RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 DNAL4O96015 105 aa7.1□□□□□ -1.27
LINC00339-211ENST00000641009 ANKRD29Q8N6D5 301 aa7.1□□□□□ -1.27
LINC00339-211ENST00000641009 ORMDL1Q9P0S3 153 aa7.09□□□□□ -1.27
LINC00339-211ENST00000641009 TRBV7-4A0A0J9YYF1 115 aa7.08□□□□□ -1.28
LINC00339-211ENST00000641009 IGKV4-1P06312 121 aa7.08□□□□□ -1.28
LINC00339-211ENST00000641009 ATXN8Q156A1 80 aa7.08□□□□□ -1.28
LINC00339-211ENST00000641009 KRTAP16-1A8MUX0 517 aa7.07□□□□□ -1.28
LINC00339-211ENST00000641009 LINC00313P59037 77 aa7.07□□□□□ -1.28
LINC00339-211ENST00000641009 MTURNQ8N3F0 131 aa7.07□□□□□ -1.28
LINC00339-211ENST00000641009 SCGB1A1P11684 91 aa7.06□□□□□ -1.28
LINC00339-211ENST00000641009 DEFB116Q30KQ4 102 aa7.06□□□□□ -1.28
LINC00339-211ENST00000641009 COX6CP09669 75 aa7.05□□□□□ -1.28
LINC00339-211ENST00000641009 NOTCH2NLQ7Z3S9 236 aa7.05□□□□□ -1.28
LINC00339-211ENST00000641009 TMEM256-PLSCR3K7ERE1 68 aa7.04□□□□□ -1.28
LINC00339-211ENST00000641009 KRTAP9-8Q9BYQ0 159 aa7.04□□□□□ -1.28
LINC00339-211ENST00000641009 C9JAW5 83 aa7.04□□□□□ -1.28
LINC00339-211ENST00000641009 H3BQ85 93 aa7.04□□□□□ -1.28
LINC00339-211ENST00000641009 CCKP06307 115 aa7.04□□□□□ -1.28
LINC00339-211ENST00000641009 H3BT86 120 aa7.03□□□□□ -1.28
LINC00339-211ENST00000641009 LINC00472Q9H8W2 130 aa7.03□□□□□ -1.28
LINC00339-211ENST00000641009 TRACP01848 142 aa7.02□□□□□ -1.29
LINC00339-211ENST00000641009 IGHV6-1A0A0B4J1U7 121 aa7□□□□□ -1.29
LINC00339-211ENST00000641009 FAM236DA0A1B0GTK5 79 aa6.99□□□□□ -1.29
LINC00339-211ENST00000641009 FAM236CP0DP71 79 aa6.99□□□□□ -1.29
LINC00339-211ENST00000641009 USH2AO75445 5202 aa6.97□□□□□ -1.29
LINC00339-211ENST00000641009 HRES1P13985 223 aa6.97□□□□□ -1.29
LINC00339-211ENST00000641009 MPLKIPQ8TAP9 179 aa6.96□□□□□ -1.3
LINC00339-211ENST00000641009 RBM12B-AS1Q9P1G2 102 aa6.95□□□□□ -1.3
LINC00339-211ENST00000641009 SSPOA2VEC9 5147 aa6.94□□□□□ -1.3
LINC00339-211ENST00000641009 RBM3P98179 157 aaKnown RBP6.94□□□□□ -1.3
LINC00339-211ENST00000641009 A0A1B0GVX0 72 aa6.93□□□□□ -1.3
LINC00339-211ENST00000641009 MT2AP02795 61 aa6.93□□□□□ -1.3
LINC00339-211ENST00000641009 FAM240AA0A1B0GVK7 77 aa6.92□□□□□ -1.3
LINC00339-211ENST00000641009 DSCR8Q96T75 97 aa6.92□□□□□ -1.3
LINC00339-211ENST00000641009 C8orf87E5RJ46 101 aa6.92□□□□□ -1.3
LINC00339-211ENST00000641009 MT-ATP8P03928 68 aa6.91□□□□□ -1.3
LINC00339-211ENST00000641009 BAALC-AS2P0C853 105 aa6.9□□□□□ -1.31
LINC00339-211ENST00000641009 MT1FP04733 61 aa6.89□□□□□ -1.31
LINC00339-211ENST00000641009 ACYP1P07311 99 aa6.88□□□□□ -1.31
LINC00339-211ENST00000641009 ZCCHC13Q8WW36 166 aaKnown RBP6.87□□□□□ -1.31
LINC00339-211ENST00000641009 J3KT08 172 aa6.86□□□□□ -1.31
LINC00339-211ENST00000641009 Q6ZQT0 140 aa6.86□□□□□ -1.31
LINC00339-211ENST00000641009 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.85□□□□□ -1.31
LINC00339-211ENST00000641009 KRTAP10-10P60014 251 aa6.84□□□□□ -1.31
LINC00339-211ENST00000641009 LCE2BO14633 110 aa6.83□□□□□ -1.32
LINC00339-211ENST00000641009 SPINK7P58062 85 aa6.83□□□□□ -1.32
LINC00339-211ENST00000641009 NDUFB1O75438 58 aa6.82□□□□□ -1.32
LINC00339-211ENST00000641009 KRTAP9-3Q9BYQ3 159 aa6.82□□□□□ -1.32
LINC00339-211ENST00000641009 Q8N9P0 234 aaPredicted RBP6.81□□□□□ -1.32
LINC00339-211ENST00000641009 KRTAP9-7A8MTY7 169 aa6.79□□□□□ -1.32
LINC00339-211ENST00000641009 IMUPQ9GZP8 106 aa6.79□□□□□ -1.32
LINC00339-211ENST00000641009 C8orf17Q9NRJ1 99 aa6.79□□□□□ -1.32
LINC00339-211ENST00000641009 FCGBPQ9Y6R7 5405 aaPredicted RBP6.79□□□□□ -1.32
LINC00339-211ENST00000641009 LOC110117498A0A087WWA1 95 aa6.79□□□□□ -1.32
LINC00339-211ENST00000641009 A8MWP4 228 aa6.79□□□□□ -1.32
LINC00339-211ENST00000641009 JMJD7-PLA2G4BH0Y9G9 81 aa6.79□□□□□ -1.32
LINC00339-211ENST00000641009 IGKV3D-7A0A0C4DH55 119 aa6.78□□□□□ -1.32
LINC00339-211ENST00000641009 LINC00643Q86TS7 51 aa6.78□□□□□ -1.32
LINC00339-211ENST00000641009 KRTAP19-1Q8IUB9 90 aa6.76□□□□□ -1.33
LINC00339-211ENST00000641009 C14orf132Q9NPU4 83 aa6.76□□□□□ -1.33
LINC00339-211ENST00000641009 A0A1B0GW54 56 aa6.75□□□□□ -1.33
LINC00339-211ENST00000641009 WFDC13Q8IUB5 93 aa6.75□□□□□ -1.33
LINC00339-211ENST00000641009 Q6ZVQ6 151 aa6.74□□□□□ -1.33
LINC00339-211ENST00000641009 PDE6GP18545 87 aa6.73□□□□□ -1.33
LINC00339-211ENST00000641009 ANAPC13Q9BS18 74 aa6.72□□□□□ -1.33
LINC00339-211ENST00000641009 PRR15Q8IV56 129 aa6.71□□□□□ -1.34
LINC00339-211ENST00000641009 NREPQ16612 68 aa6.7□□□□□ -1.34
LINC00339-211ENST00000641009 MMP24-AS1A0A0U1RRL7 71 aa6.68□□□□□ -1.34
LINC00339-211ENST00000641009 MRPL34Q9BQ48 92 aaKnown RBP6.67□□□□□ -1.34
LINC00339-211ENST00000641009 LINC00846Q9NV44 126 aa6.67□□□□□ -1.34
LINC00339-211ENST00000641009 TMEM254Q8TBM7 123 aa6.66□□□□□ -1.34
LINC00339-211ENST00000641009 K7EQZ3 153 aa6.65□□□□□ -1.35
LINC00339-211ENST00000641009 HIST1H4AP62805 103 aaKnown RBP6.65□□□□□ -1.35
LINC00339-211ENST00000641009 MACF1Q9UPN3 7388 aaKnown RBP6.64□□□□□ -1.35
LINC00339-211ENST00000641009 hDV103S1A0JD37 113 aa6.63□□□□□ -1.35
LINC00339-211ENST00000641009 NDUFS5O43920 106 aa6.63□□□□□ -1.35
LINC00339-211ENST00000641009 FAM236AA0A1B0GUQ0 79 aa6.61□□□□□ -1.35
LINC00339-211ENST00000641009 FAM236BA0A1B0GV22 79 aa6.61□□□□□ -1.35
LINC00339-211ENST00000641009 ATP5EP2Q5VTU8 51 aa6.61□□□□□ -1.35
LINC00339-211ENST00000641009 CCDC179H3BU77 68 aa6.6□□□□□ -1.35
LINC00339-211ENST00000641009 H1FX-AS1Q4G0G2 97 aa6.6□□□□□ -1.35
LINC00339-211ENST00000641009 KRTAP19-6Q3LI70 58 aa6.59□□□□□ -1.36
LINC00339-211ENST00000641009 SYNE2Q8WXH0 6885 aaKnown RBP6.57□□□□□ -1.36
LINC00339-211ENST00000641009 IGKV2D-30A0A075B6S6 120 aa6.57□□□□□ -1.36
LINC00339-211ENST00000641009 ATOX1O00244 68 aa6.57□□□□□ -1.36
LINC00339-211ENST00000641009 BPY2O14599 106 aa6.57□□□□□ -1.36
LINC00339-211ENST00000641009 IGKV2-30P06310 120 aa6.57□□□□□ -1.36
LINC00339-211ENST00000641009 SEC61GP60059 68 aa6.57□□□□□ -1.36
LINC00339-211ENST00000641009 Q5W150 140 aa6.57□□□□□ -1.36
LINC00339-211ENST00000641009 UBL5Q9BZL1 73 aa6.56□□□□□ -1.36
LINC00339-211ENST00000641009 UQCRQO14949 82 aa6.55□□□□□ -1.36
LINC00339-211ENST00000641009 C7orf65Q6ZTY9 151 aa6.54□□□□□ -1.36
LINC00339-211ENST00000641009 COX7CP15954 63 aa6.53□□□□□ -1.36
LINC00339-211ENST00000641009 Q8N9L7 120 aa6.53□□□□□ -1.36
LINC00339-211ENST00000641009 CASC2Q6XLA1 102 aa6.51□□□□□ -1.37
LINC00339-211ENST00000641009 HCG22E2RYF7 251 aa6.5□□□□□ -1.37
LINC00339-211ENST00000641009 CXCL6P80162 114 aa6.5□□□□□ -1.37
LINC00339-211ENST00000641009 A0A087WVE0 104 aa6.49□□□□□ -1.37
LINC00339-211ENST00000641009 SERP2Q8N6R1 65 aa6.49□□□□□ -1.37
LINC00339-211ENST00000641009 C5orf47Q569G3 176 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms