RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 KRTAP13-4Q3LI77 160 aa7.24□□□□□ -1.25
USH1C-201ENST00000005226 KRTAP3-3Q9BYR6 98 aa7.24□□□□□ -1.25
USH1C-201ENST00000005226 KRTAP10-6P60371 365 aaPredicted RBP7.23□□□□□ -1.25
USH1C-201ENST00000005226 KRTAP10-8P60410 259 aa7.23□□□□□ -1.25
USH1C-201ENST00000005226 K7ERS5 55 aa7.22□□□□□ -1.25
USH1C-201ENST00000005226 RYR2Q92736 4967 aa7.2□□□□□ -1.26
USH1C-201ENST00000005226 KMT2CQ8NEZ4 4911 aaKnown RBP7.18□□□□□ -1.26
USH1C-201ENST00000005226 KRTAP3-2Q9BYR7 98 aa7.17□□□□□ -1.26
USH1C-201ENST00000005226 TNXBP22105 4242 aa7.17□□□□□ -1.26
USH1C-201ENST00000005226 ROMO1P60602 79 aa7.15□□□□□ -1.26
USH1C-201ENST00000005226 RPL37P61927 97 aaKnown RBP7.14□□□□□ -1.27
USH1C-201ENST00000005226 P0C880 135 aa7.13□□□□□ -1.27
USH1C-201ENST00000005226 XP32Q5T750 250 aa7.11□□□□□ -1.27
USH1C-201ENST00000005226 S4R3F8 94 aa7.11□□□□□ -1.27
USH1C-201ENST00000005226 TPRXLQ17RH7 258 aa7.07□□□□□ -1.28
USH1C-201ENST00000005226 C10orf95Q9H7T3 257 aa7.07□□□□□ -1.28
USH1C-201ENST00000005226 LPAP08519 4548 aa7.05□□□□□ -1.28
USH1C-201ENST00000005226 Q5VSD8 79 aa7.05□□□□□ -1.28
USH1C-201ENST00000005226 KRTAP17-1Q9BYP8 105 aa7.04□□□□□ -1.28
USH1C-201ENST00000005226 KRTAP12-2P59991 146 aa7□□□□□ -1.29
USH1C-201ENST00000005226 KRTAP21-3Q3LHN1 58 aa7□□□□□ -1.29
USH1C-201ENST00000005226 SPINT4Q6UDR6 99 aa6.97□□□□□ -1.29
USH1C-201ENST00000005226 LRP2P98164 4655 aa6.96□□□□□ -1.29
USH1C-201ENST00000005226 RYR1P21817 5038 aa6.95□□□□□ -1.3
USH1C-201ENST00000005226 KIAA1109Q2LD37 5005 aa6.94□□□□□ -1.3
USH1C-201ENST00000005226 RYR3Q15413 4870 aa6.91□□□□□ -1.3
USH1C-201ENST00000005226 KRTAP12-1P59990 96 aa6.9□□□□□ -1.31
USH1C-201ENST00000005226 MT1HL1P0DM35 61 aa6.88□□□□□ -1.31
USH1C-201ENST00000005226 ABCA13Q86UQ4 5058 aa6.78□□□□□ -1.32
USH1C-201ENST00000005226 KRTAP15-1Q3LI76 137 aa6.73□□□□□ -1.33
USH1C-201ENST00000005226 M0QZ58 72 aa6.72□□□□□ -1.33
USH1C-201ENST00000005226 NDUFAF8A1L188 74 aa6.7□□□□□ -1.34
USH1C-201ENST00000005226 EPPK1P58107 5090 aaKnown RBP6.68□□□□□ -1.34
USH1C-201ENST00000005226 LORP23490 312 aaPredicted RBP6.65□□□□□ -1.34
USH1C-201ENST00000005226 R4GN34 69 aa6.63□□□□□ -1.35
USH1C-201ENST00000005226 KRTAP4-5Q9BYR2 181 aa6.61□□□□□ -1.35
USH1C-201ENST00000005226 KRTAP4-1Q9BYQ7 146 aa6.54□□□□□ -1.36
USH1C-201ENST00000005226 MUC17Q685J3 4493 aa6.54□□□□□ -1.36
USH1C-201ENST00000005226 A0A0A0MQY5 61 aa6.45□□□□□ -1.38
USH1C-201ENST00000005226 SEC61BP60468 96 aaKnown RBP6.43□□□□□ -1.38
USH1C-201ENST00000005226 MUC2Q02817 5179 aa6.43□□□□□ -1.38
USH1C-201ENST00000005226 PLAC4Q8WY50 150 aa6.39□□□□□ -1.39
USH1C-201ENST00000005226 KRTAP19-2Q3LHN2 52 aa6.34□□□□□ -1.39
USH1C-201ENST00000005226 CAMK2N1Q7Z7J9 78 aa6.34□□□□□ -1.39
USH1C-201ENST00000005226 HERC2O95714 4834 aa6.31□□□□□ -1.4
USH1C-201ENST00000005226 J3QL48 77 aa6.3□□□□□ -1.4
USH1C-201ENST00000005226 PCLOQ9Y6V0 5065 aa6.17□□□□□ -1.42
USH1C-201ENST00000005226 FLGP20930 4061 aaPredicted RBP6.16□□□□□ -1.42
USH1C-201ENST00000005226 PP632Q6XCG6 107 aa6.14□□□□□ -1.43
USH1C-201ENST00000005226 FAT4Q6V0I7 4981 aa6.11□□□□□ -1.43
USH1C-201ENST00000005226 BIRC6Q9NR09 4857 aa6.1□□□□□ -1.43
USH1C-201ENST00000005226 HERC1Q15751 4861 aa6.09□□□□□ -1.44
USH1C-201ENST00000005226 LUZP6Q538Z0 58 aa6.08□□□□□ -1.44
USH1C-201ENST00000005226 TNP1P09430 55 aa6.05□□□□□ -1.44
USH1C-201ENST00000005226 HMCN2Q8NDA2 5059 aa5.94□□□□□ -1.46
USH1C-201ENST00000005226 LCE2CQ5TA81 110 aa5.92□□□□□ -1.46
USH1C-201ENST00000005226 RNF213Q63HN8 5207 aa5.91□□□□□ -1.46
USH1C-201ENST00000005226 KRTAP19-1Q8IUB9 90 aa5.89□□□□□ -1.47
USH1C-201ENST00000005226 M0R2T5 61 aa5.86□□□□□ -1.47
USH1C-201ENST00000005226 KRTAP23-1A1A580 65 aa5.83□□□□□ -1.48
USH1C-201ENST00000005226 SPRR2GQ9BYE4 73 aa5.83□□□□□ -1.48
USH1C-201ENST00000005226 SPRR5A0A1B0GTR4 108 aa5.83□□□□□ -1.48
USH1C-201ENST00000005226 LCE3AQ5TA76 89 aa5.81□□□□□ -1.48
USH1C-201ENST00000005226 UBR4Q5T4S7 5183 aa5.78□□□□□ -1.48
USH1C-201ENST00000005226 KRTAP10-10P60014 251 aa5.75□□□□□ -1.49
USH1C-201ENST00000005226 MT1FP04733 61 aa5.74□□□□□ -1.49
USH1C-201ENST00000005226 MT1HP80294 61 aa5.74□□□□□ -1.49
USH1C-201ENST00000005226 MT2AP02795 61 aa5.7□□□□□ -1.5
USH1C-201ENST00000005226 LCE2DQ5TA82 110 aaPredicted RBP5.69□□□□□ -1.5
USH1C-201ENST00000005226 KRTAP9-8Q9BYQ0 159 aa5.64□□□□□ -1.51
USH1C-201ENST00000005226 KRTAP10-5P60370 271 aa5.56□□□□□ -1.52
USH1C-201ENST00000005226 MT1BP07438 61 aa5.55□□□□□ -1.52
USH1C-201ENST00000005226 MT1XP80297 61 aa5.55□□□□□ -1.52
USH1C-201ENST00000005226 KRTAP8-1Q8IUC2 63 aa5.54□□□□□ -1.52
USH1C-201ENST00000005226 KRTAP19-8Q3LI54 63 aa5.54□□□□□ -1.52
USH1C-201ENST00000005226 KRTAP12-3P60328 96 aa5.47□□□□□ -1.53
USH1C-201ENST00000005226 KRTAP10-7P60409 375 aaPredicted RBP5.47□□□□□ -1.53
USH1C-201ENST00000005226 KRTAP10-12P60413 245 aa5.46□□□□□ -1.54
USH1C-201ENST00000005226 KRTAP9-3Q9BYQ3 159 aa5.38□□□□□ -1.55
USH1C-201ENST00000005226 USH2AO75445 5202 aa5.33□□□□□ -1.56
USH1C-201ENST00000005226 KMT2DO14686 5537 aa5.33□□□□□ -1.56
USH1C-201ENST00000005226 PRO2289Q9P1D8 64 aa5.26□□□□□ -1.57
USH1C-201ENST00000005226 KRTAP19-5Q3LI72 72 aa5.25□□□□□ -1.57
USH1C-201ENST00000005226 LCE2BO14633 110 aa5.2□□□□□ -1.58
USH1C-201ENST00000005226 INE1O15225 51 aa5.18□□□□□ -1.58
USH1C-201ENST00000005226 KRTAP4-8A0A0G2JLE6 195 aa5.17□□□□□ -1.58
USH1C-201ENST00000005226 KRTAP4-8Q9BYQ9 185 aa5.17□□□□□ -1.58
USH1C-201ENST00000005226 LCE3CQ5T5A8 94 aa5.15□□□□□ -1.58
USH1C-201ENST00000005226 KRTAP9-6A8MVA2 160 aa5.08□□□□□ -1.6
USH1C-201ENST00000005226 KRTAP4-7Q9BYR0 210 aa5.05□□□□□ -1.6
USH1C-201ENST00000005226 KRTAP19-7Q3SYF9 63 aa4.95□□□□□ -1.62
USH1C-201ENST00000005226 LCE2AQ5TA79 106 aaPredicted RBP4.92□□□□□ -1.62
USH1C-201ENST00000005226 FSIP2Q5CZC0 6907 aa4.84□□□□□ -1.63
USH1C-201ENST00000005226 KRTAP2-3P0C7H8 128 aa4.82□□□□□ -1.64
USH1C-201ENST00000005226 KRTAP2-4Q9BYR9 128 aa4.82□□□□□ -1.64
USH1C-201ENST00000005226 KRTAP2-1Q9BYU5 128 aa4.82□□□□□ -1.64
USH1C-201ENST00000005226 MT1LQ93083 61 aa4.8□□□□□ -1.64
USH1C-201ENST00000005226 SSPOA2VEC9 5147 aa4.78□□□□□ -1.64
USH1C-201ENST00000005226 MT1EP04732 61 aa4.77□□□□□ -1.65
USH1C-201ENST00000005226 LOC100996750A0A140TA64 210 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 331.3 ms