RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 WFDC13Q8IUB5 93 aa10.87□□□□□ -0.67
CLN3-263ENST00000637871 H3BPC8 53 aa10.85□□□□□ -0.67
CLN3-263ENST00000637871 FAM229AH3BQW9 127 aa10.85□□□□□ -0.67
CLN3-263ENST00000637871 ASB16-AS1Q495Z4 193 aa10.85□□□□□ -0.67
CLN3-263ENST00000637871 ANAPC11Q9NYG5 84 aa10.85□□□□□ -0.67
CLN3-263ENST00000637871 KRTAP10-4P60372 401 aaPredicted RBP10.84□□□□□ -0.67
CLN3-263ENST00000637871 ABCA13Q86UQ4 5058 aa10.84□□□□□ -0.67
CLN3-263ENST00000637871 MP68P56378 58 aa10.84□□□□□ -0.67
CLN3-263ENST00000637871 HRCT1Q6UXD1 115 aa10.84□□□□□ -0.67
CLN3-263ENST00000637871 MMP24-AS1A0A0U1RRL7 71 aa10.81□□□□□ -0.68
CLN3-263ENST00000637871 hDV103S1A0JD37 113 aa10.8□□□□□ -0.68
CLN3-263ENST00000637871 A0A1B0GVX0 72 aa10.8□□□□□ -0.68
CLN3-263ENST00000637871 ZCCHC13Q8WW36 166 aaKnown RBP10.8□□□□□ -0.68
CLN3-263ENST00000637871 TP53AIP1Q9HCN2 124 aa10.8□□□□□ -0.68
CLN3-263ENST00000637871 SERP1Q9Y6X1 66 aa10.8□□□□□ -0.68
CLN3-263ENST00000637871 PLA2G1BP04054 148 aaKnown RBP10.79□□□□□ -0.68
CLN3-263ENST00000637871 Q5XG85 94 aa10.79□□□□□ -0.68
CLN3-263ENST00000637871 C8orf17Q9NRJ1 99 aa10.78□□□□□ -0.68
CLN3-263ENST00000637871 PKHD1L1Q86WI1 4243 aa10.78□□□□□ -0.68
CLN3-263ENST00000637871 SPINK6Q6UWN8 80 aa10.71□□□□□ -0.69
CLN3-263ENST00000637871 C8orf87E5RJ46 101 aa10.7□□□□□ -0.7
CLN3-263ENST00000637871 IGHV6-1A0A0B4J1U7 121 aa10.69□□□□□ -0.7
CLN3-263ENST00000637871 H0Y9P7 68 aa10.69□□□□□ -0.7
CLN3-263ENST00000637871 LIMD2Q9BT23 127 aa10.69□□□□□ -0.7
CLN3-263ENST00000637871 PCLOQ9Y6V0 5065 aa10.69□□□□□ -0.7
CLN3-263ENST00000637871 KRTAP1-4P0C5Y4 121 aa10.69□□□□□ -0.7
CLN3-263ENST00000637871 KRTAP13-2Q52LG2 175 aa10.69□□□□□ -0.7
CLN3-263ENST00000637871 MYCBP2O75592 4640 aa10.68□□□□□ -0.7
CLN3-263ENST00000637871 MRPL34Q9BQ48 92 aaKnown RBP10.68□□□□□ -0.7
CLN3-263ENST00000637871 FLG2Q5D862 2391 aaPredicted RBP10.67□□□□□ -0.7
CLN3-263ENST00000637871 A0A087X002 238 aa10.67□□□□□ -0.7
CLN3-263ENST00000637871 TRAV22A0A0B4J277 110 aa10.67□□□□□ -0.7
CLN3-263ENST00000637871 LINC00208Q96KT6 92 aa10.66□□□□□ -0.7
CLN3-263ENST00000637871 LRP1Q07954 4544 aaKnown RBP10.63□□□□□ -0.71
CLN3-263ENST00000637871 C4orf48Q5BLP8 95 aa10.63□□□□□ -0.71
CLN3-263ENST00000637871 SPANXA2-OT1Q8N9U9 137 aa10.61□□□□□ -0.71
CLN3-263ENST00000637871 C1orf64Q8NEQ6 169 aa10.61□□□□□ -0.71
CLN3-263ENST00000637871 FAT3Q8TDW7 4589 aa10.6□□□□□ -0.71
CLN3-263ENST00000637871 SPINK1P00995 79 aa10.6□□□□□ -0.71
CLN3-263ENST00000637871 CYP4F30PQ9H0H9 118 aa10.6□□□□□ -0.71
CLN3-263ENST00000637871 TYMSOSQ8TAI1 123 aa10.59□□□□□ -0.71
CLN3-263ENST00000637871 SMIM26A0A096LP01 95 aa10.58□□□□□ -0.72
CLN3-263ENST00000637871 RPS29P62273 56 aaKnown RBP10.58□□□□□ -0.72
CLN3-263ENST00000637871 SPAG11AQ6PDA7 123 aa10.58□□□□□ -0.72
CLN3-263ENST00000637871 OXTP01178 125 aa10.58□□□□□ -0.72
CLN3-263ENST00000637871 C1orf195Q5TG92 126 aa10.57□□□□□ -0.72
CLN3-263ENST00000637871 NDUFS5O43920 106 aa10.56□□□□□ -0.72
CLN3-263ENST00000637871 LINC00313P59037 77 aa10.54□□□□□ -0.72
CLN3-263ENST00000637871 NOTCH2NLQ7Z3S9 236 aa10.51□□□□□ -0.73
CLN3-263ENST00000637871 LOC101927531A0A1B0GV80 90 aa10.47□□□□□ -0.73
CLN3-263ENST00000637871 LINC00304Q8N9R0 145 aa10.47□□□□□ -0.73
CLN3-263ENST00000637871 Q8N9P0 234 aaPredicted RBP10.46□□□□□ -0.74
CLN3-263ENST00000637871 TNXBP22105 4242 aa10.45□□□□□ -0.74
CLN3-263ENST00000637871 IGLV7-46A0A075B6I9 117 aa10.44□□□□□ -0.74
CLN3-263ENST00000637871 PRR26Q8N8Z3 221 aa10.43□□□□□ -0.74
CLN3-263ENST00000637871 MT1HL1P0DM35 61 aa10.4□□□□□ -0.75
CLN3-263ENST00000637871 KRTAP13-3Q3SY46 172 aa10.39□□□□□ -0.75
CLN3-263ENST00000637871 J3QL48 77 aa10.36□□□□□ -0.75
CLN3-263ENST00000637871 DMBT1Q9UGM3 2413 aaPredicted RBP10.36□□□□□ -0.75
CLN3-263ENST00000637871 FP248Q71RG6 208 aaPredicted RBP10.36□□□□□ -0.75
CLN3-263ENST00000637871 KRTAP16-1A8MUX0 517 aa10.35□□□□□ -0.75
CLN3-263ENST00000637871 KRTAP10-8P60410 259 aa10.33□□□□□ -0.76
CLN3-263ENST00000637871 Q5W150 140 aa10.33□□□□□ -0.76
CLN3-263ENST00000637871 PRR4Q16378 134 aa10.33□□□□□ -0.76
CLN3-263ENST00000637871 PCOTHQ58A44 107 aa10.32□□□□□ -0.76
CLN3-263ENST00000637871 V9GYY9 64 aa10.29□□□□□ -0.76
CLN3-263ENST00000637871 HERC1Q15751 4861 aa10.29□□□□□ -0.76
CLN3-263ENST00000637871 C4orf26Q17RF5 130 aa10.29□□□□□ -0.76
CLN3-263ENST00000637871 Q1T7F1 81 aa10.27□□□□□ -0.77
CLN3-263ENST00000637871 IGKV2-30P06310 120 aa10.24□□□□□ -0.77
CLN3-263ENST00000637871 COA5Q86WW8 74 aa10.2□□□□□ -0.78
CLN3-263ENST00000637871 MPLKIPQ8TAP9 179 aa10.19□□□□□ -0.78
CLN3-263ENST00000637871 ACYP2P14621 99 aa10.15□□□□□ -0.78
CLN3-263ENST00000637871 HRES1P13985 223 aa10.12□□□□□ -0.79
CLN3-263ENST00000637871 C20orf166-AS1Q96NR2 134 aa10.11□□□□□ -0.79
CLN3-263ENST00000637871 DMAC1Q96GE9 116 aa10.1□□□□□ -0.79
CLN3-263ENST00000637871 A8MUU9 505 aa10.09□□□□□ -0.79
CLN3-263ENST00000637871 SVIPQ8NHG7 77 aa10.08□□□□□ -0.8
CLN3-263ENST00000637871 RETNLBQ9BQ08 111 aa10.08□□□□□ -0.8
CLN3-263ENST00000637871 C7orf65Q6ZTY9 151 aa10.06□□□□□ -0.8
CLN3-263ENST00000637871 IGKV2D-30A0A075B6S6 120 aa10.04□□□□□ -0.8
CLN3-263ENST00000637871 HMCN2Q8NDA2 5059 aa10.03□□□□□ -0.8
CLN3-263ENST00000637871 LINC01558Q9Y6Z2 57 aa9.99□□□□□ -0.81
CLN3-263ENST00000637871 A8MUN3 132 aa9.97□□□□□ -0.81
CLN3-263ENST00000637871 Q75L30 129 aa9.97□□□□□ -0.81
CLN3-263ENST00000637871 C9orf92A6NGG3 77 aa9.96□□□□□ -0.81
CLN3-263ENST00000637871 CHKB-CPT1BH3BT56 60 aa9.96□□□□□ -0.81
CLN3-263ENST00000637871 PRO0628Q9UI54 55 aa9.94□□□□□ -0.82
CLN3-263ENST00000637871 PSPHP1O15172 72 aa9.93□□□□□ -0.82
CLN3-263ENST00000637871 LPAP08519 4548 aa9.9□□□□□ -0.82
CLN3-263ENST00000637871 Q5VV11 94 aa9.89□□□□□ -0.83
CLN3-263ENST00000637871 PRR15LQ9BU68 103 aa9.89□□□□□ -0.83
CLN3-263ENST00000637871 BRK1Q8WUW1 75 aa9.87□□□□□ -0.83
CLN3-263ENST00000637871 LRP2P98164 4655 aa9.84□□□□□ -0.83
CLN3-263ENST00000637871 ATP11AUNQ6ZP68 121 aa9.8□□□□□ -0.84
CLN3-263ENST00000637871 SPINK7P58062 85 aa9.79□□□□□ -0.84
CLN3-263ENST00000637871 SPTSSBQ8NFR3 76 aa9.78□□□□□ -0.84
CLN3-263ENST00000637871 RPL37P61927 97 aaKnown RBP9.75□□□□□ -0.85
CLN3-263ENST00000637871 A6NED7 52 aa9.7□□□□□ -0.86
CLN3-263ENST00000637871 UBR4Q5T4S7 5183 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms