RNA–Protein interactions for RNA: ENST00000338888.3

RUNX3-202, Transcript of runt related transcription factor 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RUNX3, Length 2,629 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RUNX3-202ENST00000338888 TPRXLQ17RH7 258 aa10.62□□□□□ -0.71
RUNX3-202ENST00000338888 KRTAP13-4Q3LI77 160 aa10.62□□□□□ -0.71
RUNX3-202ENST00000338888 SPINT4Q6UDR6 99 aa10.61□□□□□ -0.71
RUNX3-202ENST00000338888 RYR3Q15413 4870 aa10.6□□□□□ -0.71
RUNX3-202ENST00000338888 KRTAP10-6P60371 365 aaPredicted RBP10.6□□□□□ -0.71
RUNX3-202ENST00000338888 DMBT1Q9UGM3 2413 aaPredicted RBP10.58□□□□□ -0.72
RUNX3-202ENST00000338888 C10orf95Q9H7T3 257 aa10.54□□□□□ -0.72
RUNX3-202ENST00000338888 KRTAP3-3Q9BYR6 98 aa10.52□□□□□ -0.73
RUNX3-202ENST00000338888 KRTAP10-4P60372 401 aaPredicted RBP10.51□□□□□ -0.73
RUNX3-202ENST00000338888 KRTAP3-2Q9BYR7 98 aa10.48□□□□□ -0.73
RUNX3-202ENST00000338888 PKHD1L1Q86WI1 4243 aa10.46□□□□□ -0.74
RUNX3-202ENST00000338888 NDUFAF8A1L188 74 aa10.37□□□□□ -0.75
RUNX3-202ENST00000338888 HSPG2P98160 4391 aa10.36□□□□□ -0.75
RUNX3-202ENST00000338888 KRTAP15-1Q3LI76 137 aa10.35□□□□□ -0.75
RUNX3-202ENST00000338888 S4R3F8 94 aa10.34□□□□□ -0.75
RUNX3-202ENST00000338888 Q5VSD8 79 aa10.33□□□□□ -0.76
RUNX3-202ENST00000338888 KRTAP12-2P59991 146 aa10.32□□□□□ -0.76
RUNX3-202ENST00000338888 LRP1Q07954 4544 aaKnown RBP10.3□□□□□ -0.76
RUNX3-202ENST00000338888 KRTAP10-8P60410 259 aa10.3□□□□□ -0.76
RUNX3-202ENST00000338888 KIAA1109Q2LD37 5005 aa10.27□□□□□ -0.77
RUNX3-202ENST00000338888 RYR1P21817 5038 aa10.26□□□□□ -0.77
RUNX3-202ENST00000338888 KRTAP17-1Q9BYP8 105 aa10.26□□□□□ -0.77
RUNX3-202ENST00000338888 EPPK1P58107 5090 aaKnown RBP10.24□□□□□ -0.77
RUNX3-202ENST00000338888 FAT3Q8TDW7 4589 aa10.18□□□□□ -0.78
RUNX3-202ENST00000338888 KRTAP12-1P59990 96 aa10.17□□□□□ -0.78
RUNX3-202ENST00000338888 TNXBP22105 4242 aa10.14□□□□□ -0.79
RUNX3-202ENST00000338888 MYCBP2O75592 4640 aa10.11□□□□□ -0.79
RUNX3-202ENST00000338888 XP32Q5T750 250 aa10.07□□□□□ -0.8
RUNX3-202ENST00000338888 MT1HL1P0DM35 61 aa9.93□□□□□ -0.82
RUNX3-202ENST00000338888 M0QZ58 72 aa9.92□□□□□ -0.82
RUNX3-202ENST00000338888 KRTAP4-5Q9BYR2 181 aa9.92□□□□□ -0.82
RUNX3-202ENST00000338888 LPAP08519 4548 aa9.83□□□□□ -0.84
RUNX3-202ENST00000338888 ABCA13Q86UQ4 5058 aa9.71□□□□□ -0.85
RUNX3-202ENST00000338888 PLAC4Q8WY50 150 aa9.68□□□□□ -0.86
RUNX3-202ENST00000338888 R4GN34 69 aa9.65□□□□□ -0.86
RUNX3-202ENST00000338888 LRP2P98164 4655 aa9.63□□□□□ -0.87
RUNX3-202ENST00000338888 HERC2O95714 4834 aa9.61□□□□□ -0.87
RUNX3-202ENST00000338888 J3QL48 77 aa9.57□□□□□ -0.88
RUNX3-202ENST00000338888 BIRC6Q9NR09 4857 aa9.56□□□□□ -0.88
RUNX3-202ENST00000338888 LORP23490 312 aaPredicted RBP9.49□□□□□ -0.89
RUNX3-202ENST00000338888 LUZP6Q538Z0 58 aa9.45□□□□□ -0.9
RUNX3-202ENST00000338888 A0A0A0MQY5 61 aa9.44□□□□□ -0.9
RUNX3-202ENST00000338888 PCLOQ9Y6V0 5065 aa9.28□□□□□ -0.92
RUNX3-202ENST00000338888 PP632Q6XCG6 107 aa9.26□□□□□ -0.93
RUNX3-202ENST00000338888 CAMK2N1Q7Z7J9 78 aa9.24□□□□□ -0.93
RUNX3-202ENST00000338888 HERC1Q15751 4861 aa9.22□□□□□ -0.93
RUNX3-202ENST00000338888 SEC61BP60468 96 aaKnown RBP9.2□□□□□ -0.94
RUNX3-202ENST00000338888 KRTAP4-1Q9BYQ7 146 aa9.13□□□□□ -0.95
RUNX3-202ENST00000338888 MUC17Q685J3 4493 aa9.12□□□□□ -0.95
RUNX3-202ENST00000338888 MUC2Q02817 5179 aa9.08□□□□□ -0.96
RUNX3-202ENST00000338888 HMCN2Q8NDA2 5059 aa9□□□□□ -0.97
RUNX3-202ENST00000338888 TNP1P09430 55 aa8.91□□□□□ -0.98
RUNX3-202ENST00000338888 KRTAP19-2Q3LHN2 52 aa8.89□□□□□ -0.99
RUNX3-202ENST00000338888 SPRR5A0A1B0GTR4 108 aa8.84□□□□□ -0.99
RUNX3-202ENST00000338888 KRTAP23-1A1A580 65 aa8.77□□□□□ -1.01
RUNX3-202ENST00000338888 UBR4Q5T4S7 5183 aa8.72□□□□□ -1.01
RUNX3-202ENST00000338888 RNF213Q63HN8 5207 aa8.69□□□□□ -1.02
RUNX3-202ENST00000338888 FAT4Q6V0I7 4981 aa8.66□□□□□ -1.02
RUNX3-202ENST00000338888 FLGP20930 4061 aaPredicted RBP8.64□□□□□ -1.03
RUNX3-202ENST00000338888 LCE2CQ5TA81 110 aa8.52□□□□□ -1.05
RUNX3-202ENST00000338888 M0R2T5 61 aa8.43□□□□□ -1.06
RUNX3-202ENST00000338888 LCE3AQ5TA76 89 aa8.42□□□□□ -1.06
RUNX3-202ENST00000338888 PRO2289Q9P1D8 64 aa8.36□□□□□ -1.07
RUNX3-202ENST00000338888 MT1HP80294 61 aa8.35□□□□□ -1.07
RUNX3-202ENST00000338888 SPRR2GQ9BYE4 73 aa8.33□□□□□ -1.08
RUNX3-202ENST00000338888 KRTAP19-1Q8IUB9 90 aa8.31□□□□□ -1.08
RUNX3-202ENST00000338888 INE1O15225 51 aa8.17□□□□□ -1.1
RUNX3-202ENST00000338888 KRTAP8-1Q8IUC2 63 aa8.13□□□□□ -1.11
RUNX3-202ENST00000338888 KRTAP10-10P60014 251 aa8.11□□□□□ -1.11
RUNX3-202ENST00000338888 MT2AP02795 61 aa8.09□□□□□ -1.11
RUNX3-202ENST00000338888 MT1FP04733 61 aa8.09□□□□□ -1.11
RUNX3-202ENST00000338888 KRTAP9-8Q9BYQ0 159 aa8.07□□□□□ -1.12
RUNX3-202ENST00000338888 KRTAP12-3P60328 96 aa7.97□□□□□ -1.13
RUNX3-202ENST00000338888 KRTAP10-5P60370 271 aa7.9□□□□□ -1.14
RUNX3-202ENST00000338888 KRTAP10-12P60413 245 aa7.88□□□□□ -1.15
RUNX3-202ENST00000338888 MT1XP80297 61 aa7.87□□□□□ -1.15
RUNX3-202ENST00000338888 KRTAP19-8Q3LI54 63 aa7.84□□□□□ -1.15
RUNX3-202ENST00000338888 MT1BP07438 61 aa7.8□□□□□ -1.16
RUNX3-202ENST00000338888 KRTAP10-7P60409 375 aaPredicted RBP7.75□□□□□ -1.17
RUNX3-202ENST00000338888 KRTAP9-3Q9BYQ3 159 aa7.75□□□□□ -1.17
RUNX3-202ENST00000338888 LCE2AQ5TA79 106 aaPredicted RBP7.73□□□□□ -1.17
RUNX3-202ENST00000338888 USH2AO75445 5202 aa7.56□□□□□ -1.2
RUNX3-202ENST00000338888 LCE2BO14633 110 aa7.55□□□□□ -1.2
RUNX3-202ENST00000338888 LCE3CQ5T5A8 94 aa7.52□□□□□ -1.21
RUNX3-202ENST00000338888 KRTAP19-5Q3LI72 72 aa7.49□□□□□ -1.21
RUNX3-202ENST00000338888 KRTAP9-6A8MVA2 160 aa7.36□□□□□ -1.23
RUNX3-202ENST00000338888 KMT2DO14686 5537 aa7.34□□□□□ -1.23
RUNX3-202ENST00000338888 KRTAP4-8A0A0G2JLE6 195 aa7.2□□□□□ -1.26
RUNX3-202ENST00000338888 KRTAP4-8Q9BYQ9 185 aa7.2□□□□□ -1.26
RUNX3-202ENST00000338888 FSIP2Q5CZC0 6907 aa7.2□□□□□ -1.26
RUNX3-202ENST00000338888 KRTAP2-3P0C7H8 128 aa7.19□□□□□ -1.26
RUNX3-202ENST00000338888 KRTAP2-4Q9BYR9 128 aa7.19□□□□□ -1.26
RUNX3-202ENST00000338888 KRTAP2-1Q9BYU5 128 aa7.19□□□□□ -1.26
RUNX3-202ENST00000338888 KRTAP4-7Q9BYR0 210 aa7.15□□□□□ -1.26
RUNX3-202ENST00000338888 SSPOA2VEC9 5147 aa7.1□□□□□ -1.27
RUNX3-202ENST00000338888 KRTAP19-7Q3SYF9 63 aa7.01□□□□□ -1.29
RUNX3-202ENST00000338888 KRTAP19-6Q3LI70 58 aa6.88□□□□□ -1.31
RUNX3-202ENST00000338888 MT1LQ93083 61 aa6.83□□□□□ -1.32
RUNX3-202ENST00000338888 LCE2DQ5TA82 110 aaPredicted RBP6.82□□□□□ -1.32
RUNX3-202ENST00000338888 MT1EP04732 61 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms