RNA–Protein interactions for RNA: ENST00000264039.6

GPC1-201, Transcript of glypican 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC1, Length 3,713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-201ENST00000264039 DNAH2Q9P225 4427 aa8.18□□□□□ -1.1
GPC1-201ENST00000264039 DNAH6Q9C0G6 4158 aa8.15□□□□□ -1.11
GPC1-201ENST00000264039 KRTAP3-2Q9BYR7 98 aa8.15□□□□□ -1.11
GPC1-201ENST00000264039 KRTAP3-3Q9BYR6 98 aa8.14□□□□□ -1.11
GPC1-201ENST00000264039 XP32Q5T750 250 aa8.07□□□□□ -1.12
GPC1-201ENST00000264039 HECTD4Q9Y4D8 3996 aa8.07□□□□□ -1.12
GPC1-201ENST00000264039 VPS13DQ5THJ4 4388 aa8.05□□□□□ -1.12
GPC1-201ENST00000264039 MYCBP2O75592 4640 aa8.05□□□□□ -1.12
GPC1-201ENST00000264039 FAT1Q14517 4588 aa8.04□□□□□ -1.12
GPC1-201ENST00000264039 Q5VSD8 79 aa8.01□□□□□ -1.13
GPC1-201ENST00000264039 VPS13BQ7Z7G8 4022 aa8□□□□□ -1.13
GPC1-201ENST00000264039 DNAH5Q8TE73 4624 aa7.93□□□□□ -1.14
GPC1-201ENST00000264039 DYNC2H1Q8NCM8 4307 aaKnown RBP7.91□□□□□ -1.14
GPC1-201ENST00000264039 HYDINQ4G0P3 5121 aa7.75□□□□□ -1.17
GPC1-201ENST00000264039 DYNC1H1Q14204 4646 aaKnown RBP7.74□□□□□ -1.17
GPC1-201ENST00000264039 APOBP04114 4563 aaKnown RBP7.74□□□□□ -1.17
GPC1-201ENST00000264039 LRP1Q07954 4544 aaKnown RBP7.65□□□□□ -1.18
GPC1-201ENST00000264039 PKHD1P08F94 4074 aa7.65□□□□□ -1.18
GPC1-201ENST00000264039 FAT3Q8TDW7 4589 aa7.65□□□□□ -1.19
GPC1-201ENST00000264039 SACSQ9NZJ4 4579 aa7.64□□□□□ -1.19
GPC1-201ENST00000264039 FAT2Q9NYQ8 4349 aa7.62□□□□□ -1.19
GPC1-201ENST00000264039 KMT2CQ8NEZ4 4911 aaKnown RBP7.61□□□□□ -1.19
GPC1-201ENST00000264039 KRTAP10-4P60372 401 aaPredicted RBP7.61□□□□□ -1.19
GPC1-201ENST00000264039 PP632Q6XCG6 107 aa7.61□□□□□ -1.19
GPC1-201ENST00000264039 TNP1P09430 55 aa7.6□□□□□ -1.19
GPC1-201ENST00000264039 J3QL48 77 aa7.6□□□□□ -1.19
GPC1-201ENST00000264039 LORP23490 312 aaPredicted RBP7.59□□□□□ -1.19
GPC1-201ENST00000264039 A0A1B0GVY2 172 aa7.56□□□□□ -1.2
GPC1-201ENST00000264039 SEC61BP60468 96 aaKnown RBP7.56□□□□□ -1.2
GPC1-201ENST00000264039 RYR2Q92736 4967 aa7.47□□□□□ -1.21
GPC1-201ENST00000264039 PKD1P98161 4303 aa7.45□□□□□ -1.22
GPC1-201ENST00000264039 HSPG2P98160 4391 aa7.45□□□□□ -1.22
GPC1-201ENST00000264039 LRP2P98164 4655 aa7.41□□□□□ -1.22
GPC1-201ENST00000264039 M0R2T5 61 aa7.39□□□□□ -1.23
GPC1-201ENST00000264039 RYR3Q15413 4870 aa7.37□□□□□ -1.23
GPC1-201ENST00000264039 MT1HL1P0DM35 61 aa7.27□□□□□ -1.25
GPC1-201ENST00000264039 KIAA1109Q2LD37 5005 aa7.24□□□□□ -1.25
GPC1-201ENST00000264039 RYR1P21817 5038 aa7.22□□□□□ -1.25
GPC1-201ENST00000264039 LPAP08519 4548 aa7.2□□□□□ -1.26
GPC1-201ENST00000264039 EPPK1P58107 5090 aaKnown RBP7.15□□□□□ -1.26
GPC1-201ENST00000264039 KRTAP17-1Q9BYP8 105 aa7.09□□□□□ -1.28
GPC1-201ENST00000264039 PKHD1L1Q86WI1 4243 aa7.04□□□□□ -1.28
GPC1-201ENST00000264039 KRTAP4-5Q9BYR2 181 aa7.01□□□□□ -1.29
GPC1-201ENST00000264039 KRTAP4-1Q9BYQ7 146 aa7□□□□□ -1.29
GPC1-201ENST00000264039 PRO2289Q9P1D8 64 aa6.98□□□□□ -1.29
GPC1-201ENST00000264039 LCE3AQ5TA76 89 aa6.89□□□□□ -1.31
GPC1-201ENST00000264039 KRTAP10-10P60014 251 aa6.87□□□□□ -1.31
GPC1-201ENST00000264039 TNXBP22105 4242 aa6.83□□□□□ -1.32
GPC1-201ENST00000264039 HERC2O95714 4834 aa6.81□□□□□ -1.32
GPC1-201ENST00000264039 MUC2Q02817 5179 aa6.8□□□□□ -1.32
GPC1-201ENST00000264039 BIRC6Q9NR09 4857 aa6.78□□□□□ -1.32
GPC1-201ENST00000264039 ABCA13Q86UQ4 5058 aa6.77□□□□□ -1.33
GPC1-201ENST00000264039 INE1O15225 51 aa6.76□□□□□ -1.33
GPC1-201ENST00000264039 KRTAP23-1A1A580 65 aa6.65□□□□□ -1.34
GPC1-201ENST00000264039 SPRR5A0A1B0GTR4 108 aa6.64□□□□□ -1.35
GPC1-201ENST00000264039 KRTAP12-3P60328 96 aa6.59□□□□□ -1.35
GPC1-201ENST00000264039 PCLOQ9Y6V0 5065 aa6.54□□□□□ -1.36
GPC1-201ENST00000264039 HERC1Q15751 4861 aa6.51□□□□□ -1.37
GPC1-201ENST00000264039 KRTAP10-12P60413 245 aa6.51□□□□□ -1.37
GPC1-201ENST00000264039 FAT4Q6V0I7 4981 aa6.49□□□□□ -1.37
GPC1-201ENST00000264039 KRTAP19-1Q8IUB9 90 aa6.36□□□□□ -1.39
GPC1-201ENST00000264039 MUC17Q685J3 4493 aa6.35□□□□□ -1.39
GPC1-201ENST00000264039 SPRR2GQ9BYE4 73 aa6.33□□□□□ -1.4
GPC1-201ENST00000264039 KRTAP19-2Q3LHN2 52 aa6.32□□□□□ -1.4
GPC1-201ENST00000264039 KRTAP8-1Q8IUC2 63 aa6.32□□□□□ -1.4
GPC1-201ENST00000264039 HMCN2Q8NDA2 5059 aa6.25□□□□□ -1.41
GPC1-201ENST00000264039 RNF213Q63HN8 5207 aa6.24□□□□□ -1.41
GPC1-201ENST00000264039 MT1FP04733 61 aa6.24□□□□□ -1.41
GPC1-201ENST00000264039 FLGP20930 4061 aaPredicted RBP6.21□□□□□ -1.42
GPC1-201ENST00000264039 MT2AP02795 61 aa6.18□□□□□ -1.42
GPC1-201ENST00000264039 KRTAP10-7P60409 375 aaPredicted RBP6.16□□□□□ -1.42
GPC1-201ENST00000264039 UBR4Q5T4S7 5183 aa6.16□□□□□ -1.42
GPC1-201ENST00000264039 MT1HP80294 61 aa6.11□□□□□ -1.43
GPC1-201ENST00000264039 KRTAP19-5Q3LI72 72 aa6.07□□□□□ -1.44
GPC1-201ENST00000264039 MT1XP80297 61 aa6.05□□□□□ -1.44
GPC1-201ENST00000264039 KRTAP10-5P60370 271 aa6.05□□□□□ -1.44
GPC1-201ENST00000264039 CRCT1Q9UGL9 99 aa6.04□□□□□ -1.44
GPC1-201ENST00000264039 LCE3CQ5T5A8 94 aa6.01□□□□□ -1.45
GPC1-201ENST00000264039 LCE2CQ5TA81 110 aa6□□□□□ -1.45
GPC1-201ENST00000264039 MT1BP07438 61 aa5.95□□□□□ -1.46
GPC1-201ENST00000264039 KMT2DO14686 5537 aa5.93□□□□□ -1.46
GPC1-201ENST00000264039 OBSCNQ5VST9 7968 aa5.9□□□□□ -1.47
GPC1-201ENST00000264039 KRTAP4-7Q9BYR0 210 aa5.88□□□□□ -1.47
GPC1-201ENST00000264039 KRTAP4-8A0A0G2JLE6 195 aa5.88□□□□□ -1.47
GPC1-201ENST00000264039 KRTAP4-8Q9BYQ9 185 aa5.88□□□□□ -1.47
GPC1-201ENST00000264039 KRTAP9-8Q9BYQ0 159 aa5.86□□□□□ -1.47
GPC1-201ENST00000264039 KRTAP19-8Q3LI54 63 aa5.85□□□□□ -1.47
GPC1-201ENST00000264039 USH2AO75445 5202 aa5.82□□□□□ -1.48
GPC1-201ENST00000264039 SYNE1Q8NF91 8797 aaKnown RBP5.79□□□□□ -1.48
GPC1-201ENST00000264039 FSIP2Q5CZC0 6907 aa5.74□□□□□ -1.49
GPC1-201ENST00000264039 KRTAP9-6A8MVA2 160 aa5.68□□□□□ -1.5
GPC1-201ENST00000264039 DSTQ03001 7570 aaKnown RBP5.62□□□□□ -1.51
GPC1-201ENST00000264039 FCGBPQ9Y6R7 5405 aaPredicted RBP5.61□□□□□ -1.51
GPC1-201ENST00000264039 KRTAP12-4P60329 112 aa5.6□□□□□ -1.51
GPC1-201ENST00000264039 KRTAP9-3Q9BYQ3 159 aa5.57□□□□□ -1.52
GPC1-201ENST00000264039 LCE2AQ5TA79 106 aaPredicted RBP5.45□□□□□ -1.54
GPC1-201ENST00000264039 MT1GP13640 62 aa5.45□□□□□ -1.54
GPC1-201ENST00000264039 LOC100996750A0A140TA64 210 aa5.44□□□□□ -1.54
GPC1-201ENST00000264039 LCE2BO14633 110 aa5.43□□□□□ -1.54
GPC1-201ENST00000264039 KRTAP2-3P0C7H8 128 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms