RNA–Protein interactions for RNA: ENST00000336216.8

HMG20A-201, Transcript of high mobility group 20A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMG20A, Length 4,046 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMG20A-201ENST00000336216 ROMO1P60602 79 aa3.48□□□□□ -1.85
HMG20A-201ENST00000336216 R4GN34 69 aa3.48□□□□□ -1.85
HMG20A-201ENST00000336216 A8MUU9 505 aa3.48□□□□□ -1.85
HMG20A-201ENST00000336216 CAMK2N1Q7Z7J9 78 aa3.47□□□□□ -1.85
HMG20A-201ENST00000336216 FLGP20930 4061 aaPredicted RBP3.47□□□□□ -1.85
HMG20A-201ENST00000336216 A0A1B0GVY2 172 aa3.46□□□□□ -1.86
HMG20A-201ENST00000336216 SEC61BP60468 96 aaKnown RBP3.46□□□□□ -1.86
HMG20A-201ENST00000336216 KMT2CQ8NEZ4 4911 aaKnown RBP3.45□□□□□ -1.86
HMG20A-201ENST00000336216 RPL37P61927 97 aaKnown RBP3.45□□□□□ -1.86
HMG20A-201ENST00000336216 M0QZ58 72 aa3.45□□□□□ -1.86
HMG20A-201ENST00000336216 C10orf95Q9H7T3 257 aa3.44□□□□□ -1.86
HMG20A-201ENST00000336216 RYR2Q92736 4967 aa3.43□□□□□ -1.86
HMG20A-201ENST00000336216 RPS29P62273 56 aaKnown RBP3.43□□□□□ -1.86
HMG20A-201ENST00000336216 C20orf166-AS1Q96NR2 134 aa3.42□□□□□ -1.86
HMG20A-201ENST00000336216 NDUFAF8A1L188 74 aa3.41□□□□□ -1.86
HMG20A-201ENST00000336216 XP32Q5T750 250 aa3.41□□□□□ -1.86
HMG20A-201ENST00000336216 MYCBP2O75592 4640 aa3.41□□□□□ -1.86
HMG20A-201ENST00000336216 DYNC1H1Q14204 4646 aaKnown RBP3.4□□□□□ -1.86
HMG20A-201ENST00000336216 FAT1Q14517 4588 aa3.4□□□□□ -1.87
HMG20A-201ENST00000336216 KRTAP3-1Q9BYR8 98 aa3.37□□□□□ -1.87
HMG20A-201ENST00000336216 RYR3Q15413 4870 aa3.35□□□□□ -1.87
HMG20A-201ENST00000336216 KRTAP10-8P60410 259 aa3.33□□□□□ -1.88
HMG20A-201ENST00000336216 P0C880 135 aa3.32□□□□□ -1.88
HMG20A-201ENST00000336216 TPRXLQ17RH7 258 aa3.3□□□□□ -1.88
HMG20A-201ENST00000336216 KRTAP10-4P60372 401 aaPredicted RBP3.29□□□□□ -1.88
HMG20A-201ENST00000336216 KRTAP13-4Q3LI77 160 aa3.29□□□□□ -1.88
HMG20A-201ENST00000336216 LRP1Q07954 4544 aaKnown RBP3.29□□□□□ -1.88
HMG20A-201ENST00000336216 KIAA1109Q2LD37 5005 aa3.26□□□□□ -1.89
HMG20A-201ENST00000336216 LCE2DQ5TA82 110 aaPredicted RBP3.26□□□□□ -1.89
HMG20A-201ENST00000336216 KRTAP17-1Q9BYP8 105 aa3.25□□□□□ -1.89
HMG20A-201ENST00000336216 KRTAP4-5Q9BYR2 181 aa3.25□□□□□ -1.89
HMG20A-201ENST00000336216 RYR1P21817 5038 aa3.25□□□□□ -1.89
HMG20A-201ENST00000336216 KRTAP12-2P59991 146 aa3.24□□□□□ -1.89
HMG20A-201ENST00000336216 EPPK1P58107 5090 aaKnown RBP3.24□□□□□ -1.89
HMG20A-201ENST00000336216 MUC17Q685J3 4493 aa3.24□□□□□ -1.89
HMG20A-201ENST00000336216 KRTAP10-6P60371 365 aaPredicted RBP3.24□□□□□ -1.89
HMG20A-201ENST00000336216 PLAC4Q8WY50 150 aa3.21□□□□□ -1.9
HMG20A-201ENST00000336216 MT1HL1P0DM35 61 aa3.19□□□□□ -1.9
HMG20A-201ENST00000336216 KRTAP3-3Q9BYR6 98 aa3.18□□□□□ -1.9
HMG20A-201ENST00000336216 KRTAP3-2Q9BYR7 98 aa3.17□□□□□ -1.9
HMG20A-201ENST00000336216 BIRC6Q9NR09 4857 aa3.17□□□□□ -1.9
HMG20A-201ENST00000336216 KRTAP12-1P59990 96 aa3.16□□□□□ -1.9
HMG20A-201ENST00000336216 KRTAP10-10P60014 251 aa3.14□□□□□ -1.91
HMG20A-201ENST00000336216 KRTAP15-1Q3LI76 137 aa3.12□□□□□ -1.91
HMG20A-201ENST00000336216 ABCA13Q86UQ4 5058 aa3.11□□□□□ -1.91
HMG20A-201ENST00000336216 TNP1P09430 55 aa3.09□□□□□ -1.92
HMG20A-201ENST00000336216 LPAP08519 4548 aa3.09□□□□□ -1.92
HMG20A-201ENST00000336216 LRP2P98164 4655 aa3.07□□□□□ -1.92
HMG20A-201ENST00000336216 HERC1Q15751 4861 aa3.02□□□□□ -1.93
HMG20A-201ENST00000336216 HERC2O95714 4834 aa3.01□□□□□ -1.93
HMG20A-201ENST00000336216 LORP23490 312 aaPredicted RBP2.98□□□□□ -1.93
HMG20A-201ENST00000336216 PP632Q6XCG6 107 aa2.96□□□□□ -1.93
HMG20A-201ENST00000336216 PCLOQ9Y6V0 5065 aa2.95□□□□□ -1.94
HMG20A-201ENST00000336216 KRTAP4-1Q9BYQ7 146 aa2.95□□□□□ -1.94
HMG20A-201ENST00000336216 MUC2Q02817 5179 aa2.93□□□□□ -1.94
HMG20A-201ENST00000336216 FSIP2Q5CZC0 6907 aa2.86□□□□□ -1.95
HMG20A-201ENST00000336216 RNF213Q63HN8 5207 aa2.85□□□□□ -1.95
HMG20A-201ENST00000336216 PRO2289Q9P1D8 64 aa2.84□□□□□ -1.96
HMG20A-201ENST00000336216 HMCN2Q8NDA2 5059 aa2.81□□□□□ -1.96
HMG20A-201ENST00000336216 FAT4Q6V0I7 4981 aa2.8□□□□□ -1.96
HMG20A-201ENST00000336216 UBR4Q5T4S7 5183 aa2.77□□□□□ -1.97
HMG20A-201ENST00000336216 KRTAP19-2Q3LHN2 52 aa2.76□□□□□ -1.97
HMG20A-201ENST00000336216 MT1HP80294 61 aa2.71□□□□□ -1.97
HMG20A-201ENST00000336216 INE1O15225 51 aa2.71□□□□□ -1.98
HMG20A-201ENST00000336216 LCE3AQ5TA76 89 aa2.7□□□□□ -1.98
HMG20A-201ENST00000336216 OBSCNQ5VST9 7968 aa2.69□□□□□ -1.98
HMG20A-201ENST00000336216 KRTAP10-12P60413 245 aa2.69□□□□□ -1.98
HMG20A-201ENST00000336216 MT2AP02795 61 aa2.68□□□□□ -1.98
HMG20A-201ENST00000336216 MT1FP04733 61 aa2.68□□□□□ -1.98
HMG20A-201ENST00000336216 CRCT1Q9UGL9 99 aa2.66□□□□□ -1.98
HMG20A-201ENST00000336216 LCE2CQ5TA81 110 aa2.65□□□□□ -1.98
HMG20A-201ENST00000336216 KRTAP12-3P60328 96 aa2.65□□□□□ -1.99
HMG20A-201ENST00000336216 KRTAP23-1A1A580 65 aa2.64□□□□□ -1.99
HMG20A-201ENST00000336216 KRTAP19-1Q8IUB9 90 aa2.59□□□□□ -1.99
HMG20A-201ENST00000336216 SPRR2GQ9BYE4 73 aa2.59□□□□□ -1.99
HMG20A-201ENST00000336216 SYNE1Q8NF91 8797 aaKnown RBP2.56□□□□□ -2
HMG20A-201ENST00000336216 LCE2BO14633 110 aa2.54□□□□□ -2
HMG20A-201ENST00000336216 SPRR5A0A1B0GTR4 108 aa2.53□□□□□ -2
HMG20A-201ENST00000336216 KRTAP9-8Q9BYQ0 159 aa2.53□□□□□ -2
HMG20A-201ENST00000336216 USH2AO75445 5202 aa2.52□□□□□ -2.01
HMG20A-201ENST00000336216 KRTAP10-7P60409 375 aaPredicted RBP2.5□□□□□ -2.01
HMG20A-201ENST00000336216 DSTQ03001 7570 aaKnown RBP2.49□□□□□ -2.01
HMG20A-201ENST00000336216 KRTAP8-1Q8IUC2 63 aa2.48□□□□□ -2.01
HMG20A-201ENST00000336216 KRTAP19-8Q3LI54 63 aa2.48□□□□□ -2.01
HMG20A-201ENST00000336216 LCE2AQ5TA79 106 aaPredicted RBP2.48□□□□□ -2.01
HMG20A-201ENST00000336216 LOC100996750A0A140TA64 210 aa2.47□□□□□ -2.01
HMG20A-201ENST00000336216 KRTAP4-6Q9BYQ5 205 aa2.47□□□□□ -2.01
HMG20A-201ENST00000336216 KRTAP4-8A0A0G2JLE6 195 aa2.47□□□□□ -2.01
HMG20A-201ENST00000336216 KRTAP19-5Q3LI72 72 aa2.47□□□□□ -2.01
HMG20A-201ENST00000336216 KRTAP4-8Q9BYQ9 185 aa2.47□□□□□ -2.01
HMG20A-201ENST00000336216 MT1BP07438 61 aa2.46□□□□□ -2.02
HMG20A-201ENST00000336216 MT1XP80297 61 aa2.45□□□□□ -2.02
HMG20A-201ENST00000336216 KRTAP9-3Q9BYQ3 159 aa2.45□□□□□ -2.02
HMG20A-201ENST00000336216 KRTAP10-5P60370 271 aa2.43□□□□□ -2.02
HMG20A-201ENST00000336216 FCGBPQ9Y6R7 5405 aaPredicted RBP2.41□□□□□ -2.02
HMG20A-201ENST00000336216 KMT2DO14686 5537 aa2.4□□□□□ -2.03
HMG20A-201ENST00000336216 SPRR2FQ96RM1 72 aa2.39□□□□□ -2.03
HMG20A-201ENST00000336216 LCE3CQ5T5A8 94 aa2.34□□□□□ -2.03
HMG20A-201ENST00000336216 KRTAP4-7Q9BYR0 210 aa2.34□□□□□ -2.03
HMG20A-201ENST00000336216 SSPOA2VEC9 5147 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms