RNA–Protein interactions for RNA: ENST00000046640.7

CTNS-201, Transcript of cystinosin, lysosomal cystine transporter, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTNS, Length 2,866 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNS-201ENST00000046640 FAT3Q8TDW7 4589 aa6.97□□□□□ -1.29
CTNS-201ENST00000046640 TNXBP22105 4242 aa6.96□□□□□ -1.3
CTNS-201ENST00000046640 KRTAP10-8P60410 259 aa6.95□□□□□ -1.3
CTNS-201ENST00000046640 A0A1B0GU33 70 aa6.94□□□□□ -1.3
CTNS-201ENST00000046640 RYR1P21817 5038 aa6.93□□□□□ -1.3
CTNS-201ENST00000046640 CRIPTQ9P021 101 aa6.92□□□□□ -1.3
CTNS-201ENST00000046640 H1FX-AS1Q4G0G2 97 aa6.88□□□□□ -1.31
CTNS-201ENST00000046640 EPPK1P58107 5090 aaKnown RBP6.88□□□□□ -1.31
CTNS-201ENST00000046640 KRTAP25-1Q3LHN0 102 aa6.86□□□□□ -1.31
CTNS-201ENST00000046640 XP32Q5T750 250 aa6.83□□□□□ -1.32
CTNS-201ENST00000046640 COX6B2Q6YFQ2 88 aa6.83□□□□□ -1.32
CTNS-201ENST00000046640 MT1HL1P0DM35 61 aa6.8□□□□□ -1.32
CTNS-201ENST00000046640 RPL37P61927 97 aaKnown RBP6.79□□□□□ -1.32
CTNS-201ENST00000046640 ROMO1P60602 79 aa6.79□□□□□ -1.32
CTNS-201ENST00000046640 LPAP08519 4548 aa6.78□□□□□ -1.32
CTNS-201ENST00000046640 A0A0D9SG42 100 aa6.78□□□□□ -1.32
CTNS-201ENST00000046640 LRP2P98164 4655 aa6.74□□□□□ -1.33
CTNS-201ENST00000046640 K7ERS5 55 aa6.73□□□□□ -1.33
CTNS-201ENST00000046640 KRTAP4-5Q9BYR2 181 aa6.72□□□□□ -1.33
CTNS-201ENST00000046640 ABCA13Q86UQ4 5058 aa6.72□□□□□ -1.33
CTNS-201ENST00000046640 KRTAP13-4Q3LI77 160 aa6.68□□□□□ -1.34
CTNS-201ENST00000046640 KRTAP3-3Q9BYR6 98 aa6.67□□□□□ -1.34
CTNS-201ENST00000046640 KRTAP10-6P60371 365 aaPredicted RBP6.65□□□□□ -1.35
CTNS-201ENST00000046640 P0C880 135 aa6.63□□□□□ -1.35
CTNS-201ENST00000046640 S4R3F8 94 aa6.63□□□□□ -1.35
CTNS-201ENST00000046640 KRTAP3-2Q9BYR7 98 aa6.58□□□□□ -1.36
CTNS-201ENST00000046640 C10orf95Q9H7T3 257 aa6.56□□□□□ -1.36
CTNS-201ENST00000046640 TPRXLQ17RH7 258 aa6.54□□□□□ -1.36
CTNS-201ENST00000046640 SPINT4Q6UDR6 99 aa6.51□□□□□ -1.37
CTNS-201ENST00000046640 KRTAP12-2P59991 146 aa6.47□□□□□ -1.37
CTNS-201ENST00000046640 J3QL48 77 aa6.46□□□□□ -1.38
CTNS-201ENST00000046640 HERC2O95714 4834 aa6.45□□□□□ -1.38
CTNS-201ENST00000046640 MUC2Q02817 5179 aa6.38□□□□□ -1.39
CTNS-201ENST00000046640 KRTAP4-1Q9BYQ7 146 aa6.36□□□□□ -1.39
CTNS-201ENST00000046640 NDUFAF8A1L188 74 aa6.36□□□□□ -1.39
CTNS-201ENST00000046640 KRTAP12-1P59990 96 aa6.36□□□□□ -1.39
CTNS-201ENST00000046640 BIRC6Q9NR09 4857 aa6.35□□□□□ -1.39
CTNS-201ENST00000046640 A0A0A0MQY5 61 aa6.33□□□□□ -1.4
CTNS-201ENST00000046640 KRTAP15-1Q3LI76 137 aa6.33□□□□□ -1.4
CTNS-201ENST00000046640 SEC61BP60468 96 aaKnown RBP6.33□□□□□ -1.4
CTNS-201ENST00000046640 MUC17Q685J3 4493 aa6.29□□□□□ -1.4
CTNS-201ENST00000046640 PCLOQ9Y6V0 5065 aa6.27□□□□□ -1.41
CTNS-201ENST00000046640 M0QZ58 72 aa6.25□□□□□ -1.41
CTNS-201ENST00000046640 HERC1Q15751 4861 aa6.25□□□□□ -1.41
CTNS-201ENST00000046640 LORP23490 312 aaPredicted RBP6.21□□□□□ -1.42
CTNS-201ENST00000046640 R4GN34 69 aa6.2□□□□□ -1.42
CTNS-201ENST00000046640 KRTAP19-2Q3LHN2 52 aa6.12□□□□□ -1.43
CTNS-201ENST00000046640 FAT4Q6V0I7 4981 aa6.07□□□□□ -1.44
CTNS-201ENST00000046640 HMCN2Q8NDA2 5059 aa6.03□□□□□ -1.44
CTNS-201ENST00000046640 RNF213Q63HN8 5207 aa6□□□□□ -1.45
CTNS-201ENST00000046640 CAMK2N1Q7Z7J9 78 aa5.94□□□□□ -1.46
CTNS-201ENST00000046640 FLGP20930 4061 aaPredicted RBP5.93□□□□□ -1.46
CTNS-201ENST00000046640 UBR4Q5T4S7 5183 aa5.93□□□□□ -1.46
CTNS-201ENST00000046640 PLAC4Q8WY50 150 aa5.92□□□□□ -1.46
CTNS-201ENST00000046640 LCE2CQ5TA81 110 aa5.84□□□□□ -1.47
CTNS-201ENST00000046640 M0R2T5 61 aa5.84□□□□□ -1.48
CTNS-201ENST00000046640 LUZP6Q538Z0 58 aa5.79□□□□□ -1.48
CTNS-201ENST00000046640 MT1HP80294 61 aa5.71□□□□□ -1.5
CTNS-201ENST00000046640 PP632Q6XCG6 107 aa5.66□□□□□ -1.5
CTNS-201ENST00000046640 KRTAP10-10P60014 251 aa5.64□□□□□ -1.51
CTNS-201ENST00000046640 KRTAP19-1Q8IUB9 90 aa5.64□□□□□ -1.51
CTNS-201ENST00000046640 TNP1P09430 55 aa5.63□□□□□ -1.51
CTNS-201ENST00000046640 MT1FP04733 61 aa5.61□□□□□ -1.51
CTNS-201ENST00000046640 MT2AP02795 61 aa5.59□□□□□ -1.51
CTNS-201ENST00000046640 SPRR2GQ9BYE4 73 aa5.58□□□□□ -1.52
CTNS-201ENST00000046640 KRTAP9-8Q9BYQ0 159 aa5.55□□□□□ -1.52
CTNS-201ENST00000046640 SPRR5A0A1B0GTR4 108 aa5.4□□□□□ -1.55
CTNS-201ENST00000046640 LCE3AQ5TA76 89 aa5.38□□□□□ -1.55
CTNS-201ENST00000046640 MT1BP07438 61 aa5.36□□□□□ -1.55
CTNS-201ENST00000046640 KRTAP23-1A1A580 65 aa5.34□□□□□ -1.56
CTNS-201ENST00000046640 KRTAP19-8Q3LI54 63 aa5.33□□□□□ -1.56
CTNS-201ENST00000046640 USH2AO75445 5202 aa5.32□□□□□ -1.56
CTNS-201ENST00000046640 KRTAP9-3Q9BYQ3 159 aa5.3□□□□□ -1.56
CTNS-201ENST00000046640 KRTAP10-5P60370 271 aa5.3□□□□□ -1.56
CTNS-201ENST00000046640 MT1XP80297 61 aa5.29□□□□□ -1.56
CTNS-201ENST00000046640 KRTAP10-7P60409 375 aaPredicted RBP5.2□□□□□ -1.58
CTNS-201ENST00000046640 LCE2BO14633 110 aa5.17□□□□□ -1.58
CTNS-201ENST00000046640 KRTAP10-12P60413 245 aa5.15□□□□□ -1.58
CTNS-201ENST00000046640 KMT2DO14686 5537 aa5.14□□□□□ -1.59
CTNS-201ENST00000046640 KRTAP8-1Q8IUC2 63 aa5.1□□□□□ -1.59
CTNS-201ENST00000046640 PRO2289Q9P1D8 64 aa5.1□□□□□ -1.59
CTNS-201ENST00000046640 LCE2AQ5TA79 106 aaPredicted RBP5.09□□□□□ -1.6
CTNS-201ENST00000046640 KRTAP12-3P60328 96 aa5.07□□□□□ -1.6
CTNS-201ENST00000046640 FSIP2Q5CZC0 6907 aa5.05□□□□□ -1.6
CTNS-201ENST00000046640 INE1O15225 51 aa4.98□□□□□ -1.61
CTNS-201ENST00000046640 KRTAP4-8A0A0G2JLE6 195 aa4.98□□□□□ -1.61
CTNS-201ENST00000046640 KRTAP4-8Q9BYQ9 185 aa4.98□□□□□ -1.61
CTNS-201ENST00000046640 KRTAP19-5Q3LI72 72 aa4.94□□□□□ -1.62
CTNS-201ENST00000046640 SSPOA2VEC9 5147 aa4.82□□□□□ -1.64
CTNS-201ENST00000046640 LCE3CQ5T5A8 94 aa4.75□□□□□ -1.65
CTNS-201ENST00000046640 KRTAP4-7Q9BYR0 210 aa4.73□□□□□ -1.65
CTNS-201ENST00000046640 KRTAP19-7Q3SYF9 63 aa4.71□□□□□ -1.65
CTNS-201ENST00000046640 KRTAP9-6A8MVA2 160 aa4.66□□□□□ -1.66
CTNS-201ENST00000046640 FCGBPQ9Y6R7 5405 aaPredicted RBP4.58□□□□□ -1.68
CTNS-201ENST00000046640 MT1EP04732 61 aa4.57□□□□□ -1.68
CTNS-201ENST00000046640 KRTAP19-6Q3LI70 58 aa4.57□□□□□ -1.68
CTNS-201ENST00000046640 MT1LQ93083 61 aa4.56□□□□□ -1.68
CTNS-201ENST00000046640 MUC12Q9UKN1 5478 aa4.56□□□□□ -1.68
CTNS-201ENST00000046640 LCE2DQ5TA82 110 aaPredicted RBP4.49□□□□□ -1.69
CTNS-201ENST00000046640 KRTAP4-3Q9BYR4 195 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms