RNA–Protein interactions for RNA: ENST00000304743.6

PCNX1-201, Transcript of pecanex 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCNX1, Length 12,919 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX1-201ENST00000304743 DNAH11Q96DT5 4516 aa3.62□□□□□ -1.83
PCNX1-201ENST00000304743 CSMD1Q96PZ7 3565 aa3.61□□□□□ -1.83
PCNX1-201ENST00000304743 ASPMQ8IZT6 3477 aa3.59□□□□□ -1.83
PCNX1-201ENST00000304743 KMT2AQ03164 3969 aa3.59□□□□□ -1.84
PCNX1-201ENST00000304743 HUWE1Q7Z6Z7 4374 aaKnown RBP3.57□□□□□ -1.84
PCNX1-201ENST00000304743 SVEP1Q4LDE5 3571 aa3.54□□□□□ -1.84
PCNX1-201ENST00000304743 HYDINQ4G0P3 5121 aa3.54□□□□□ -1.84
PCNX1-201ENST00000304743 PCLOQ9Y6V0 5065 aa3.52□□□□□ -1.85
PCNX1-201ENST00000304743 PLECQ15149 4684 aaKnown RBP3.51□□□□□ -1.85
PCNX1-201ENST00000304743 CUBNO60494 3623 aa3.5□□□□□ -1.85
PCNX1-201ENST00000304743 DNAH6Q9C0G6 4158 aa3.48□□□□□ -1.85
PCNX1-201ENST00000304743 DNHD1Q96M86 4753 aa3.48□□□□□ -1.85
PCNX1-201ENST00000304743 LCE3AQ5TA76 89 aa3.45□□□□□ -1.86
PCNX1-201ENST00000304743 DYNC1H1Q14204 4646 aaKnown RBP3.45□□□□□ -1.86
PCNX1-201ENST00000304743 FRAS1Q86XX4 4008 aa3.44□□□□□ -1.86
PCNX1-201ENST00000304743 DNAH17Q9UFH2 4485 aa3.43□□□□□ -1.86
PCNX1-201ENST00000304743 RELNP78509 3460 aa3.43□□□□□ -1.86
PCNX1-201ENST00000304743 KRTAP23-1A1A580 65 aa3.42□□□□□ -1.86
PCNX1-201ENST00000304743 PRKDCP78527 4128 aaKnown RBP3.42□□□□□ -1.86
PCNX1-201ENST00000304743 SPRR2FQ96RM1 72 aa3.4□□□□□ -1.86
PCNX1-201ENST00000304743 RYR1P21817 5038 aa3.4□□□□□ -1.87
PCNX1-201ENST00000304743 KRTAP10-4P60372 401 aaPredicted RBP3.36□□□□□ -1.87
PCNX1-201ENST00000304743 KRTAP3-1Q9BYR8 98 aa3.36□□□□□ -1.87
PCNX1-201ENST00000304743 VPS13BQ7Z7G8 4022 aa3.35□□□□□ -1.87
PCNX1-201ENST00000304743 FLGP20930 4061 aaPredicted RBP3.35□□□□□ -1.87
PCNX1-201ENST00000304743 ANK3Q12955 4377 aaKnown RBP3.34□□□□□ -1.87
PCNX1-201ENST00000304743 MYCBP2O75592 4640 aa3.27□□□□□ -1.89
PCNX1-201ENST00000304743 CSMD2Q7Z408 3487 aa3.26□□□□□ -1.89
PCNX1-201ENST00000304743 SPRR2EP22531 72 aa3.24□□□□□ -1.89
PCNX1-201ENST00000304743 SPRR2BP35325 72 aa3.24□□□□□ -1.89
PCNX1-201ENST00000304743 SPRR2AP35326 72 aa3.24□□□□□ -1.89
PCNX1-201ENST00000304743 MUC3AQ02505 3323 aa3.24□□□□□ -1.89
PCNX1-201ENST00000304743 DNAH5Q8TE73 4624 aa3.23□□□□□ -1.89
PCNX1-201ENST00000304743 DNAH8Q96JB1 4490 aa3.23□□□□□ -1.89
PCNX1-201ENST00000304743 RNF213Q63HN8 5207 aa3.23□□□□□ -1.89
PCNX1-201ENST00000304743 KRTAP12-4P60329 112 aa3.22□□□□□ -1.89
PCNX1-201ENST00000304743 ABCA13Q86UQ4 5058 aa3.22□□□□□ -1.89
PCNX1-201ENST00000304743 PKHD1P08F94 4074 aa3.21□□□□□ -1.9
PCNX1-201ENST00000304743 FAT1Q14517 4588 aa3.2□□□□□ -1.9
PCNX1-201ENST00000304743 RYR3Q15413 4870 aa3.2□□□□□ -1.9
PCNX1-201ENST00000304743 KRTAP4-5Q9BYR2 181 aa3.2□□□□□ -1.9
PCNX1-201ENST00000304743 EPPK1P58107 5090 aaKnown RBP3.2□□□□□ -1.9
PCNX1-201ENST00000304743 KRTAP3-2Q9BYR7 98 aa3.19□□□□□ -1.9
PCNX1-201ENST00000304743 MT1HL1P0DM35 61 aa3.19□□□□□ -1.9
PCNX1-201ENST00000304743 APOBP04114 4563 aaKnown RBP3.18□□□□□ -1.9
PCNX1-201ENST00000304743 DNAH9Q9NYC9 4486 aa3.18□□□□□ -1.9
PCNX1-201ENST00000304743 FAT3Q8TDW7 4589 aa3.18□□□□□ -1.9
PCNX1-201ENST00000304743 DYNC2H1Q8NCM8 4307 aaKnown RBP3.16□□□□□ -1.9
PCNX1-201ENST00000304743 UBR4Q5T4S7 5183 aa3.16□□□□□ -1.9
PCNX1-201ENST00000304743 RYR2Q92736 4967 aa3.16□□□□□ -1.9
PCNX1-201ENST00000304743 SPRR2DP22532 72 aa3.15□□□□□ -1.91
PCNX1-201ENST00000304743 STARD9Q9P2P6 4700 aa3.14□□□□□ -1.91
PCNX1-201ENST00000304743 SACSQ9NZJ4 4579 aa3.14□□□□□ -1.91
PCNX1-201ENST00000304743 PKD1P98161 4303 aa3.12□□□□□ -1.91
PCNX1-201ENST00000304743 LCE2BO14633 110 aa3.11□□□□□ -1.91
PCNX1-201ENST00000304743 SPRR5A0A1B0GTR4 108 aa3.1□□□□□ -1.91
PCNX1-201ENST00000304743 KRTAP3-3Q9BYR6 98 aa3.1□□□□□ -1.91
PCNX1-201ENST00000304743 LCE3BQ5TA77 95 aa3.09□□□□□ -1.91
PCNX1-201ENST00000304743 PKHD1L1Q86WI1 4243 aa3.08□□□□□ -1.92
PCNX1-201ENST00000304743 LCE3CQ5T5A8 94 aa3.08□□□□□ -1.92
PCNX1-201ENST00000304743 LRP1BQ9NZR2 4599 aa3.08□□□□□ -1.92
PCNX1-201ENST00000304743 LRP1Q07954 4544 aaKnown RBP3.08□□□□□ -1.92
PCNX1-201ENST00000304743 KRTAP19-4Q3LI73 84 aa3.06□□□□□ -1.92
PCNX1-201ENST00000304743 KRTAP19-5Q3LI72 72 aa3.04□□□□□ -1.92
PCNX1-201ENST00000304743 LCE2CQ5TA81 110 aa3.03□□□□□ -1.92
PCNX1-201ENST00000304743 MUC12Q9UKN1 5478 aa3□□□□□ -1.93
PCNX1-201ENST00000304743 BIRC6Q9NR09 4857 aa2.99□□□□□ -1.93
PCNX1-201ENST00000304743 MT1HP80294 61 aa2.98□□□□□ -1.93
PCNX1-201ENST00000304743 LCE2DQ5TA82 110 aaPredicted RBP2.97□□□□□ -1.93
PCNX1-201ENST00000304743 LCE3EQ5T5B0 92 aa2.95□□□□□ -1.94
PCNX1-201ENST00000304743 HSPG2P98160 4391 aa2.94□□□□□ -1.94
PCNX1-201ENST00000304743 MT3P25713 68 aa2.93□□□□□ -1.94
PCNX1-201ENST00000304743 LCE3DQ9BYE3 92 aa2.93□□□□□ -1.94
PCNX1-201ENST00000304743 FAT2Q9NYQ8 4349 aa2.93□□□□□ -1.94
PCNX1-201ENST00000304743 TNXBP22105 4242 aa2.92□□□□□ -1.94
PCNX1-201ENST00000304743 KIAA1109Q2LD37 5005 aa2.91□□□□□ -1.94
PCNX1-201ENST00000304743 HMCN2Q8NDA2 5059 aa2.91□□□□□ -1.94
PCNX1-201ENST00000304743 HERC2O95714 4834 aa2.9□□□□□ -1.94
PCNX1-201ENST00000304743 LRP2P98164 4655 aa2.9□□□□□ -1.95
PCNX1-201ENST00000304743 SPRR2GQ9BYE4 73 aa2.88□□□□□ -1.95
PCNX1-201ENST00000304743 MT1GP13640 62 aa2.87□□□□□ -1.95
PCNX1-201ENST00000304743 USH2AO75445 5202 aa2.86□□□□□ -1.95
PCNX1-201ENST00000304743 MT2AP02795 61 aa2.86□□□□□ -1.95
PCNX1-201ENST00000304743 HERC1Q15751 4861 aa2.85□□□□□ -1.95
PCNX1-201ENST00000304743 LCE1BQ5T7P3 118 aa2.82□□□□□ -1.96
PCNX1-201ENST00000304743 MT4P47944 62 aa2.8□□□□□ -1.96
PCNX1-201ENST00000304743 KMT2CQ8NEZ4 4911 aaKnown RBP2.79□□□□□ -1.96
PCNX1-201ENST00000304743 MUC17Q685J3 4493 aa2.79□□□□□ -1.96
PCNX1-201ENST00000304743 LCE1DQ5T752 114 aa2.77□□□□□ -1.97
PCNX1-201ENST00000304743 MT1FP04733 61 aa2.76□□□□□ -1.97
PCNX1-201ENST00000304743 KRTAP4-1Q9BYQ7 146 aa2.75□□□□□ -1.97
PCNX1-201ENST00000304743 FAT4Q6V0I7 4981 aa2.73□□□□□ -1.97
PCNX1-201ENST00000304743 LCE5AQ5TCM9 118 aa2.71□□□□□ -1.98
PCNX1-201ENST00000304743 LPAP08519 4548 aa2.7□□□□□ -1.98
PCNX1-201ENST00000304743 LCE1CQ5T751 118 aa2.63□□□□□ -1.99
PCNX1-201ENST00000304743 LCE1EQ5T753 118 aa2.63□□□□□ -1.99
PCNX1-201ENST00000304743 LCE1FQ5T754 118 aa2.63□□□□□ -1.99
PCNX1-201ENST00000304743 LCE1AQ5T7P2 110 aa2.63□□□□□ -1.99
PCNX1-201ENST00000304743 KRTAP19-1Q8IUB9 90 aa2.61□□□□□ -1.99
PCNX1-201ENST00000304743 KRTAP4-8A0A0G2JLE6 195 aa2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 132.5 ms