RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 PLECQ15149 4684 aaKnown RBP2.06□□□□□ -2.08
VPS13C-202ENST00000261517 VPS13BQ7Z7G8 4022 aa2.06□□□□□ -2.08
VPS13C-202ENST00000261517 KRTAP19-4Q3LI73 84 aa2.05□□□□□ -2.08
VPS13C-202ENST00000261517 HECTD4Q9Y4D8 3996 aa2.05□□□□□ -2.08
VPS13C-202ENST00000261517 PKHD1P08F94 4074 aa2.04□□□□□ -2.08
VPS13C-202ENST00000261517 INE1O15225 51 aa2.02□□□□□ -2.09
VPS13C-202ENST00000261517 KRTAP12-2P59991 146 aa2.02□□□□□ -2.09
VPS13C-202ENST00000261517 MT1HL1P0DM35 61 aa2.02□□□□□ -2.09
VPS13C-202ENST00000261517 KRTAP3-1Q9BYR8 98 aa2.01□□□□□ -2.09
VPS13C-202ENST00000261517 KRTAP10-6P60371 365 aaPredicted RBP2.01□□□□□ -2.09
VPS13C-202ENST00000261517 KRTAP10-4P60372 401 aaPredicted RBP2□□□□□ -2.09
VPS13C-202ENST00000261517 VPS13DQ5THJ4 4388 aa2□□□□□ -2.09
VPS13C-202ENST00000261517 RYR1P21817 5038 aa2□□□□□ -2.09
VPS13C-202ENST00000261517 DNAH6Q9C0G6 4158 aa1.99□□□□□ -2.09
VPS13C-202ENST00000261517 DNAH5Q8TE73 4624 aa1.98□□□□□ -2.09
VPS13C-202ENST00000261517 DNAH10Q8IVF4 4471 aa1.98□□□□□ -2.09
VPS13C-202ENST00000261517 FRAS1Q86XX4 4008 aa1.98□□□□□ -2.09
VPS13C-202ENST00000261517 DNAH11Q96DT5 4516 aa1.98□□□□□ -2.09
VPS13C-202ENST00000261517 KRTAP15-1Q3LI76 137 aa1.95□□□□□ -2.1
VPS13C-202ENST00000261517 DNAH2Q9P225 4427 aa1.95□□□□□ -2.1
VPS13C-202ENST00000261517 KRTAP10-12P60413 245 aa1.94□□□□□ -2.1
VPS13C-202ENST00000261517 KRTAP3-2Q9BYR7 98 aa1.94□□□□□ -2.1
VPS13C-202ENST00000261517 KMT2CQ8NEZ4 4911 aaKnown RBP1.93□□□□□ -2.1
VPS13C-202ENST00000261517 KRTAP3-3Q9BYR6 98 aa1.93□□□□□ -2.1
VPS13C-202ENST00000261517 LRP1BQ9NZR2 4599 aa1.93□□□□□ -2.1
VPS13C-202ENST00000261517 DYNC2H1Q8NCM8 4307 aaKnown RBP1.92□□□□□ -2.1
VPS13C-202ENST00000261517 DNAH17Q9UFH2 4485 aa1.91□□□□□ -2.1
VPS13C-202ENST00000261517 MYCBP2O75592 4640 aa1.91□□□□□ -2.1
VPS13C-202ENST00000261517 FAT2Q9NYQ8 4349 aa1.91□□□□□ -2.1
VPS13C-202ENST00000261517 FAT1Q14517 4588 aa1.9□□□□□ -2.1
VPS13C-202ENST00000261517 RYR3Q15413 4870 aa1.9□□□□□ -2.11
VPS13C-202ENST00000261517 KIAA1109Q2LD37 5005 aa1.89□□□□□ -2.11
VPS13C-202ENST00000261517 FAT3Q8TDW7 4589 aa1.88□□□□□ -2.11
VPS13C-202ENST00000261517 APOBP04114 4563 aaKnown RBP1.88□□□□□ -2.11
VPS13C-202ENST00000261517 DNAH8Q96JB1 4490 aa1.87□□□□□ -2.11
VPS13C-202ENST00000261517 DYNC1H1Q14204 4646 aaKnown RBP1.86□□□□□ -2.11
VPS13C-202ENST00000261517 KRTAP12-3P60328 96 aa1.86□□□□□ -2.11
VPS13C-202ENST00000261517 SACSQ9NZJ4 4579 aa1.85□□□□□ -2.11
VPS13C-202ENST00000261517 SPRR2GQ9BYE4 73 aa1.84□□□□□ -2.11
VPS13C-202ENST00000261517 LRP1Q07954 4544 aaKnown RBP1.83□□□□□ -2.12
VPS13C-202ENST00000261517 HYDINQ4G0P3 5121 aa1.83□□□□□ -2.12
VPS13C-202ENST00000261517 PKD1P98161 4303 aa1.83□□□□□ -2.12
VPS13C-202ENST00000261517 HERC2O95714 4834 aa1.83□□□□□ -2.12
VPS13C-202ENST00000261517 LRP2P98164 4655 aa1.79□□□□□ -2.12
VPS13C-202ENST00000261517 KRTAP4-5Q9BYR2 181 aa1.79□□□□□ -2.12
VPS13C-202ENST00000261517 RYR2Q92736 4967 aa1.79□□□□□ -2.12
VPS13C-202ENST00000261517 HSPG2P98160 4391 aa1.78□□□□□ -2.13
VPS13C-202ENST00000261517 KRTAP8-1Q8IUC2 63 aa1.77□□□□□ -2.13
VPS13C-202ENST00000261517 LCE3AQ5TA76 89 aa1.75□□□□□ -2.13
VPS13C-202ENST00000261517 MT1HP80294 61 aa1.74□□□□□ -2.13
VPS13C-202ENST00000261517 FLGP20930 4061 aaPredicted RBP1.73□□□□□ -2.13
VPS13C-202ENST00000261517 KRTAP19-8Q3LI54 63 aa1.72□□□□□ -2.13
VPS13C-202ENST00000261517 PCLOQ9Y6V0 5065 aa1.7□□□□□ -2.14
VPS13C-202ENST00000261517 MT2AP02795 61 aa1.7□□□□□ -2.14
VPS13C-202ENST00000261517 TNXBP22105 4242 aa1.7□□□□□ -2.14
VPS13C-202ENST00000261517 BIRC6Q9NR09 4857 aa1.68□□□□□ -2.14
VPS13C-202ENST00000261517 PKHD1L1Q86WI1 4243 aa1.68□□□□□ -2.14
VPS13C-202ENST00000261517 KRTAP10-7P60409 375 aaPredicted RBP1.67□□□□□ -2.14
VPS13C-202ENST00000261517 EPPK1P58107 5090 aaKnown RBP1.66□□□□□ -2.14
VPS13C-202ENST00000261517 LCE3CQ5T5A8 94 aa1.66□□□□□ -2.14
VPS13C-202ENST00000261517 HERC1Q15751 4861 aa1.65□□□□□ -2.15
VPS13C-202ENST00000261517 LORP23490 312 aaPredicted RBP1.64□□□□□ -2.15
VPS13C-202ENST00000261517 KRTAP4-1Q9BYQ7 146 aa1.64□□□□□ -2.15
VPS13C-202ENST00000261517 MUC2Q02817 5179 aa1.64□□□□□ -2.15
VPS13C-202ENST00000261517 KRTAP10-5P60370 271 aa1.64□□□□□ -2.15
VPS13C-202ENST00000261517 MT1FP04733 61 aa1.63□□□□□ -2.15
VPS13C-202ENST00000261517 ABCA13Q86UQ4 5058 aa1.62□□□□□ -2.15
VPS13C-202ENST00000261517 KRTAP17-1Q9BYP8 105 aa1.62□□□□□ -2.15
VPS13C-202ENST00000261517 RNF213Q63HN8 5207 aa1.6□□□□□ -2.15
VPS13C-202ENST00000261517 KRTAP19-5Q3LI72 72 aa1.59□□□□□ -2.15
VPS13C-202ENST00000261517 LPAP08519 4548 aa1.58□□□□□ -2.16
VPS13C-202ENST00000261517 KRTAP19-1Q8IUB9 90 aa1.58□□□□□ -2.16
VPS13C-202ENST00000261517 SPRR5A0A1B0GTR4 108 aa1.58□□□□□ -2.16
VPS13C-202ENST00000261517 MT1GP13640 62 aa1.58□□□□□ -2.16
VPS13C-202ENST00000261517 SPRR2FQ96RM1 72 aa1.57□□□□□ -2.16
VPS13C-202ENST00000261517 MUC17Q685J3 4493 aa1.56□□□□□ -2.16
VPS13C-202ENST00000261517 CRCT1Q9UGL9 99 aa1.56□□□□□ -2.16
VPS13C-202ENST00000261517 UBR4Q5T4S7 5183 aa1.56□□□□□ -2.16
VPS13C-202ENST00000261517 LCE2CQ5TA81 110 aa1.55□□□□□ -2.16
VPS13C-202ENST00000261517 MT1XP80297 61 aa1.55□□□□□ -2.16
VPS13C-202ENST00000261517 KRTAP9-8Q9BYQ0 159 aa1.55□□□□□ -2.16
VPS13C-202ENST00000261517 KRTAP12-4P60329 112 aa1.55□□□□□ -2.16
VPS13C-202ENST00000261517 KRTAP19-2Q3LHN2 52 aa1.55□□□□□ -2.16
VPS13C-202ENST00000261517 FSIP2Q5CZC0 6907 aa1.55□□□□□ -2.16
VPS13C-202ENST00000261517 LCE2DQ5TA82 110 aaPredicted RBP1.54□□□□□ -2.16
VPS13C-202ENST00000261517 KRTAP9-3Q9BYQ3 159 aa1.53□□□□□ -2.16
VPS13C-202ENST00000261517 FAT4Q6V0I7 4981 aa1.53□□□□□ -2.17
VPS13C-202ENST00000261517 LCE2BO14633 110 aa1.52□□□□□ -2.17
VPS13C-202ENST00000261517 MT1BP07438 61 aa1.52□□□□□ -2.17
VPS13C-202ENST00000261517 HMCN2Q8NDA2 5059 aa1.51□□□□□ -2.17
VPS13C-202ENST00000261517 MT1LQ93083 61 aa1.51□□□□□ -2.17
VPS13C-202ENST00000261517 SPRR2EP22531 72 aa1.5□□□□□ -2.17
VPS13C-202ENST00000261517 SPRR2BP35325 72 aa1.5□□□□□ -2.17
VPS13C-202ENST00000261517 SPRR2AP35326 72 aa1.5□□□□□ -2.17
VPS13C-202ENST00000261517 LCE2AQ5TA79 106 aaPredicted RBP1.5□□□□□ -2.17
VPS13C-202ENST00000261517 MT1EP04732 61 aa1.48□□□□□ -2.17
VPS13C-202ENST00000261517 SPRR2DP22532 72 aa1.48□□□□□ -2.17
VPS13C-202ENST00000261517 KRTAP19-6Q3LI70 58 aa1.48□□□□□ -2.17
VPS13C-202ENST00000261517 KRTAP19-3Q7Z4W3 81 aa1.47□□□□□ -2.17
VPS13C-202ENST00000261517 SYNE1Q8NF91 8797 aaKnown RBP1.44□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms