RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 KRTAP3-2Q9BYR7 98 aa3.67□□□□□ -1.82
VPS41-202ENST00000310301 ANK2Q01484 3957 aa3.67□□□□□ -1.82
VPS41-202ENST00000310301 SVEP1Q4LDE5 3571 aa3.66□□□□□ -1.82
VPS41-202ENST00000310301 KRTAP3-3Q9BYR6 98 aa3.64□□□□□ -1.83
VPS41-202ENST00000310301 ZNF469Q96JG9 3925 aaPredicted RBP3.63□□□□□ -1.83
VPS41-202ENST00000310301 KRTAP17-1Q9BYP8 105 aa3.63□□□□□ -1.83
VPS41-202ENST00000310301 DYNC1H1Q14204 4646 aaKnown RBP3.63□□□□□ -1.83
VPS41-202ENST00000310301 CRCT1Q9UGL9 99 aa3.61□□□□□ -1.83
VPS41-202ENST00000310301 KRTAP10-12P60413 245 aa3.6□□□□□ -1.83
VPS41-202ENST00000310301 VPS13DQ5THJ4 4388 aa3.6□□□□□ -1.83
VPS41-202ENST00000310301 DYNC2H1Q8NCM8 4307 aaKnown RBP3.59□□□□□ -1.83
VPS41-202ENST00000310301 RYR1P21817 5038 aa3.57□□□□□ -1.84
VPS41-202ENST00000310301 PRKDCP78527 4128 aaKnown RBP3.56□□□□□ -1.84
VPS41-202ENST00000310301 MT1HP80294 61 aa3.56□□□□□ -1.84
VPS41-202ENST00000310301 KRTAP12-3P60328 96 aa3.54□□□□□ -1.84
VPS41-202ENST00000310301 KIAA1109Q2LD37 5005 aa3.53□□□□□ -1.84
VPS41-202ENST00000310301 LCE3AQ5TA76 89 aa3.52□□□□□ -1.85
VPS41-202ENST00000310301 RYR3Q15413 4870 aa3.52□□□□□ -1.85
VPS41-202ENST00000310301 RYR2Q92736 4967 aa3.52□□□□□ -1.85
VPS41-202ENST00000310301 KRTAP23-1A1A580 65 aa3.52□□□□□ -1.85
VPS41-202ENST00000310301 LRP1BQ9NZR2 4599 aa3.51□□□□□ -1.85
VPS41-202ENST00000310301 STARD9Q9P2P6 4700 aa3.5□□□□□ -1.85
VPS41-202ENST00000310301 FAT2Q9NYQ8 4349 aa3.5□□□□□ -1.85
VPS41-202ENST00000310301 DNAH17Q9UFH2 4485 aa3.49□□□□□ -1.85
VPS41-202ENST00000310301 KRTAP4-1Q9BYQ7 146 aa3.48□□□□□ -1.85
VPS41-202ENST00000310301 VPS13CQ709C8 3753 aa3.46□□□□□ -1.86
VPS41-202ENST00000310301 DNAH6Q9C0G6 4158 aa3.44□□□□□ -1.86
VPS41-202ENST00000310301 HERC2O95714 4834 aa3.43□□□□□ -1.86
VPS41-202ENST00000310301 MT2AP02795 61 aa3.42□□□□□ -1.86
VPS41-202ENST00000310301 KRTAP10-5P60370 271 aa3.42□□□□□ -1.86
VPS41-202ENST00000310301 LORP23490 312 aaPredicted RBP3.42□□□□□ -1.86
VPS41-202ENST00000310301 DNAH2Q9P225 4427 aa3.41□□□□□ -1.86
VPS41-202ENST00000310301 FAT1Q14517 4588 aa3.4□□□□□ -1.87
VPS41-202ENST00000310301 KRTAP8-1Q8IUC2 63 aa3.4□□□□□ -1.87
VPS41-202ENST00000310301 SACSQ9NZJ4 4579 aa3.39□□□□□ -1.87
VPS41-202ENST00000310301 DNAH3Q8TD57 4116 aa3.39□□□□□ -1.87
VPS41-202ENST00000310301 PCLOQ9Y6V0 5065 aa3.38□□□□□ -1.87
VPS41-202ENST00000310301 DNAH8Q96JB1 4490 aa3.35□□□□□ -1.87
VPS41-202ENST00000310301 HERC1Q15751 4861 aa3.34□□□□□ -1.87
VPS41-202ENST00000310301 MT1FP04733 61 aa3.32□□□□□ -1.88
VPS41-202ENST00000310301 SPRR2GQ9BYE4 73 aa3.29□□□□□ -1.88
VPS41-202ENST00000310301 APOBP04114 4563 aaKnown RBP3.28□□□□□ -1.88
VPS41-202ENST00000310301 KRTAP9-2Q9BYQ4 174 aa3.26□□□□□ -1.89
VPS41-202ENST00000310301 FAT3Q8TDW7 4589 aa3.26□□□□□ -1.89
VPS41-202ENST00000310301 CMYA5Q8N3K9 4069 aa3.25□□□□□ -1.89
VPS41-202ENST00000310301 KRTAP9-6A0A140TA67 174 aa3.22□□□□□ -1.89
VPS41-202ENST00000310301 SPRR2FQ96RM1 72 aa3.22□□□□□ -1.89
VPS41-202ENST00000310301 PKHD1L1Q86WI1 4243 aa3.22□□□□□ -1.89
VPS41-202ENST00000310301 DNAH7Q8WXX0 4024 aa3.22□□□□□ -1.89
VPS41-202ENST00000310301 KMT2AQ03164 3969 aa3.22□□□□□ -1.89
VPS41-202ENST00000310301 LCE2DQ5TA82 110 aaPredicted RBP3.22□□□□□ -1.89
VPS41-202ENST00000310301 HSPG2P98160 4391 aa3.21□□□□□ -1.9
VPS41-202ENST00000310301 HYDINQ4G0P3 5121 aa3.2□□□□□ -1.9
VPS41-202ENST00000310301 KMT2CQ8NEZ4 4911 aaKnown RBP3.2□□□□□ -1.9
VPS41-202ENST00000310301 ABCA13Q86UQ4 5058 aa3.19□□□□□ -1.9
VPS41-202ENST00000310301 LCE2CQ5TA81 110 aa3.17□□□□□ -1.9
VPS41-202ENST00000310301 VPS13BQ7Z7G8 4022 aa3.16□□□□□ -1.9
VPS41-202ENST00000310301 KRTAP19-8Q3LI54 63 aa3.16□□□□□ -1.9
VPS41-202ENST00000310301 EPPK1P58107 5090 aaKnown RBP3.16□□□□□ -1.9
VPS41-202ENST00000310301 MYCBP2O75592 4640 aa3.15□□□□□ -1.9
VPS41-202ENST00000310301 KRTAP9-8Q9BYQ0 159 aa3.15□□□□□ -1.91
VPS41-202ENST00000310301 KRTAP19-1Q8IUB9 90 aa3.14□□□□□ -1.91
VPS41-202ENST00000310301 CSMD3Q7Z407 3707 aa3.13□□□□□ -1.91
VPS41-202ENST00000310301 SPRR2EP22531 72 aa3.12□□□□□ -1.91
VPS41-202ENST00000310301 SPRR2BP35325 72 aa3.12□□□□□ -1.91
VPS41-202ENST00000310301 SPRR2AP35326 72 aa3.12□□□□□ -1.91
VPS41-202ENST00000310301 LCE2AQ5TA79 106 aaPredicted RBP3.12□□□□□ -1.91
VPS41-202ENST00000310301 LYSTQ99698 3801 aa3.11□□□□□ -1.91
VPS41-202ENST00000310301 PKD1P98161 4303 aa3.1□□□□□ -1.91
VPS41-202ENST00000310301 LCE3CQ5T5A8 94 aa3.1□□□□□ -1.91
VPS41-202ENST00000310301 KRTAP9-3Q9BYQ3 159 aa3.1□□□□□ -1.91
VPS41-202ENST00000310301 LRP1Q07954 4544 aaKnown RBP3.1□□□□□ -1.91
VPS41-202ENST00000310301 KRTAP10-7P60409 375 aaPredicted RBP3.09□□□□□ -1.91
VPS41-202ENST00000310301 KRTAP19-5Q3LI72 72 aa3.08□□□□□ -1.92
VPS41-202ENST00000310301 KRTAP19-4Q3LI73 84 aa3.08□□□□□ -1.92
VPS41-202ENST00000310301 FRAS1Q86XX4 4008 aa3.06□□□□□ -1.92
VPS41-202ENST00000310301 SPRR2DP22532 72 aa3.04□□□□□ -1.92
VPS41-202ENST00000310301 KRTAP19-2Q3LHN2 52 aa3.02□□□□□ -1.93
VPS41-202ENST00000310301 KRTAP19-6Q3LI70 58 aa3.01□□□□□ -1.93
VPS41-202ENST00000310301 LRP2P98164 4655 aa3.01□□□□□ -1.93
VPS41-202ENST00000310301 HECTD4Q9Y4D8 3996 aa3□□□□□ -1.93
VPS41-202ENST00000310301 MT1BP07438 61 aa3□□□□□ -1.93
VPS41-202ENST00000310301 LCE2BO14633 110 aa2.99□□□□□ -1.93
VPS41-202ENST00000310301 RNF213Q63HN8 5207 aa2.97□□□□□ -1.93
VPS41-202ENST00000310301 PKHD1P08F94 4074 aa2.97□□□□□ -1.93
VPS41-202ENST00000310301 UBR4Q5T4S7 5183 aa2.96□□□□□ -1.94
VPS41-202ENST00000310301 KRTAP9-7A8MTY7 169 aa2.95□□□□□ -1.94
VPS41-202ENST00000310301 KRTAP12-4P60329 112 aa2.93□□□□□ -1.94
VPS41-202ENST00000310301 MT1XP80297 61 aa2.92□□□□□ -1.94
VPS41-202ENST00000310301 LCE3BQ5TA77 95 aa2.9□□□□□ -1.94
VPS41-202ENST00000310301 HMCN2Q8NDA2 5059 aa2.89□□□□□ -1.95
VPS41-202ENST00000310301 MT1GP13640 62 aa2.88□□□□□ -1.95
VPS41-202ENST00000310301 KRTAP6-3Q3LI67 103 aa2.88□□□□□ -1.95
VPS41-202ENST00000310301 MUC17Q685J3 4493 aa2.87□□□□□ -1.95
VPS41-202ENST00000310301 SPRR5A0A1B0GTR4 108 aa2.86□□□□□ -1.95
VPS41-202ENST00000310301 KRTAP20-1Q3LI63 56 aa2.86□□□□□ -1.95
VPS41-202ENST00000310301 FAT4Q6V0I7 4981 aa2.86□□□□□ -1.95
VPS41-202ENST00000310301 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.85□□□□□ -1.95
VPS41-202ENST00000310301 TNXBP22105 4242 aa2.82□□□□□ -1.96
VPS41-202ENST00000310301 LPAP08519 4548 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 178.1 ms