RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 BIRC6Q9NR09 4857 aa6.95□□□□□ -1.3
SNX1-201ENST00000261889 FAT3Q8TDW7 4589 aa6.95□□□□□ -1.3
SNX1-201ENST00000261889 A8MUU9 505 aa6.92□□□□□ -1.3
SNX1-201ENST00000261889 KIAA1109Q2LD37 5005 aa6.91□□□□□ -1.3
SNX1-201ENST00000261889 HERC2O95714 4834 aa6.89□□□□□ -1.31
SNX1-201ENST00000261889 H1FX-AS1Q4G0G2 97 aa6.89□□□□□ -1.31
SNX1-201ENST00000261889 LPAP08519 4548 aa6.88□□□□□ -1.31
SNX1-201ENST00000261889 COX6B2Q6YFQ2 88 aa6.87□□□□□ -1.31
SNX1-201ENST00000261889 TNXBP22105 4242 aa6.86□□□□□ -1.31
SNX1-201ENST00000261889 KRTAP25-1Q3LHN0 102 aa6.85□□□□□ -1.31
SNX1-201ENST00000261889 C10orf95Q9H7T3 257 aa6.84□□□□□ -1.31
SNX1-201ENST00000261889 KRTAP13-4Q3LI77 160 aa6.82□□□□□ -1.32
SNX1-201ENST00000261889 KRTAP10-8P60410 259 aa6.78□□□□□ -1.32
SNX1-201ENST00000261889 C20orf166-AS1Q96NR2 134 aa6.78□□□□□ -1.32
SNX1-201ENST00000261889 ROMO1P60602 79 aa6.75□□□□□ -1.33
SNX1-201ENST00000261889 ABCA13Q86UQ4 5058 aa6.72□□□□□ -1.33
SNX1-201ENST00000261889 LRP2P98164 4655 aa6.72□□□□□ -1.33
SNX1-201ENST00000261889 P0C880 135 aa6.72□□□□□ -1.33
SNX1-201ENST00000261889 K7ERS5 55 aa6.71□□□□□ -1.34
SNX1-201ENST00000261889 Q5VSD8 79 aa6.7□□□□□ -1.34
SNX1-201ENST00000261889 KRTAP10-6P60371 365 aaPredicted RBP6.68□□□□□ -1.34
SNX1-201ENST00000261889 KRTAP4-5Q9BYR2 181 aa6.68□□□□□ -1.34
SNX1-201ENST00000261889 SPINT4Q6UDR6 99 aa6.67□□□□□ -1.34
SNX1-201ENST00000261889 TPRXLQ17RH7 258 aa6.66□□□□□ -1.34
SNX1-201ENST00000261889 KRTAP3-3Q9BYR6 98 aa6.66□□□□□ -1.34
SNX1-201ENST00000261889 RPL37P61927 97 aaKnown RBP6.62□□□□□ -1.35
SNX1-201ENST00000261889 KRTAP3-2Q9BYR7 98 aa6.59□□□□□ -1.35
SNX1-201ENST00000261889 KRTAP12-2P59991 146 aa6.58□□□□□ -1.36
SNX1-201ENST00000261889 MT1HL1P0DM35 61 aa6.58□□□□□ -1.36
SNX1-201ENST00000261889 RPS29P62273 56 aaKnown RBP6.57□□□□□ -1.36
SNX1-201ENST00000261889 S4R3F8 94 aa6.57□□□□□ -1.36
SNX1-201ENST00000261889 PCLOQ9Y6V0 5065 aa6.56□□□□□ -1.36
SNX1-201ENST00000261889 XP32Q5T750 250 aa6.53□□□□□ -1.36
SNX1-201ENST00000261889 NDUFAF8A1L188 74 aa6.49□□□□□ -1.37
SNX1-201ENST00000261889 MUC2Q02817 5179 aa6.47□□□□□ -1.37
SNX1-201ENST00000261889 KRTAP12-1P59990 96 aa6.4□□□□□ -1.39
SNX1-201ENST00000261889 HERC1Q15751 4861 aa6.32□□□□□ -1.4
SNX1-201ENST00000261889 HMCN2Q8NDA2 5059 aa6.31□□□□□ -1.4
SNX1-201ENST00000261889 M0QZ58 72 aa6.31□□□□□ -1.4
SNX1-201ENST00000261889 MUC17Q685J3 4493 aa6.3□□□□□ -1.4
SNX1-201ENST00000261889 LORP23490 312 aaPredicted RBP6.28□□□□□ -1.4
SNX1-201ENST00000261889 KRTAP15-1Q3LI76 137 aa6.26□□□□□ -1.41
SNX1-201ENST00000261889 R4GN34 69 aa6.22□□□□□ -1.41
SNX1-201ENST00000261889 J3QL48 77 aa6.17□□□□□ -1.42
SNX1-201ENST00000261889 FAT4Q6V0I7 4981 aa6.12□□□□□ -1.43
SNX1-201ENST00000261889 KRTAP4-1Q9BYQ7 146 aa6.07□□□□□ -1.44
SNX1-201ENST00000261889 CAMK2N1Q7Z7J9 78 aa6□□□□□ -1.45
SNX1-201ENST00000261889 PLAC4Q8WY50 150 aa5.99□□□□□ -1.45
SNX1-201ENST00000261889 RNF213Q63HN8 5207 aa5.94□□□□□ -1.46
SNX1-201ENST00000261889 UBR4Q5T4S7 5183 aa5.92□□□□□ -1.46
SNX1-201ENST00000261889 KRTAP19-2Q3LHN2 52 aa5.87□□□□□ -1.47
SNX1-201ENST00000261889 SEC61BP60468 96 aaKnown RBP5.83□□□□□ -1.48
SNX1-201ENST00000261889 FLGP20930 4061 aaPredicted RBP5.81□□□□□ -1.48
SNX1-201ENST00000261889 LUZP6Q538Z0 58 aa5.75□□□□□ -1.49
SNX1-201ENST00000261889 LCE2CQ5TA81 110 aa5.73□□□□□ -1.49
SNX1-201ENST00000261889 A0A0A0MQY5 61 aa5.59□□□□□ -1.51
SNX1-201ENST00000261889 TNP1P09430 55 aa5.59□□□□□ -1.51
SNX1-201ENST00000261889 M0R2T5 61 aa5.57□□□□□ -1.52
SNX1-201ENST00000261889 LCE2AQ5TA79 106 aaPredicted RBP5.55□□□□□ -1.52
SNX1-201ENST00000261889 MT1HP80294 61 aa5.54□□□□□ -1.52
SNX1-201ENST00000261889 PP632Q6XCG6 107 aa5.52□□□□□ -1.53
SNX1-201ENST00000261889 USH2AO75445 5202 aa5.47□□□□□ -1.53
SNX1-201ENST00000261889 LCE3AQ5TA76 89 aa5.44□□□□□ -1.54
SNX1-201ENST00000261889 KMT2DO14686 5537 aa5.44□□□□□ -1.54
SNX1-201ENST00000261889 KRTAP19-1Q8IUB9 90 aa5.38□□□□□ -1.55
SNX1-201ENST00000261889 KRTAP10-10P60014 251 aa5.37□□□□□ -1.55
SNX1-201ENST00000261889 KRTAP9-8Q9BYQ0 159 aa5.36□□□□□ -1.55
SNX1-201ENST00000261889 MT1FP04733 61 aa5.3□□□□□ -1.56
SNX1-201ENST00000261889 MT2AP02795 61 aa5.26□□□□□ -1.57
SNX1-201ENST00000261889 SPRR5A0A1B0GTR4 108 aa5.24□□□□□ -1.57
SNX1-201ENST00000261889 SPRR2GQ9BYE4 73 aa5.22□□□□□ -1.57
SNX1-201ENST00000261889 FSIP2Q5CZC0 6907 aa5.19□□□□□ -1.58
SNX1-201ENST00000261889 KRTAP9-3Q9BYQ3 159 aa5.17□□□□□ -1.58
SNX1-201ENST00000261889 KRTAP10-7P60409 375 aaPredicted RBP5.13□□□□□ -1.59
SNX1-201ENST00000261889 LCE2DQ5TA82 110 aaPredicted RBP5.1□□□□□ -1.59
SNX1-201ENST00000261889 KRTAP10-5P60370 271 aa5.09□□□□□ -1.59
SNX1-201ENST00000261889 MT1XP80297 61 aa5.09□□□□□ -1.59
SNX1-201ENST00000261889 KRTAP12-3P60328 96 aa5.08□□□□□ -1.6
SNX1-201ENST00000261889 MT1BP07438 61 aa5.07□□□□□ -1.6
SNX1-201ENST00000261889 KRTAP23-1A1A580 65 aa5.05□□□□□ -1.6
SNX1-201ENST00000261889 KRTAP10-12P60413 245 aa5.05□□□□□ -1.6
SNX1-201ENST00000261889 KRTAP19-8Q3LI54 63 aa5.04□□□□□ -1.6
SNX1-201ENST00000261889 LCE2BO14633 110 aa5.03□□□□□ -1.6
SNX1-201ENST00000261889 KRTAP8-1Q8IUC2 63 aa5□□□□□ -1.61
SNX1-201ENST00000261889 KRTAP4-8A0A0G2JLE6 195 aa4.93□□□□□ -1.62
SNX1-201ENST00000261889 KRTAP4-8Q9BYQ9 185 aa4.93□□□□□ -1.62
SNX1-201ENST00000261889 KRTAP19-5Q3LI72 72 aa4.89□□□□□ -1.63
SNX1-201ENST00000261889 KRTAP4-7Q9BYR0 210 aa4.89□□□□□ -1.63
SNX1-201ENST00000261889 SSPOA2VEC9 5147 aa4.88□□□□□ -1.63
SNX1-201ENST00000261889 KRTAP9-2Q9BYQ4 174 aa4.87□□□□□ -1.63
SNX1-201ENST00000261889 PRO2289Q9P1D8 64 aa4.86□□□□□ -1.63
SNX1-201ENST00000261889 DSTQ03001 7570 aaKnown RBP4.84□□□□□ -1.63
SNX1-201ENST00000261889 KRTAP19-6Q3LI70 58 aa4.8□□□□□ -1.64
SNX1-201ENST00000261889 KRTAP9-6A8MVA2 160 aa4.78□□□□□ -1.64
SNX1-201ENST00000261889 FCGBPQ9Y6R7 5405 aaPredicted RBP4.74□□□□□ -1.65
SNX1-201ENST00000261889 LCE3CQ5T5A8 94 aa4.72□□□□□ -1.65
SNX1-201ENST00000261889 MUC12Q9UKN1 5478 aa4.7□□□□□ -1.66
SNX1-201ENST00000261889 OBSCNQ5VST9 7968 aa4.7□□□□□ -1.66
SNX1-201ENST00000261889 INE1O15225 51 aa4.69□□□□□ -1.66
SNX1-201ENST00000261889 CRCT1Q9UGL9 99 aa4.65□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms