RNA–Protein interactions for RNA: ENST00000257290.9

PDGFRA-201, Transcript of platelet derived growth factor receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFRA, Length 6,576 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-201ENST00000257290 DNAH1Q9P2D7 4330 aa2.97□□□□□ -1.93
PDGFRA-201ENST00000257290 PLECQ15149 4684 aaKnown RBP2.97□□□□□ -1.93
PDGFRA-201ENST00000257290 DYNC2H1Q8NCM8 4307 aaKnown RBP2.96□□□□□ -1.94
PDGFRA-201ENST00000257290 DNAH6Q9C0G6 4158 aa2.96□□□□□ -1.94
PDGFRA-201ENST00000257290 FBN3Q75N90 2809 aa2.93□□□□□ -1.94
PDGFRA-201ENST00000257290 DNAH11Q96DT5 4516 aa2.93□□□□□ -1.94
PDGFRA-201ENST00000257290 DNAH2Q9P225 4427 aa2.9□□□□□ -1.94
PDGFRA-201ENST00000257290 KRTAP4-5Q9BYR2 181 aa2.9□□□□□ -1.94
PDGFRA-201ENST00000257290 PKD1L1Q8TDX9 2849 aa2.9□□□□□ -1.95
PDGFRA-201ENST00000257290 DNAH8Q96JB1 4490 aa2.9□□□□□ -1.95
PDGFRA-201ENST00000257290 DNAH5Q8TE73 4624 aa2.89□□□□□ -1.95
PDGFRA-201ENST00000257290 DYNC1H1Q14204 4646 aaKnown RBP2.88□□□□□ -1.95
PDGFRA-201ENST00000257290 STARD9Q9P2P6 4700 aa2.88□□□□□ -1.95
PDGFRA-201ENST00000257290 MEGF8Q7Z7M0 2845 aa2.87□□□□□ -1.95
PDGFRA-201ENST00000257290 DNAH7Q8WXX0 4024 aa2.84□□□□□ -1.95
PDGFRA-201ENST00000257290 SPRR5A0A1B0GTR4 108 aa2.83□□□□□ -1.96
PDGFRA-201ENST00000257290 SACSQ9NZJ4 4579 aa2.83□□□□□ -1.96
PDGFRA-201ENST00000257290 HECTD4Q9Y4D8 3996 aa2.81□□□□□ -1.96
PDGFRA-201ENST00000257290 FAT2Q9NYQ8 4349 aa2.8□□□□□ -1.96
PDGFRA-201ENST00000257290 DNHD1Q96M86 4753 aa2.8□□□□□ -1.96
PDGFRA-201ENST00000257290 PRKDCP78527 4128 aaKnown RBP2.8□□□□□ -1.96
PDGFRA-201ENST00000257290 LRP1BQ9NZR2 4599 aa2.8□□□□□ -1.96
PDGFRA-201ENST00000257290 KRTAP12-3P60328 96 aa2.77□□□□□ -1.97
PDGFRA-201ENST00000257290 LCE3AQ5TA76 89 aa2.75□□□□□ -1.97
PDGFRA-201ENST00000257290 RYR2Q92736 4967 aa2.73□□□□□ -1.97
PDGFRA-201ENST00000257290 CSMD3Q7Z407 3707 aa2.71□□□□□ -1.98
PDGFRA-201ENST00000257290 PKHD1L1Q86WI1 4243 aa2.7□□□□□ -1.98
PDGFRA-201ENST00000257290 APOBP04114 4563 aaKnown RBP2.69□□□□□ -1.98
PDGFRA-201ENST00000257290 KMT2AQ03164 3969 aa2.69□□□□□ -1.98
PDGFRA-201ENST00000257290 KRTAP10-12P60413 245 aa2.68□□□□□ -1.98
PDGFRA-201ENST00000257290 RYR1P21817 5038 aa2.67□□□□□ -1.98
PDGFRA-201ENST00000257290 KRTAP4-1Q9BYQ7 146 aa2.67□□□□□ -1.98
PDGFRA-201ENST00000257290 CRCT1Q9UGL9 99 aa2.66□□□□□ -1.98
PDGFRA-201ENST00000257290 FRAS1Q86XX4 4008 aa2.66□□□□□ -1.98
PDGFRA-201ENST00000257290 FAT1Q14517 4588 aa2.66□□□□□ -1.98
PDGFRA-201ENST00000257290 KRTAP17-1Q9BYP8 105 aa2.64□□□□□ -1.99
PDGFRA-201ENST00000257290 KRTAP10-5P60370 271 aa2.63□□□□□ -1.99
PDGFRA-201ENST00000257290 RYR3Q15413 4870 aa2.63□□□□□ -1.99
PDGFRA-201ENST00000257290 LYSTQ99698 3801 aa2.63□□□□□ -1.99
PDGFRA-201ENST00000257290 COL7A1Q02388 2944 aa2.63□□□□□ -1.99
PDGFRA-201ENST00000257290 HYDINQ4G0P3 5121 aa2.62□□□□□ -1.99
PDGFRA-201ENST00000257290 VPS13BQ7Z7G8 4022 aa2.62□□□□□ -1.99
PDGFRA-201ENST00000257290 HERC1Q15751 4861 aa2.62□□□□□ -1.99
PDGFRA-201ENST00000257290 LORP23490 312 aaPredicted RBP2.61□□□□□ -1.99
PDGFRA-201ENST00000257290 MT1HP80294 61 aa2.61□□□□□ -1.99
PDGFRA-201ENST00000257290 FAT3Q8TDW7 4589 aa2.61□□□□□ -1.99
PDGFRA-201ENST00000257290 HSPG2P98160 4391 aa2.6□□□□□ -1.99
PDGFRA-201ENST00000257290 PKHD1P08F94 4074 aa2.59□□□□□ -1.99
PDGFRA-201ENST00000257290 PKD1P98161 4303 aa2.59□□□□□ -1.99
PDGFRA-201ENST00000257290 BIRC6Q9NR09 4857 aa2.59□□□□□ -2
PDGFRA-201ENST00000257290 MT2AP02795 61 aa2.54□□□□□ -2
PDGFRA-201ENST00000257290 KRTAP8-1Q8IUC2 63 aa2.53□□□□□ -2
PDGFRA-201ENST00000257290 SPRR2GQ9BYE4 73 aa2.53□□□□□ -2
PDGFRA-201ENST00000257290 MYCBP2O75592 4640 aa2.52□□□□□ -2.01
PDGFRA-201ENST00000257290 MT3P25713 68 aa2.51□□□□□ -2.01
PDGFRA-201ENST00000257290 KIAA1109Q2LD37 5005 aa2.51□□□□□ -2.01
PDGFRA-201ENST00000257290 KRTAP12-4P60329 112 aa2.5□□□□□ -2.01
PDGFRA-201ENST00000257290 MUC17Q685J3 4493 aa2.5□□□□□ -2.01
PDGFRA-201ENST00000257290 KRTAP19-4Q3LI73 84 aa2.5□□□□□ -2.01
PDGFRA-201ENST00000257290 MT1FP04733 61 aa2.49□□□□□ -2.01
PDGFRA-201ENST00000257290 TNXBP22105 4242 aa2.48□□□□□ -2.01
PDGFRA-201ENST00000257290 LCE3CQ5T5A8 94 aa2.47□□□□□ -2.01
PDGFRA-201ENST00000257290 LRP1Q07954 4544 aaKnown RBP2.45□□□□□ -2.02
PDGFRA-201ENST00000257290 HERC2O95714 4834 aa2.43□□□□□ -2.02
PDGFRA-201ENST00000257290 KRTAP19-8Q3LI54 63 aa2.41□□□□□ -2.02
PDGFRA-201ENST00000257290 LCE2CQ5TA81 110 aa2.39□□□□□ -2.03
PDGFRA-201ENST00000257290 KMT2CQ8NEZ4 4911 aaKnown RBP2.38□□□□□ -2.03
PDGFRA-201ENST00000257290 KRTAP19-1Q8IUB9 90 aa2.37□□□□□ -2.03
PDGFRA-201ENST00000257290 EPPK1P58107 5090 aaKnown RBP2.37□□□□□ -2.03
PDGFRA-201ENST00000257290 KRTAP9-8Q9BYQ0 159 aa2.36□□□□□ -2.03
PDGFRA-201ENST00000257290 KRTAP19-2Q3LHN2 52 aa2.35□□□□□ -2.03
PDGFRA-201ENST00000257290 ABCA13Q86UQ4 5058 aa2.34□□□□□ -2.03
PDGFRA-201ENST00000257290 PCLOQ9Y6V0 5065 aa2.32□□□□□ -2.04
PDGFRA-201ENST00000257290 MT1BP07438 61 aa2.31□□□□□ -2.04
PDGFRA-201ENST00000257290 KRTAP9-3Q9BYQ3 159 aa2.31□□□□□ -2.04
PDGFRA-201ENST00000257290 LPAP08519 4548 aa2.31□□□□□ -2.04
PDGFRA-201ENST00000257290 KRTAP10-7P60409 375 aaPredicted RBP2.3□□□□□ -2.04
PDGFRA-201ENST00000257290 MT1XP80297 61 aa2.3□□□□□ -2.04
PDGFRA-201ENST00000257290 KRTAP19-5Q3LI72 72 aa2.29□□□□□ -2.04
PDGFRA-201ENST00000257290 LRP2P98164 4655 aa2.27□□□□□ -2.05
PDGFRA-201ENST00000257290 PRM1P04553 51 aa2.25□□□□□ -2.05
PDGFRA-201ENST00000257290 SPRR2FQ96RM1 72 aa2.24□□□□□ -2.05
PDGFRA-201ENST00000257290 LCE3EQ5T5B0 92 aa2.24□□□□□ -2.05
PDGFRA-201ENST00000257290 FLGP20930 4061 aaPredicted RBP2.23□□□□□ -2.05
PDGFRA-201ENST00000257290 LCE2DQ5TA82 110 aaPredicted RBP2.22□□□□□ -2.05
PDGFRA-201ENST00000257290 LCE2AQ5TA79 106 aaPredicted RBP2.21□□□□□ -2.06
PDGFRA-201ENST00000257290 LCE3DQ9BYE3 92 aa2.21□□□□□ -2.06
PDGFRA-201ENST00000257290 SPRR2EP22531 72 aa2.2□□□□□ -2.06
PDGFRA-201ENST00000257290 SPRR2BP35325 72 aa2.2□□□□□ -2.06
PDGFRA-201ENST00000257290 SPRR2AP35326 72 aa2.2□□□□□ -2.06
PDGFRA-201ENST00000257290 KRTAP9-6A0A140TA67 174 aa2.2□□□□□ -2.06
PDGFRA-201ENST00000257290 HMCN2Q8NDA2 5059 aa2.2□□□□□ -2.06
PDGFRA-201ENST00000257290 KRTAP2-3P0C7H8 128 aa2.18□□□□□ -2.06
PDGFRA-201ENST00000257290 KRTAP2-4Q9BYR9 128 aa2.18□□□□□ -2.06
PDGFRA-201ENST00000257290 KRTAP2-1Q9BYU5 128 aa2.18□□□□□ -2.06
PDGFRA-201ENST00000257290 KRTAP9-2Q9BYQ4 174 aa2.18□□□□□ -2.06
PDGFRA-201ENST00000257290 LCE2BO14633 110 aa2.18□□□□□ -2.06
PDGFRA-201ENST00000257290 RNF213Q63HN8 5207 aa2.17□□□□□ -2.06
PDGFRA-201ENST00000257290 SPRR2DP22532 72 aa2.16□□□□□ -2.06
PDGFRA-201ENST00000257290 LCE3BQ5TA77 95 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms