RNA–Protein interactions for RNA: ENST00000639856.1

TRIM3-215, Transcript of tripartite motif containing 3, humanhuman

TSL 5 BASIC

Gene TRIM3, Length 2,137 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-215ENST00000639856 LINC00208Q96KT6 92 aa8.87□□□□□ -0.99
TRIM3-215ENST00000639856 C8orf17Q9NRJ1 99 aa8.87□□□□□ -0.99
TRIM3-215ENST00000639856 H3BPC8 53 aa8.86□□□□□ -0.99
TRIM3-215ENST00000639856 CDK2AP2O75956 126 aa8.86□□□□□ -0.99
TRIM3-215ENST00000639856 SMR3BP02814 79 aaPredicted RBP8.86□□□□□ -0.99
TRIM3-215ENST00000639856 CD164Q04900 197 aa8.86□□□□□ -0.99
TRIM3-215ENST00000639856 IGHV6-1A0A0B4J1U7 121 aa8.84□□□□□ -0.99
TRIM3-215ENST00000639856 TRAV22A0A0B4J277 110 aa8.84□□□□□ -0.99
TRIM3-215ENST00000639856 A0A087X002 238 aa8.84□□□□□ -0.99
TRIM3-215ENST00000639856 FAM229BQ4G0N7 80 aa8.83□□□□□ -1
TRIM3-215ENST00000639856 TP53AIP1Q9HCN2 124 aa8.81□□□□□ -1
TRIM3-215ENST00000639856 KRTAP1-4P0C5Y4 121 aa8.81□□□□□ -1
TRIM3-215ENST00000639856 KRTAP13-2Q52LG2 175 aa8.8□□□□□ -1
TRIM3-215ENST00000639856 APOBP04114 4563 aaKnown RBP8.8□□□□□ -1
TRIM3-215ENST00000639856 C1orf64Q8NEQ6 169 aa8.79□□□□□ -1
TRIM3-215ENST00000639856 RYR3Q15413 4870 aa8.79□□□□□ -1
TRIM3-215ENST00000639856 SPINK6Q6UWN8 80 aa8.78□□□□□ -1
TRIM3-215ENST00000639856 CYP4F30PQ9H0H9 118 aa8.78□□□□□ -1
TRIM3-215ENST00000639856 MRPL34Q9BQ48 92 aaKnown RBP8.78□□□□□ -1
TRIM3-215ENST00000639856 NOTCH2NLQ7Z3S9 236 aa8.77□□□□□ -1.01
TRIM3-215ENST00000639856 NDUFS5O43920 106 aa8.75□□□□□ -1.01
TRIM3-215ENST00000639856 BRK1Q8WUW1 75 aa8.75□□□□□ -1.01
TRIM3-215ENST00000639856 PRR4Q16378 134 aa8.74□□□□□ -1.01
TRIM3-215ENST00000639856 SPANXA2-OT1Q8N9U9 137 aa8.74□□□□□ -1.01
TRIM3-215ENST00000639856 MPLKIPQ8TAP9 179 aa8.74□□□□□ -1.01
TRIM3-215ENST00000639856 FAT1Q14517 4588 aa8.74□□□□□ -1.01
TRIM3-215ENST00000639856 KRTAP10-4P60372 401 aaPredicted RBP8.73□□□□□ -1.01
TRIM3-215ENST00000639856 PLA2G1BP04054 148 aaKnown RBP8.72□□□□□ -1.01
TRIM3-215ENST00000639856 C8orf87E5RJ46 101 aa8.68□□□□□ -1.02
TRIM3-215ENST00000639856 C1orf195Q5TG92 126 aa8.66□□□□□ -1.02
TRIM3-215ENST00000639856 PRR26Q8N8Z3 221 aa8.65□□□□□ -1.02
TRIM3-215ENST00000639856 TYMSOSQ8TAI1 123 aa8.64□□□□□ -1.03
TRIM3-215ENST00000639856 IGLV7-46A0A075B6I9 117 aa8.63□□□□□ -1.03
TRIM3-215ENST00000639856 PCOTHQ58A44 107 aa8.63□□□□□ -1.03
TRIM3-215ENST00000639856 LIMD2Q9BT23 127 aa8.63□□□□□ -1.03
TRIM3-215ENST00000639856 LINC00313P59037 77 aa8.62□□□□□ -1.03
TRIM3-215ENST00000639856 Q1T7F1 81 aa8.6□□□□□ -1.03
TRIM3-215ENST00000639856 KRTAP13-3Q3SY46 172 aa8.6□□□□□ -1.03
TRIM3-215ENST00000639856 Q5W150 140 aa8.6□□□□□ -1.03
TRIM3-215ENST00000639856 C4orf48Q5BLP8 95 aa8.59□□□□□ -1.03
TRIM3-215ENST00000639856 HSPG2P98160 4391 aa8.58□□□□□ -1.04
TRIM3-215ENST00000639856 LOC101927531A0A1B0GV80 90 aa8.57□□□□□ -1.04
TRIM3-215ENST00000639856 Q8N9P0 234 aaPredicted RBP8.57□□□□□ -1.04
TRIM3-215ENST00000639856 SPINK1P00995 79 aa8.56□□□□□ -1.04
TRIM3-215ENST00000639856 V9GYY9 64 aa8.56□□□□□ -1.04
TRIM3-215ENST00000639856 FAM229AH3BQW9 127 aa8.55□□□□□ -1.04
TRIM3-215ENST00000639856 KRTAP17-1Q9BYP8 105 aa8.55□□□□□ -1.04
TRIM3-215ENST00000639856 Q5VSD8 79 aa8.54□□□□□ -1.04
TRIM3-215ENST00000639856 LINC00304Q8N9R0 145 aa8.54□□□□□ -1.04
TRIM3-215ENST00000639856 KRTAP16-1A8MUX0 517 aa8.52□□□□□ -1.05
TRIM3-215ENST00000639856 COA5Q86WW8 74 aa8.51□□□□□ -1.05
TRIM3-215ENST00000639856 SEC61GP60059 68 aa8.5□□□□□ -1.05
TRIM3-215ENST00000639856 RYR1P21817 5038 aa8.49□□□□□ -1.05
TRIM3-215ENST00000639856 RPS29P62273 56 aaKnown RBP8.48□□□□□ -1.05
TRIM3-215ENST00000639856 KIAA1109Q2LD37 5005 aa8.48□□□□□ -1.05
TRIM3-215ENST00000639856 EPPK1P58107 5090 aaKnown RBP8.48□□□□□ -1.05
TRIM3-215ENST00000639856 PKHD1L1Q86WI1 4243 aa8.48□□□□□ -1.05
TRIM3-215ENST00000639856 PSPHP1O15172 72 aa8.47□□□□□ -1.05
TRIM3-215ENST00000639856 SPAG11AQ6PDA7 123 aa8.47□□□□□ -1.05
TRIM3-215ENST00000639856 FLG2Q5D862 2391 aaPredicted RBP8.44□□□□□ -1.06
TRIM3-215ENST00000639856 RETNLBQ9BQ08 111 aa8.44□□□□□ -1.06
TRIM3-215ENST00000639856 LRP1Q07954 4544 aaKnown RBP8.43□□□□□ -1.06
TRIM3-215ENST00000639856 HRES1P13985 223 aa8.42□□□□□ -1.06
TRIM3-215ENST00000639856 IGKV2-30P06310 120 aa8.42□□□□□ -1.06
TRIM3-215ENST00000639856 A8MU10 97 aa8.4□□□□□ -1.06
TRIM3-215ENST00000639856 PMAIP1Q13794 54 aa8.4□□□□□ -1.06
TRIM3-215ENST00000639856 A8MUN3 132 aa8.39□□□□□ -1.07
TRIM3-215ENST00000639856 Q8N1X5 172 aa8.37□□□□□ -1.07
TRIM3-215ENST00000639856 KRTAP10-8P60410 259 aa8.35□□□□□ -1.07
TRIM3-215ENST00000639856 ACYP2P14621 99 aa8.35□□□□□ -1.07
TRIM3-215ENST00000639856 Q5VV11 94 aa8.35□□□□□ -1.07
TRIM3-215ENST00000639856 TNXBP22105 4242 aa8.34□□□□□ -1.07
TRIM3-215ENST00000639856 DMAC1Q96GE9 116 aa8.33□□□□□ -1.08
TRIM3-215ENST00000639856 PRR15LQ9BU68 103 aa8.32□□□□□ -1.08
TRIM3-215ENST00000639856 IGKV2D-30A0A075B6S6 120 aa8.31□□□□□ -1.08
TRIM3-215ENST00000639856 MYCBP2O75592 4640 aa8.31□□□□□ -1.08
TRIM3-215ENST00000639856 DMBT1Q9UGM3 2413 aaPredicted RBP8.3□□□□□ -1.08
TRIM3-215ENST00000639856 LINC01558Q9Y6Z2 57 aa8.29□□□□□ -1.08
TRIM3-215ENST00000639856 FAT3Q8TDW7 4589 aa8.28□□□□□ -1.08
TRIM3-215ENST00000639856 KRTAP4-5Q9BYR2 181 aa8.26□□□□□ -1.09
TRIM3-215ENST00000639856 C9orf92A6NGG3 77 aa8.25□□□□□ -1.09
TRIM3-215ENST00000639856 CHKB-CPT1BH3BT56 60 aa8.25□□□□□ -1.09
TRIM3-215ENST00000639856 Q75L30 129 aa8.25□□□□□ -1.09
TRIM3-215ENST00000639856 MT1HL1P0DM35 61 aa8.24□□□□□ -1.09
TRIM3-215ENST00000639856 C7orf65Q6ZTY9 151 aa8.23□□□□□ -1.09
TRIM3-215ENST00000639856 C20orf166-AS1Q96NR2 134 aa8.22□□□□□ -1.09
TRIM3-215ENST00000639856 A8MUU9 505 aa8.21□□□□□ -1.09
TRIM3-215ENST00000639856 LCA10Q71F78 164 aa8.18□□□□□ -1.1
TRIM3-215ENST00000639856 A6NED7 52 aa8.15□□□□□ -1.11
TRIM3-215ENST00000639856 SPTSSBQ8NFR3 76 aa8.14□□□□□ -1.11
TRIM3-215ENST00000639856 KTN1-AS1Q86SY8 53 aa8.14□□□□□ -1.11
TRIM3-215ENST00000639856 ATP11AUNQ6ZP68 121 aa8.12□□□□□ -1.11
TRIM3-215ENST00000639856 CDC42SE1Q9NRR8 79 aa8.11□□□□□ -1.11
TRIM3-215ENST00000639856 A6NN06 94 aa8.09□□□□□ -1.11
TRIM3-215ENST00000639856 RBM12B-AS1Q9P1G2 102 aa8.09□□□□□ -1.11
TRIM3-215ENST00000639856 SPINK7P58062 85 aa8.06□□□□□ -1.12
TRIM3-215ENST00000639856 A0A1B0GU69 56 aa8.04□□□□□ -1.12
TRIM3-215ENST00000639856 ABCA13Q86UQ4 5058 aa8.04□□□□□ -1.12
TRIM3-215ENST00000639856 BIRC6Q9NR09 4857 aa8.02□□□□□ -1.13
TRIM3-215ENST00000639856 XP32Q5T750 250 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms