RNA–Protein interactions for RNA: ENST00000310546.2

SPSB4-201, Transcript of splA/ryanodine receptor domain and SOCS box containing 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPSB4, Length 2,908 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPSB4-201ENST00000310546 LRP1Q07954 4544 aaKnown RBP9.66□□□□□ -0.86
SPSB4-201ENST00000310546 C9orf92A6NGG3 77 aa9.65□□□□□ -0.87
SPSB4-201ENST00000310546 TPRXLQ17RH7 258 aa9.59□□□□□ -0.87
SPSB4-201ENST00000310546 A0A0D9SG42 100 aa9.59□□□□□ -0.87
SPSB4-201ENST00000310546 NDUFAF8A1L188 74 aa9.58□□□□□ -0.88
SPSB4-201ENST00000310546 MYCBP2O75592 4640 aa9.57□□□□□ -0.88
SPSB4-201ENST00000310546 RPL37P61927 97 aaKnown RBP9.56□□□□□ -0.88
SPSB4-201ENST00000310546 C10orf95Q9H7T3 257 aa9.55□□□□□ -0.88
SPSB4-201ENST00000310546 HSPG2P98160 4391 aa9.54□□□□□ -0.88
SPSB4-201ENST00000310546 KRTAP17-1Q9BYP8 105 aa9.52□□□□□ -0.89
SPSB4-201ENST00000310546 C20orf166-AS1Q96NR2 134 aa9.47□□□□□ -0.89
SPSB4-201ENST00000310546 KRTAP10-4P60372 401 aaPredicted RBP9.46□□□□□ -0.9
SPSB4-201ENST00000310546 KRTAP13-4Q3LI77 160 aa9.46□□□□□ -0.9
SPSB4-201ENST00000310546 RYR1P21817 5038 aa9.44□□□□□ -0.9
SPSB4-201ENST00000310546 KRTAP15-1Q3LI76 137 aa9.42□□□□□ -0.9
SPSB4-201ENST00000310546 Q5VSD8 79 aa9.42□□□□□ -0.9
SPSB4-201ENST00000310546 PKHD1L1Q86WI1 4243 aa9.41□□□□□ -0.9
SPSB4-201ENST00000310546 KRTAP10-6P60371 365 aaPredicted RBP9.39□□□□□ -0.91
SPSB4-201ENST00000310546 BIRC6Q9NR09 4857 aa9.38□□□□□ -0.91
SPSB4-201ENST00000310546 FAT3Q8TDW7 4589 aa9.34□□□□□ -0.91
SPSB4-201ENST00000310546 RPS29P62273 56 aaKnown RBP9.33□□□□□ -0.92
SPSB4-201ENST00000310546 KRTAP3-3Q9BYR6 98 aa9.26□□□□□ -0.93
SPSB4-201ENST00000310546 KRTAP3-2Q9BYR7 98 aa9.25□□□□□ -0.93
SPSB4-201ENST00000310546 S4R3F8 94 aa9.25□□□□□ -0.93
SPSB4-201ENST00000310546 KRTAP4-5Q9BYR2 181 aa9.23□□□□□ -0.93
SPSB4-201ENST00000310546 TNXBP22105 4242 aa9.23□□□□□ -0.93
SPSB4-201ENST00000310546 KRTAP12-2P59991 146 aa9.21□□□□□ -0.93
SPSB4-201ENST00000310546 HERC2O95714 4834 aa9.19□□□□□ -0.94
SPSB4-201ENST00000310546 ABCA13Q86UQ4 5058 aa9.15□□□□□ -0.94
SPSB4-201ENST00000310546 A0A0A0MQY5 61 aa9.08□□□□□ -0.96
SPSB4-201ENST00000310546 KRTAP10-8P60410 259 aa9.07□□□□□ -0.96
SPSB4-201ENST00000310546 KRTAP12-1P59990 96 aa9.05□□□□□ -0.96
SPSB4-201ENST00000310546 LPAP08519 4548 aa9.03□□□□□ -0.96
SPSB4-201ENST00000310546 XP32Q5T750 250 aa9.01□□□□□ -0.97
SPSB4-201ENST00000310546 MT1HL1P0DM35 61 aa8.99□□□□□ -0.97
SPSB4-201ENST00000310546 LRP2P98164 4655 aa8.98□□□□□ -0.97
SPSB4-201ENST00000310546 PCLOQ9Y6V0 5065 aa8.94□□□□□ -0.98
SPSB4-201ENST00000310546 LUZP6Q538Z0 58 aa8.85□□□□□ -0.99
SPSB4-201ENST00000310546 HERC1Q15751 4861 aa8.82□□□□□ -1
SPSB4-201ENST00000310546 J3QL48 77 aa8.8□□□□□ -1
SPSB4-201ENST00000310546 MUC2Q02817 5179 aa8.78□□□□□ -1
SPSB4-201ENST00000310546 M0QZ58 72 aa8.77□□□□□ -1
SPSB4-201ENST00000310546 PLAC4Q8WY50 150 aa8.77□□□□□ -1
SPSB4-201ENST00000310546 R4GN34 69 aa8.57□□□□□ -1.04
SPSB4-201ENST00000310546 RNF213Q63HN8 5207 aa8.45□□□□□ -1.06
SPSB4-201ENST00000310546 HMCN2Q8NDA2 5059 aa8.43□□□□□ -1.06
SPSB4-201ENST00000310546 UBR4Q5T4S7 5183 aa8.37□□□□□ -1.07
SPSB4-201ENST00000310546 KRTAP4-1Q9BYQ7 146 aa8.36□□□□□ -1.07
SPSB4-201ENST00000310546 LORP23490 312 aaPredicted RBP8.34□□□□□ -1.07
SPSB4-201ENST00000310546 FAT4Q6V0I7 4981 aa8.32□□□□□ -1.08
SPSB4-201ENST00000310546 PP632Q6XCG6 107 aa8.27□□□□□ -1.09
SPSB4-201ENST00000310546 MUC17Q685J3 4493 aa8.27□□□□□ -1.09
SPSB4-201ENST00000310546 CAMK2N1Q7Z7J9 78 aa8.25□□□□□ -1.09
SPSB4-201ENST00000310546 SEC61BP60468 96 aaKnown RBP8.23□□□□□ -1.09
SPSB4-201ENST00000310546 KRTAP19-2Q3LHN2 52 aa7.96□□□□□ -1.13
SPSB4-201ENST00000310546 TNP1P09430 55 aa7.92□□□□□ -1.14
SPSB4-201ENST00000310546 SPRR5A0A1B0GTR4 108 aa7.91□□□□□ -1.14
SPSB4-201ENST00000310546 FLGP20930 4061 aaPredicted RBP7.86□□□□□ -1.15
SPSB4-201ENST00000310546 M0R2T5 61 aa7.81□□□□□ -1.16
SPSB4-201ENST00000310546 LCE2CQ5TA81 110 aa7.73□□□□□ -1.17
SPSB4-201ENST00000310546 KRTAP23-1A1A580 65 aa7.72□□□□□ -1.17
SPSB4-201ENST00000310546 PRO2289Q9P1D8 64 aa7.71□□□□□ -1.18
SPSB4-201ENST00000310546 MT1HP80294 61 aa7.58□□□□□ -1.2
SPSB4-201ENST00000310546 INE1O15225 51 aa7.47□□□□□ -1.21
SPSB4-201ENST00000310546 LCE3AQ5TA76 89 aa7.45□□□□□ -1.22
SPSB4-201ENST00000310546 KRTAP10-10P60014 251 aa7.43□□□□□ -1.22
SPSB4-201ENST00000310546 LCE2AQ5TA79 106 aaPredicted RBP7.43□□□□□ -1.22
SPSB4-201ENST00000310546 USH2AO75445 5202 aa7.37□□□□□ -1.23
SPSB4-201ENST00000310546 MT1FP04733 61 aa7.36□□□□□ -1.23
SPSB4-201ENST00000310546 FSIP2Q5CZC0 6907 aa7.33□□□□□ -1.24
SPSB4-201ENST00000310546 MT2AP02795 61 aa7.33□□□□□ -1.24
SPSB4-201ENST00000310546 KRTAP9-8Q9BYQ0 159 aa7.31□□□□□ -1.24
SPSB4-201ENST00000310546 KRTAP19-1Q8IUB9 90 aa7.24□□□□□ -1.25
SPSB4-201ENST00000310546 SPRR2GQ9BYE4 73 aa7.22□□□□□ -1.25
SPSB4-201ENST00000310546 KRTAP8-1Q8IUC2 63 aa7.15□□□□□ -1.27
SPSB4-201ENST00000310546 KRTAP12-3P60328 96 aa7.05□□□□□ -1.28
SPSB4-201ENST00000310546 KRTAP9-3Q9BYQ3 159 aa7□□□□□ -1.29
SPSB4-201ENST00000310546 KRTAP10-12P60413 245 aa6.98□□□□□ -1.29
SPSB4-201ENST00000310546 KRTAP19-8Q3LI54 63 aa6.94□□□□□ -1.3
SPSB4-201ENST00000310546 KMT2DO14686 5537 aa6.93□□□□□ -1.3
SPSB4-201ENST00000310546 MT1BP07438 61 aa6.93□□□□□ -1.3
SPSB4-201ENST00000310546 LCE2BO14633 110 aa6.91□□□□□ -1.3
SPSB4-201ENST00000310546 KRTAP10-5P60370 271 aa6.86□□□□□ -1.31
SPSB4-201ENST00000310546 LCE2DQ5TA82 110 aaPredicted RBP6.83□□□□□ -1.32
SPSB4-201ENST00000310546 MT1XP80297 61 aa6.83□□□□□ -1.32
SPSB4-201ENST00000310546 KRTAP10-7P60409 375 aaPredicted RBP6.77□□□□□ -1.33
SPSB4-201ENST00000310546 KRTAP9-2Q9BYQ4 174 aa6.77□□□□□ -1.33
SPSB4-201ENST00000310546 SSPOA2VEC9 5147 aa6.72□□□□□ -1.33
SPSB4-201ENST00000310546 LCE3CQ5T5A8 94 aa6.64□□□□□ -1.35
SPSB4-201ENST00000310546 KRTAP19-5Q3LI72 72 aa6.57□□□□□ -1.36
SPSB4-201ENST00000310546 KRTAP9-6A8MVA2 160 aa6.52□□□□□ -1.37
SPSB4-201ENST00000310546 KRTAP4-8A0A0G2JLE6 195 aa6.5□□□□□ -1.37
SPSB4-201ENST00000310546 KRTAP4-8Q9BYQ9 185 aa6.5□□□□□ -1.37
SPSB4-201ENST00000310546 CRCT1Q9UGL9 99 aa6.46□□□□□ -1.38
SPSB4-201ENST00000310546 KRTAP19-6Q3LI70 58 aa6.43□□□□□ -1.38
SPSB4-201ENST00000310546 KRTAP4-7Q9BYR0 210 aa6.39□□□□□ -1.39
SPSB4-201ENST00000310546 KRTAP2-3P0C7H8 128 aa6.39□□□□□ -1.39
SPSB4-201ENST00000310546 KRTAP2-4Q9BYR9 128 aa6.39□□□□□ -1.39
SPSB4-201ENST00000310546 KRTAP2-1Q9BYU5 128 aa6.39□□□□□ -1.39
SPSB4-201ENST00000310546 FCGBPQ9Y6R7 5405 aaPredicted RBP6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms