23490 312 aaPredicted RBP6.84□□□□□ -1.31
CPSF7-201ENST00000340437 MUC2Q02817 5179 aa6.78□□□□□ -1.32
CPSF7-201ENST00000340437 KRTAP15-1Q3LI76 137 aa6.78□□□□□ -1.32
CPSF7-201ENST00000340437 KRTAP4-1Q9BYQ7 146 aa6.72□□□□□ -1.33
CPSF7-201ENST00000340437 HERC2O95714 4834 aa6.68□□□□□ -1.34
CPSF7-201ENST00000340437 PLAC4Q8WY50 150 aa6.58□□□□□ -1.36
CPSF7-201ENST00000340437 MUC17Q685J3 4493 aa6.52□□□□□ -1.36
CPSF7-201ENST00000340437 RNF213Q63HN8 5207 aa6.52□□□□□ -1.37
CPSF7-201ENST00000340437 HERC1Q15751 4861 aa6.5□□□□□ -1.37
CPSF7-201ENST00000340437 FAT4Q6V0I7 4981 aa6.45□□□□□ -1.38
CPSF7-201ENST00000340437 LUZP6Q538Z0 58 aa6.39□□□□□ -1.39
CPSF7-201ENST00000340437 KRTAP19-2Q3LHN2 52 aa6.37□□□□□ -1.39
CPSF7-201ENST00000340437 KRTAP10-10P60014 251 aa6.33□□□□□ -1.4
CPSF7-201ENST00000340437 TNP1P09430 55 aa6.31□□□□□ -1.4
CPSF7-201ENST00000340437 PCLOQ9Y6V0 5065 aa6.3□□□□□ -1.4
CPSF7-201ENST00000340437 PP632Q6XCG6 107 aa6.3□□□□□ -1.4
CPSF7-201ENST00000340437 UBR4Q5T4S7 5183 aa6.27□□□□□ -1.41
CPSF7-201ENST00000340437 FLGP20930 4061 aaPredicted RBP6.23□□□□□ -1.41
CPSF7-201ENST00000340437 BIRC6Q9NR09 4857 aa6.14□□□□□ -1.43
CPSF7-201ENST00000340437 FSIP2Q5CZC0 6907 aa6.08□□□□□ -1.44
CPSF7-201ENST00000340437 A0A0A0MQY5 61 aa6.07□□□□□ -1.44
CPSF7-201ENST00000340437 HMCN2Q8NDA2 5059 aa6.06□□□□□ -1.44
CPSF7-201ENST00000340437 LCE2CQ5TA81 110 aa6.03□□□□□ -1.44
CPSF7-201ENST00000340437 KRTAP19-1Q8IUB9 90 aa6.01□□□□□ -1.45
CPSF7-201ENST00000340437 LCE3AQ5TA76 89 aa5.99□□□□□ -1.45
CPSF7-201ENST00000340437 SPRR2GQ9BYE4 73 aa5.94□□□□□ -1.46
CPSF7-201ENST00000340437 MT1HP80294 61 aa5.93□□□□□ -1.46
CPSF7-201ENST00000340437 MT1FP04733 61 aa5.93□□□□□ -1.46
CPSF7-201ENST00000340437 MT2AP02795 61 aa5.88□□□□□ -1.47
CPSF7-201ENST00000340437 KRTAP23-1A1A580 65 aa5.85□□□□□ -1.47
CPSF7-201ENST00000340437 USH2AO75445 5202 aa5.83□□□□□ -1.48
CPSF7-201ENST00000340437 SPRR5A0A1B0GTR4 108 aa5.79□□□□□ -1.48
CPSF7-201ENST00000340437 KRTAP9-8Q9BYQ0 159 aa5.77□□□□□ -1.49
CPSF7-201ENST00000340437 KRTAP10-12P60413 245 aa5.68□□□□□ -1.5
CPSF7-201ENST00000340437 KRTAP10-5P60370 271 aa5.68□□□□□ -1.5
CPSF7-201ENST00000340437 MT1BP07438 61 aa5.67□□□□□ -1.5
CPSF7-201ENST00000340437 KRTAP12-3P60328 96 aa5.67□□□□□ -1.5
CPSF7-201ENST00000340437 MT1XP80297 61 aa5.67□□□□□ -1.5
CPSF7-201ENST00000340437 KRTAP10-7P60409 375 aaPredicted RBP5.64□□□□□ -1.51
CPSF7-201ENST00000340437 KMT2DO14686 5537 aa5.64□□□□□ -1.51
CPSF7-201ENST00000340437 KRTAP8-1Q8IUC2 63 aa5.62□□□□□ -1.51
CPSF7-201ENST00000340437 KRTAP19-8Q3LI54 63 aa5.61□□□□□ -1.51
CPSF7-201ENST00000340437 PRO2289Q9P1D8 64 aa5.55□□□□□ -1.52
CPSF7-201ENST00000340437 KRTAP9-3Q9BYQ3 159 aa5.5□□□□□ -1.53
CPSF7-201ENST00000340437 OBSCNQ5VST9 7968 aa5.46□□□□□ -1.53
CPSF7-201ENST00000340437 KRTAP19-5Q3LI72 72 aa5.43□□□□□ -1.54
CPSF7-201ENST00000340437 KRTAP4-8A0A0G2JLE6 195 aa5.4□□□□□ -1.54
CPSF7-201ENST00000340437 KRTAP4-8Q9BYQ9 185 aa5.4□□□□□ -1.54
CPSF7-201ENST00000340437 DSTQ03001 7570 aaKnown RBP5.38□□□□□ -1.55
CPSF7-201ENST00000340437 CRCT1Q9UGL9 99 aa5.37□□□□□ -1.55
CPSF7-201ENST00000340437 LCE2BO14633 110 aa5.36□□□□□ -1.55
CPSF7-201ENST00000340437 LCE3CQ5T5A8 94 aa5.28□□□□□ -1.56
CPSF7-201ENST00000340437 INE1O15225 51 aa5.25□□□□□ -1.57
CPSF7-201ENST00000340437 SYNE1Q8NF91 8797 aaKnown RBP5.24□□□□□ -1.57
CPSF7-201ENST00000340437 KRTAP4-7Q9BYR0 210 aa5.24□□□□□ -1.57
CPSF7-201ENST00000340437 FCGBPQ9Y6R7 5405 aaPredicted RBP5.19□□□□□ -1.58
CPSF7-201ENST00000340437 KRTAP9-6A8MVA2 160 aa5.14□□□□□ -1.59
CPSF7-201ENST00000340437 MUC12Q9UKN1 5478 aa5.06□□□□□ -1.6
CPSF7-201ENST00000340437 KRTAP19-7Q3SYF9 63 aa5.03□□□□□ -1.6
CPSF7-201ENST00000340437 LCE2AQ5TA79 106 aaPredicted RBP5□□□□□ -1.61
CPSF7-201ENST00000340437 SSPOA2VEC9 5147 aa4.96□□□□□ -1.62
CPSF7-201ENST00000340437 SYNE2Q8WXH0 6885 aaKnown RBP4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms