RNA–Protein interactions for RNA: ENST00000640058.1

CCDC7-216, Transcript of coiled-coil domain containing 7, humanhuman

TSL 3

Gene CCDC7, Length 251 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC7-216ENST00000640058 DEFB124Q8NES8 71 aa0.36□□□□□ -2.35
CCDC7-216ENST00000640058 CHD9Q3L8U1 2897 aa0.36□□□□□ -2.35
CCDC7-216ENST00000640058 REV3LO60673 3130 aa0.36□□□□□ -2.35
CCDC7-216ENST00000640058 SPTA1P02549 2419 aa0.36□□□□□ -2.35
CCDC7-216ENST00000640058 A0A0C4DFX4 3053 aa0.35□□□□□ -2.35
CCDC7-216ENST00000640058 NCOR1O75376 2440 aa0.35□□□□□ -2.35
CCDC7-216ENST00000640058 CD52P31358 61 aa0.35□□□□□ -2.35
CCDC7-216ENST00000640058 WNK1Q9H4A3 2382 aa0.35□□□□□ -2.35
CCDC7-216ENST00000640058 VWFP04275 2813 aa0.35□□□□□ -2.35
CCDC7-216ENST00000640058 ACACAQ13085 2346 aa0.35□□□□□ -2.35
CCDC7-216ENST00000640058 CREBBPQ92793 2442 aa0.34□□□□□ -2.35
CCDC7-216ENST00000640058 CELSR1Q9NYQ6 3014 aa0.34□□□□□ -2.35
CCDC7-216ENST00000640058 AHNAKQ09666 5890 aaKnown RBP0.34□□□□□ -2.35
CCDC7-216ENST00000640058 DEFB1P60022 68 aa0.34□□□□□ -2.36
CCDC7-216ENST00000640058 NBASA2RRP1 2371 aa0.34□□□□□ -2.36
CCDC7-216ENST00000640058 MAST4O15021 2626 aa0.34□□□□□ -2.36
CCDC7-216ENST00000640058 HECTD1Q9ULT8 2610 aa0.34□□□□□ -2.36
CCDC7-216ENST00000640058 HIVEP3Q5T1R4 2406 aa0.33□□□□□ -2.36
CCDC7-216ENST00000640058 MUC5BQ9HC84 5762 aaPredicted RBP0.33□□□□□ -2.36
CCDC7-216ENST00000640058 ANK2Q01484 3957 aa0.33□□□□□ -2.36
CCDC7-216ENST00000640058 STATHP02808 62 aa0.33□□□□□ -2.36
CCDC7-216ENST00000640058 SPRR2DP22532 72 aa0.33□□□□□ -2.36
CCDC7-216ENST00000640058 SPRR2BP35325 72 aa0.33□□□□□ -2.36
CCDC7-216ENST00000640058 RPS29P62273 56 aaKnown RBP0.33□□□□□ -2.36
CCDC7-216ENST00000640058 KRTAP8-1Q8IUC2 63 aa0.33□□□□□ -2.36
CCDC7-216ENST00000640058 DEFB108BQ8NET1 73 aa0.33□□□□□ -2.36
CCDC7-216ENST00000640058 CHD8Q9HCK8 2581 aa0.33□□□□□ -2.36
CCDC7-216ENST00000640058 SRRM2Q9UQ35 2752 aaKnown RBP0.33□□□□□ -2.36
CCDC7-216ENST00000640058 PTPN13Q12923 2485 aa0.32□□□□□ -2.36
CCDC7-216ENST00000640058 CCDC168Q8NDH2 2452 aa0.32□□□□□ -2.36
CCDC7-216ENST00000640058 APC2O95996 2303 aa0.32□□□□□ -2.36
CCDC7-216ENST00000640058 CHD6Q8TD26 2715 aa0.32□□□□□ -2.36
CCDC7-216ENST00000640058 DMBT1Q9UGM3 2413 aaPredicted RBP0.32□□□□□ -2.36
CCDC7-216ENST00000640058 ATRQ13535 2644 aa0.32□□□□□ -2.36
CCDC7-216ENST00000640058 AKAP13Q12802 2813 aa0.32□□□□□ -2.36
CCDC7-216ENST00000640058 MTORP42345 2549 aa0.32□□□□□ -2.36
CCDC7-216ENST00000640058 MDN1Q9NU22 5596 aa0.32□□□□□ -2.36
CCDC7-216ENST00000640058 ACANP16112 2415 aa0.32□□□□□ -2.36
CCDC7-216ENST00000640058 PIEZO1Q92508 2521 aa0.31□□□□□ -2.36
CCDC7-216ENST00000640058 A0A096LPF7 62 aa0.31□□□□□ -2.36
CCDC7-216ENST00000640058 SPRR2AP35326 72 aa0.31□□□□□ -2.36
CCDC7-216ENST00000640058 LINC01556Q5JQF7 62 aa0.31□□□□□ -2.36
CCDC7-216ENST00000640058 TNRC18O15417 2968 aaPredicted RBP0.31□□□□□ -2.36
CCDC7-216ENST00000640058 TENM2Q9NT68 2774 aa0.31□□□□□ -2.36
CCDC7-216ENST00000640058 FAT4Q6V0I7 4981 aa0.3□□□□□ -2.36
CCDC7-216ENST00000640058 SPTBN4Q9H254 2564 aa0.3□□□□□ -2.36
CCDC7-216ENST00000640058 MT1AP04731 61 aa0.3□□□□□ -2.36
CCDC7-216ENST00000640058 COX14Q96I36 57 aa0.3□□□□□ -2.36
CCDC7-216ENST00000640058 UBR5O95071 2799 aaPredicted RBP0.3□□□□□ -2.36
CCDC7-216ENST00000640058 OTOGQ6ZRI0 2925 aa0.3□□□□□ -2.36
CCDC7-216ENST00000640058 CSMD3Q7Z407 3707 aa0.29□□□□□ -2.36
CCDC7-216ENST00000640058 SYNE1Q8NF91 8797 aaKnown RBP0.29□□□□□ -2.36
CCDC7-216ENST00000640058 CHD7Q9P2D1 2997 aa0.29□□□□□ -2.36
CCDC7-216ENST00000640058 NCOR2Q9Y618 2525 aa0.28□□□□□ -2.36
CCDC7-216ENST00000640058 SMR3BP02814 79 aaPredicted RBP0.28□□□□□ -2.36
CCDC7-216ENST00000640058 FAM186AA6NE01 2351 aa0.28□□□□□ -2.36
CCDC7-216ENST00000640058 MAP1BP46821 2468 aaKnown RBP0.28□□□□□ -2.36
CCDC7-216ENST00000640058 UNC79Q9P2D8 2635 aa0.28□□□□□ -2.37
CCDC7-216ENST00000640058 SETD2Q9BYW2 2564 aaPredicted RBP0.27□□□□□ -2.37
CCDC7-216ENST00000640058 SPRR2EP22531 72 aa0.27□□□□□ -2.37
CCDC7-216ENST00000640058 KRTAP6-2Q3LI66 62 aa0.27□□□□□ -2.37
CCDC7-216ENST00000640058 ACACBO00763 2458 aa0.27□□□□□ -2.37
CCDC7-216ENST00000640058 ZFYVE26Q68DK2 2539 aa0.27□□□□□ -2.37
CCDC7-216ENST00000640058 GCN1Q92616 2671 aaKnown RBP0.27□□□□□ -2.37
CCDC7-216ENST00000640058 PKD1L1Q8TDX9 2849 aa0.27□□□□□ -2.37
CCDC7-216ENST00000640058 TNXBP22105 4242 aa0.27□□□□□ -2.37
CCDC7-216ENST00000640058 SONP18583 2426 aaKnown RBP0.26□□□□□ -2.37
CCDC7-216ENST00000640058 CACNA1AO00555 2505 aa0.26□□□□□ -2.37
CCDC7-216ENST00000640058 STAB1Q9NY15 2570 aa0.26□□□□□ -2.37
CCDC7-216ENST00000640058 NF1P21359 2839 aa0.26□□□□□ -2.37
CCDC7-216ENST00000640058 HTN3P15516 51 aa0.26□□□□□ -2.37
CCDC7-216ENST00000640058 SPRR2FQ96RM1 72 aa0.26□□□□□ -2.37
CCDC7-216ENST00000640058 RIF1Q5UIP0 2472 aaKnown RBP0.26□□□□□ -2.37
CCDC7-216ENST00000640058 FLNBO75369 2602 aaKnown RBP0.26□□□□□ -2.37
CCDC7-216ENST00000640058 FLNCQ14315 2725 aa0.25□□□□□ -2.37
CCDC7-216ENST00000640058 LRRK2Q5S007 2527 aa0.25□□□□□ -2.37
CCDC7-216ENST00000640058 KRTAP19-5Q3LI72 72 aa0.25□□□□□ -2.37
CCDC7-216ENST00000640058 SPG11Q96JI7 2443 aa0.25□□□□□ -2.37
CCDC7-216ENST00000640058 SETXQ7Z333 2677 aaKnown RBP0.24□□□□□ -2.37
CCDC7-216ENST00000640058 IGSF10Q6WRI0 2623 aa0.24□□□□□ -2.37
CCDC7-216ENST00000640058 BSNQ9UPA5 3926 aa0.24□□□□□ -2.37
CCDC7-216ENST00000640058 NBEAL2Q6ZNJ1 2754 aa0.24□□□□□ -2.37
CCDC7-216ENST00000640058 NSD1Q96L73 2696 aaPredicted RBP0.24□□□□□ -2.37
CCDC7-216ENST00000640058 ANKHD1Q8IWZ3 2542 aaKnown RBP0.24□□□□□ -2.37
CCDC7-216ENST00000640058 FRYQ5TBA9 3013 aa0.24□□□□□ -2.37
CCDC7-216ENST00000640058 PDZD2O15018 2839 aa0.23□□□□□ -2.37
CCDC7-216ENST00000640058 ANKRD11Q6UB99 2663 aaPredicted RBP0.23□□□□□ -2.37
CCDC7-216ENST00000640058 EPG5Q9HCE0 2579 aa0.23□□□□□ -2.37
CCDC7-216ENST00000640058 DEFB4AO15263 64 aa0.23□□□□□ -2.37
CCDC7-216ENST00000640058 ITPR3Q14573 2671 aa0.23□□□□□ -2.37
CCDC7-216ENST00000640058 DMXL1Q9Y485 3027 aa0.23□□□□□ -2.37
CCDC7-216ENST00000640058 CRYBG3Q68DQ2 2970 aa0.23□□□□□ -2.37
CCDC7-216ENST00000640058 LYSTQ99698 3801 aa0.23□□□□□ -2.37
CCDC7-216ENST00000640058 CELSR3Q9NYQ7 3312 aa0.23□□□□□ -2.37
CCDC7-216ENST00000640058 UTP20O75691 2785 aaKnown RBP0.23□□□□□ -2.37
CCDC7-216ENST00000640058 VPS13DQ5THJ4 4388 aa0.22□□□□□ -2.37
CCDC7-216ENST00000640058 COL12A1Q99715 3063 aa0.22□□□□□ -2.37
CCDC7-216ENST00000640058 USP9YO00507 2555 aaPredicted RBP0.22□□□□□ -2.37
CCDC7-216ENST00000640058 COL7A1Q02388 2944 aa0.22□□□□□ -2.37
CCDC7-216ENST00000640058 SACSQ9NZJ4 4579 aa0.22□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms