RNA–Protein interactions for RNA: ENST00000261963.11

MCF2L-201, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 2,419 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-201ENST00000261963 RYR3Q15413 4870 aa12.07□□□□□ -0.48
MCF2L-201ENST00000261963 KRTAP3-1Q9BYR8 98 aa12□□□□□ -0.49
MCF2L-201ENST00000261963 RYR1P21817 5038 aa12□□□□□ -0.49
MCF2L-201ENST00000261963 K7ERS5 55 aa11.97□□□□□ -0.49
MCF2L-201ENST00000261963 KRTAP10-8P60410 259 aa11.95□□□□□ -0.5
MCF2L-201ENST00000261963 CRIPTQ9P021 101 aa11.94□□□□□ -0.5
MCF2L-201ENST00000261963 Q5VSD8 79 aa11.91□□□□□ -0.5
MCF2L-201ENST00000261963 MYCBP2O75592 4640 aa11.85□□□□□ -0.51
MCF2L-201ENST00000261963 P0C880 135 aa11.82□□□□□ -0.52
MCF2L-201ENST00000261963 COX6B2Q6YFQ2 88 aa11.82□□□□□ -0.52
MCF2L-201ENST00000261963 KRTAP17-1Q9BYP8 105 aa11.82□□□□□ -0.52
MCF2L-201ENST00000261963 DMBT1Q9UGM3 2413 aaPredicted RBP11.81□□□□□ -0.52
MCF2L-201ENST00000261963 KIAA1109Q2LD37 5005 aa11.78□□□□□ -0.52
MCF2L-201ENST00000261963 RPL37P61927 97 aaKnown RBP11.7□□□□□ -0.54
MCF2L-201ENST00000261963 XP32Q5T750 250 aa11.67□□□□□ -0.54
MCF2L-201ENST00000261963 EPPK1P58107 5090 aaKnown RBP11.66□□□□□ -0.54
MCF2L-201ENST00000261963 MT1HL1P0DM35 61 aa11.62□□□□□ -0.55
MCF2L-201ENST00000261963 SPINT4Q6UDR6 99 aa11.6□□□□□ -0.55
MCF2L-201ENST00000261963 TPRXLQ17RH7 258 aa11.56□□□□□ -0.56
MCF2L-201ENST00000261963 KRTAP10-6P60371 365 aaPredicted RBP11.5□□□□□ -0.57
MCF2L-201ENST00000261963 KRTAP3-3Q9BYR6 98 aa11.5□□□□□ -0.57
MCF2L-201ENST00000261963 A0A0D9SG42 100 aa11.49□□□□□ -0.57
MCF2L-201ENST00000261963 KRTAP13-4Q3LI77 160 aa11.47□□□□□ -0.57
MCF2L-201ENST00000261963 LPAP08519 4548 aa11.4□□□□□ -0.58
MCF2L-201ENST00000261963 C10orf95Q9H7T3 257 aa11.4□□□□□ -0.58
MCF2L-201ENST00000261963 LRP2P98164 4655 aa11.4□□□□□ -0.59
MCF2L-201ENST00000261963 KRTAP15-1Q3LI76 137 aa11.36□□□□□ -0.59
MCF2L-201ENST00000261963 KRTAP3-2Q9BYR7 98 aa11.36□□□□□ -0.59
MCF2L-201ENST00000261963 S4R3F8 94 aa11.35□□□□□ -0.59
MCF2L-201ENST00000261963 NDUFAF8A1L188 74 aa11.34□□□□□ -0.59
MCF2L-201ENST00000261963 ABCA13Q86UQ4 5058 aa11.31□□□□□ -0.6
MCF2L-201ENST00000261963 KRTAP4-5Q9BYR2 181 aa11.21□□□□□ -0.61
MCF2L-201ENST00000261963 KRTAP12-2P59991 146 aa11.17□□□□□ -0.62
MCF2L-201ENST00000261963 BIRC6Q9NR09 4857 aa11.1□□□□□ -0.63
MCF2L-201ENST00000261963 KRTAP12-1P59990 96 aa11.05□□□□□ -0.64
MCF2L-201ENST00000261963 HERC2O95714 4834 aa10.96□□□□□ -0.65
MCF2L-201ENST00000261963 MUC17Q685J3 4493 aa10.94□□□□□ -0.66
MCF2L-201ENST00000261963 M0QZ58 72 aa10.84□□□□□ -0.67
MCF2L-201ENST00000261963 SEC61BP60468 96 aaKnown RBP10.83□□□□□ -0.68
MCF2L-201ENST00000261963 KRTAP4-1Q9BYQ7 146 aa10.78□□□□□ -0.68
MCF2L-201ENST00000261963 J3QL48 77 aa10.76□□□□□ -0.69
MCF2L-201ENST00000261963 PCLOQ9Y6V0 5065 aa10.7□□□□□ -0.7
MCF2L-201ENST00000261963 KRTAP19-2Q3LHN2 52 aa10.6□□□□□ -0.71
MCF2L-201ENST00000261963 PLAC4Q8WY50 150 aa10.59□□□□□ -0.71
MCF2L-201ENST00000261963 MUC2Q02817 5179 aa10.51□□□□□ -0.73
MCF2L-201ENST00000261963 R4GN34 69 aa10.5□□□□□ -0.73
MCF2L-201ENST00000261963 A0A0A0MQY5 61 aa10.5□□□□□ -0.73
MCF2L-201ENST00000261963 LORP23490 312 aaPredicted RBP10.5□□□□□ -0.73
MCF2L-201ENST00000261963 FLGP20930 4061 aaPredicted RBP10.46□□□□□ -0.74
MCF2L-201ENST00000261963 LUZP6Q538Z0 58 aa10.45□□□□□ -0.74
MCF2L-201ENST00000261963 HERC1Q15751 4861 aa10.43□□□□□ -0.74
MCF2L-201ENST00000261963 HMCN2Q8NDA2 5059 aa10.39□□□□□ -0.75
MCF2L-201ENST00000261963 PP632Q6XCG6 107 aa10.21□□□□□ -0.77
MCF2L-201ENST00000261963 FAT4Q6V0I7 4981 aa10.04□□□□□ -0.8
MCF2L-201ENST00000261963 LCE2CQ5TA81 110 aa10.01□□□□□ -0.81
MCF2L-201ENST00000261963 CAMK2N1Q7Z7J9 78 aa10.01□□□□□ -0.81
MCF2L-201ENST00000261963 RNF213Q63HN8 5207 aa9.95□□□□□ -0.82
MCF2L-201ENST00000261963 UBR4Q5T4S7 5183 aa9.9□□□□□ -0.82
MCF2L-201ENST00000261963 SPRR5A0A1B0GTR4 108 aa9.73□□□□□ -0.85
MCF2L-201ENST00000261963 MT1HP80294 61 aa9.72□□□□□ -0.85
MCF2L-201ENST00000261963 TNP1P09430 55 aa9.71□□□□□ -0.86
MCF2L-201ENST00000261963 KRTAP23-1A1A580 65 aa9.7□□□□□ -0.86
MCF2L-201ENST00000261963 SPRR2GQ9BYE4 73 aa9.7□□□□□ -0.86
MCF2L-201ENST00000261963 KRTAP19-1Q8IUB9 90 aa9.67□□□□□ -0.86
MCF2L-201ENST00000261963 M0R2T5 61 aa9.66□□□□□ -0.86
MCF2L-201ENST00000261963 MT2AP02795 61 aa9.54□□□□□ -0.88
MCF2L-201ENST00000261963 MT1FP04733 61 aa9.54□□□□□ -0.88
MCF2L-201ENST00000261963 KRTAP9-8Q9BYQ0 159 aa9.5□□□□□ -0.89
MCF2L-201ENST00000261963 KRTAP10-10P60014 251 aa9.46□□□□□ -0.89
MCF2L-201ENST00000261963 KRTAP19-8Q3LI54 63 aa9.3□□□□□ -0.92
MCF2L-201ENST00000261963 PRO2289Q9P1D8 64 aa9.29□□□□□ -0.92
MCF2L-201ENST00000261963 MT1BP07438 61 aa9.2□□□□□ -0.94
MCF2L-201ENST00000261963 LCE3AQ5TA76 89 aa9.13□□□□□ -0.95
MCF2L-201ENST00000261963 INE1O15225 51 aa9.11□□□□□ -0.95
MCF2L-201ENST00000261963 KRTAP9-3Q9BYQ3 159 aa9.11□□□□□ -0.95
MCF2L-201ENST00000261963 KRTAP10-5P60370 271 aa9.09□□□□□ -0.95
MCF2L-201ENST00000261963 MT1XP80297 61 aa9.09□□□□□ -0.96
MCF2L-201ENST00000261963 KRTAP8-1Q8IUC2 63 aa8.91□□□□□ -0.98
MCF2L-201ENST00000261963 LCE2AQ5TA79 106 aaPredicted RBP8.9□□□□□ -0.98
MCF2L-201ENST00000261963 KRTAP10-12P60413 245 aa8.82□□□□□ -1
MCF2L-201ENST00000261963 KRTAP10-7P60409 375 aaPredicted RBP8.81□□□□□ -1
MCF2L-201ENST00000261963 LCE2BO14633 110 aa8.76□□□□□ -1.01
MCF2L-201ENST00000261963 USH2AO75445 5202 aa8.69□□□□□ -1.02
MCF2L-201ENST00000261963 KRTAP12-3P60328 96 aa8.69□□□□□ -1.02
MCF2L-201ENST00000261963 KMT2DO14686 5537 aa8.47□□□□□ -1.05
MCF2L-201ENST00000261963 KRTAP19-5Q3LI72 72 aa8.41□□□□□ -1.06
MCF2L-201ENST00000261963 KRTAP4-8A0A0G2JLE6 195 aa8.3□□□□□ -1.08
MCF2L-201ENST00000261963 KRTAP4-8Q9BYQ9 185 aa8.3□□□□□ -1.08
MCF2L-201ENST00000261963 SSPOA2VEC9 5147 aa8.18□□□□□ -1.1
MCF2L-201ENST00000261963 LCE3CQ5T5A8 94 aa8.18□□□□□ -1.1
MCF2L-201ENST00000261963 FSIP2Q5CZC0 6907 aa8.15□□□□□ -1.1
MCF2L-201ENST00000261963 KRTAP19-7Q3SYF9 63 aa8.11□□□□□ -1.11
MCF2L-201ENST00000261963 LCE2DQ5TA82 110 aaPredicted RBP8.02□□□□□ -1.13
MCF2L-201ENST00000261963 KRTAP9-6A8MVA2 160 aa7.91□□□□□ -1.14
MCF2L-201ENST00000261963 KRTAP19-6Q3LI70 58 aa7.91□□□□□ -1.14
MCF2L-201ENST00000261963 MT1EP04732 61 aa7.88□□□□□ -1.15
MCF2L-201ENST00000261963 KRTAP2-3P0C7H8 128 aa7.87□□□□□ -1.15
MCF2L-201ENST00000261963 KRTAP4-7Q9BYR0 210 aa7.87□□□□□ -1.15
MCF2L-201ENST00000261963 KRTAP2-4Q9BYR9 128 aa7.87□□□□□ -1.15
MCF2L-201ENST00000261963 KRTAP2-1Q9BYU5 128 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms