RNA–Protein interactions for RNA: ENST00000217315.9

TM9SF4-201, Transcript of transmembrane 9 superfamily member 4, humanhuman

TSL 2 BASIC

Gene TM9SF4, Length 4,032 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-201ENST00000217315 DNAH6Q9C0G6 4158 aa6.17□□□□□ -1.42
TM9SF4-201ENST00000217315 C10orf95Q9H7T3 257 aa6.17□□□□□ -1.42
TM9SF4-201ENST00000217315 DYNC1H1Q14204 4646 aaKnown RBP6.16□□□□□ -1.42
TM9SF4-201ENST00000217315 ALMS1Q8TCU4 4167 aa6.15□□□□□ -1.42
TM9SF4-201ENST00000217315 H3BS24 57 aa6.14□□□□□ -1.43
TM9SF4-201ENST00000217315 MT1HL1P0DM35 61 aa6.14□□□□□ -1.43
TM9SF4-201ENST00000217315 HECTD4Q9Y4D8 3996 aa6.13□□□□□ -1.43
TM9SF4-201ENST00000217315 VPS13BQ7Z7G8 4022 aa6.12□□□□□ -1.43
TM9SF4-201ENST00000217315 KRTAP10-6P60371 365 aaPredicted RBP6.11□□□□□ -1.43
TM9SF4-201ENST00000217315 KRTAP13-4Q3LI77 160 aa6.09□□□□□ -1.43
TM9SF4-201ENST00000217315 KRTAP3-3Q9BYR6 98 aa6.06□□□□□ -1.44
TM9SF4-201ENST00000217315 KRTAP12-2P59991 146 aa6.04□□□□□ -1.44
TM9SF4-201ENST00000217315 HYDINQ4G0P3 5121 aa6.03□□□□□ -1.44
TM9SF4-201ENST00000217315 LUZP6Q538Z0 58 aa6□□□□□ -1.45
TM9SF4-201ENST00000217315 KRTAP3-2Q9BYR7 98 aa5.99□□□□□ -1.45
TM9SF4-201ENST00000217315 KRTAP4-5Q9BYR2 181 aa5.99□□□□□ -1.45
TM9SF4-201ENST00000217315 MYCBP2O75592 4640 aa5.99□□□□□ -1.45
TM9SF4-201ENST00000217315 KRTAP12-1P59990 96 aa5.97□□□□□ -1.45
TM9SF4-201ENST00000217315 SACSQ9NZJ4 4579 aa5.97□□□□□ -1.45
TM9SF4-201ENST00000217315 FAT2Q9NYQ8 4349 aa5.96□□□□□ -1.46
TM9SF4-201ENST00000217315 PKHD1P08F94 4074 aa5.96□□□□□ -1.46
TM9SF4-201ENST00000217315 KIAA1109Q2LD37 5005 aa5.93□□□□□ -1.46
TM9SF4-201ENST00000217315 PLAC4Q8WY50 150 aa5.92□□□□□ -1.46
TM9SF4-201ENST00000217315 LRP1Q07954 4544 aaKnown RBP5.91□□□□□ -1.46
TM9SF4-201ENST00000217315 NDUFAF8A1L188 74 aa5.91□□□□□ -1.46
TM9SF4-201ENST00000217315 APOBP04114 4563 aaKnown RBP5.89□□□□□ -1.47
TM9SF4-201ENST00000217315 RYR1P21817 5038 aa5.89□□□□□ -1.47
TM9SF4-201ENST00000217315 TNP1P09430 55 aa5.82□□□□□ -1.48
TM9SF4-201ENST00000217315 FAT3Q8TDW7 4589 aa5.81□□□□□ -1.48
TM9SF4-201ENST00000217315 RYR3Q15413 4870 aa5.81□□□□□ -1.48
TM9SF4-201ENST00000217315 KRTAP17-1Q9BYP8 105 aa5.78□□□□□ -1.48
TM9SF4-201ENST00000217315 PKD1P98161 4303 aa5.77□□□□□ -1.49
TM9SF4-201ENST00000217315 RYR2Q92736 4967 aa5.74□□□□□ -1.49
TM9SF4-201ENST00000217315 KMT2CQ8NEZ4 4911 aaKnown RBP5.74□□□□□ -1.49
TM9SF4-201ENST00000217315 PP632Q6XCG6 107 aa5.72□□□□□ -1.49
TM9SF4-201ENST00000217315 KRTAP10-10P60014 251 aa5.7□□□□□ -1.5
TM9SF4-201ENST00000217315 LORP23490 312 aaPredicted RBP5.66□□□□□ -1.5
TM9SF4-201ENST00000217315 KRTAP4-1Q9BYQ7 146 aa5.63□□□□□ -1.51
TM9SF4-201ENST00000217315 LRP2P98164 4655 aa5.62□□□□□ -1.51
TM9SF4-201ENST00000217315 A0A0A0MQY5 61 aa5.61□□□□□ -1.51
TM9SF4-201ENST00000217315 HSPG2P98160 4391 aa5.58□□□□□ -1.52
TM9SF4-201ENST00000217315 KRTAP15-1Q3LI76 137 aa5.46□□□□□ -1.53
TM9SF4-201ENST00000217315 PKHD1L1Q86WI1 4243 aa5.45□□□□□ -1.54
TM9SF4-201ENST00000217315 HERC2O95714 4834 aa5.44□□□□□ -1.54
TM9SF4-201ENST00000217315 LPAP08519 4548 aa5.41□□□□□ -1.54
TM9SF4-201ENST00000217315 TNXBP22105 4242 aa5.39□□□□□ -1.55
TM9SF4-201ENST00000217315 EPPK1P58107 5090 aaKnown RBP5.36□□□□□ -1.55
TM9SF4-201ENST00000217315 PRO2289Q9P1D8 64 aa5.32□□□□□ -1.56
TM9SF4-201ENST00000217315 ABCA13Q86UQ4 5058 aa5.22□□□□□ -1.57
TM9SF4-201ENST00000217315 MT1HP80294 61 aa5.19□□□□□ -1.58
TM9SF4-201ENST00000217315 LCE3AQ5TA76 89 aa5.15□□□□□ -1.58
TM9SF4-201ENST00000217315 SPRR2GQ9BYE4 73 aa5.13□□□□□ -1.59
TM9SF4-201ENST00000217315 MT2AP02795 61 aa5.13□□□□□ -1.59
TM9SF4-201ENST00000217315 BIRC6Q9NR09 4857 aa5.12□□□□□ -1.59
TM9SF4-201ENST00000217315 KRTAP23-1A1A580 65 aa5.11□□□□□ -1.59
TM9SF4-201ENST00000217315 KRTAP10-12P60413 245 aa5.11□□□□□ -1.59
TM9SF4-201ENST00000217315 MT1FP04733 61 aa5.1□□□□□ -1.59
TM9SF4-201ENST00000217315 KRTAP19-2Q3LHN2 52 aa5.09□□□□□ -1.59
TM9SF4-201ENST00000217315 MUC2Q02817 5179 aa5.07□□□□□ -1.6
TM9SF4-201ENST00000217315 KRTAP19-1Q8IUB9 90 aa5.05□□□□□ -1.6
TM9SF4-201ENST00000217315 HERC1Q15751 4861 aa5.03□□□□□ -1.6
TM9SF4-201ENST00000217315 KRTAP12-3P60328 96 aa5.03□□□□□ -1.6
TM9SF4-201ENST00000217315 LCE2CQ5TA81 110 aa5.02□□□□□ -1.61
TM9SF4-201ENST00000217315 MUC17Q685J3 4493 aa4.99□□□□□ -1.61
TM9SF4-201ENST00000217315 PCLOQ9Y6V0 5065 aa4.97□□□□□ -1.61
TM9SF4-201ENST00000217315 FLGP20930 4061 aaPredicted RBP4.92□□□□□ -1.62
TM9SF4-201ENST00000217315 FAT4Q6V0I7 4981 aa4.92□□□□□ -1.62
TM9SF4-201ENST00000217315 RNF213Q63HN8 5207 aa4.9□□□□□ -1.63
TM9SF4-201ENST00000217315 KRTAP9-8Q9BYQ0 159 aa4.89□□□□□ -1.63
TM9SF4-201ENST00000217315 KRTAP19-8Q3LI54 63 aa4.84□□□□□ -1.63
TM9SF4-201ENST00000217315 KRTAP8-1Q8IUC2 63 aa4.81□□□□□ -1.64
TM9SF4-201ENST00000217315 MT1BP07438 61 aa4.8□□□□□ -1.64
TM9SF4-201ENST00000217315 UBR4Q5T4S7 5183 aa4.78□□□□□ -1.64
TM9SF4-201ENST00000217315 MT1XP80297 61 aa4.78□□□□□ -1.64
TM9SF4-201ENST00000217315 HMCN2Q8NDA2 5059 aa4.78□□□□□ -1.64
TM9SF4-201ENST00000217315 KRTAP10-7P60409 375 aaPredicted RBP4.76□□□□□ -1.65
TM9SF4-201ENST00000217315 KRTAP10-5P60370 271 aa4.76□□□□□ -1.65
TM9SF4-201ENST00000217315 KRTAP9-3Q9BYQ3 159 aa4.7□□□□□ -1.66
TM9SF4-201ENST00000217315 KRTAP19-5Q3LI72 72 aa4.69□□□□□ -1.66
TM9SF4-201ENST00000217315 SPRR5A0A1B0GTR4 108 aa4.63□□□□□ -1.67
TM9SF4-201ENST00000217315 INE1O15225 51 aa4.62□□□□□ -1.67
TM9SF4-201ENST00000217315 CRCT1Q9UGL9 99 aa4.6□□□□□ -1.67
TM9SF4-201ENST00000217315 KRTAP4-8A0A0G2JLE6 195 aa4.56□□□□□ -1.68
TM9SF4-201ENST00000217315 LCE2BO14633 110 aa4.56□□□□□ -1.68
TM9SF4-201ENST00000217315 KRTAP4-8Q9BYQ9 185 aa4.56□□□□□ -1.68
TM9SF4-201ENST00000217315 LCE3CQ5T5A8 94 aa4.55□□□□□ -1.68
TM9SF4-201ENST00000217315 FSIP2Q5CZC0 6907 aa4.53□□□□□ -1.68
TM9SF4-201ENST00000217315 USH2AO75445 5202 aa4.34□□□□□ -1.71
TM9SF4-201ENST00000217315 LCE2AQ5TA79 106 aaPredicted RBP4.34□□□□□ -1.71
TM9SF4-201ENST00000217315 KRTAP4-7Q9BYR0 210 aa4.32□□□□□ -1.72
TM9SF4-201ENST00000217315 SPRR2FQ96RM1 72 aa4.29□□□□□ -1.72
TM9SF4-201ENST00000217315 KRTAP19-4Q3LI73 84 aa4.23□□□□□ -1.73
TM9SF4-201ENST00000217315 KMT2DO14686 5537 aa4.22□□□□□ -1.73
TM9SF4-201ENST00000217315 MT1LQ93083 61 aa4.2□□□□□ -1.74
TM9SF4-201ENST00000217315 MT1EP04732 61 aa4.19□□□□□ -1.74
TM9SF4-201ENST00000217315 KRTAP19-7Q3SYF9 63 aa4.18□□□□□ -1.74
TM9SF4-201ENST00000217315 MT1GP13640 62 aa4.18□□□□□ -1.74
TM9SF4-201ENST00000217315 KRTAP19-6Q3LI70 58 aa4.1□□□□□ -1.75
TM9SF4-201ENST00000217315 KRTAP19-3Q7Z4W3 81 aa4.05□□□□□ -1.76
TM9SF4-201ENST00000217315 KRTAP4-3Q9BYR4 195 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms