RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 SIGMAR1Q99720 223 aa5.5□□□□□ -1.53
CLN3-261ENST00000637686 BPY2O14599 106 aa5.49□□□□□ -1.53
CLN3-261ENST00000637686 A8MWP4 228 aa5.47□□□□□ -1.53
CLN3-261ENST00000637686 NDUFB1O75438 58 aa5.46□□□□□ -1.54
CLN3-261ENST00000637686 IGKV4-1P06312 121 aa5.46□□□□□ -1.54
CLN3-261ENST00000637686 DSCR10P59022 87 aa5.46□□□□□ -1.54
CLN3-261ENST00000637686 IMUPQ9GZP8 106 aa5.46□□□□□ -1.54
CLN3-261ENST00000637686 RNF213Q63HN8 5207 aa5.46□□□□□ -1.54
CLN3-261ENST00000637686 PRR15Q8IV56 129 aa5.44□□□□□ -1.54
CLN3-261ENST00000637686 MUC17Q685J3 4493 aa5.44□□□□□ -1.54
CLN3-261ENST00000637686 IGKV3D-7A0A0C4DH55 119 aa5.42□□□□□ -1.54
CLN3-261ENST00000637686 A0A1B0GVX0 72 aa5.42□□□□□ -1.54
CLN3-261ENST00000637686 C8orf87E5RJ46 101 aa5.42□□□□□ -1.54
CLN3-261ENST00000637686 C9orf92A6NGG3 77 aa5.41□□□□□ -1.54
CLN3-261ENST00000637686 DEFB116Q30KQ4 102 aa5.41□□□□□ -1.54
CLN3-261ENST00000637686 K7EQZ3 153 aa5.4□□□□□ -1.54
CLN3-261ENST00000637686 XP32Q5T750 250 aa5.4□□□□□ -1.54
CLN3-261ENST00000637686 MT-ATP8P03928 68 aa5.39□□□□□ -1.55
CLN3-261ENST00000637686 MUC2Q02817 5179 aa5.38□□□□□ -1.55
CLN3-261ENST00000637686 KRTAP9-6A0A140TA67 174 aa5.38□□□□□ -1.55
CLN3-261ENST00000637686 SEC61BP60468 96 aaKnown RBP5.37□□□□□ -1.55
CLN3-261ENST00000637686 C8orf17Q9NRJ1 99 aa5.37□□□□□ -1.55
CLN3-261ENST00000637686 IGHV6-1A0A0B4J1U7 121 aa5.36□□□□□ -1.55
CLN3-261ENST00000637686 HCG22E2RYF7 251 aa5.36□□□□□ -1.55
CLN3-261ENST00000637686 LINC00313P59037 77 aa5.36□□□□□ -1.55
CLN3-261ENST00000637686 HIST1H4AP62805 103 aaKnown RBP5.36□□□□□ -1.55
CLN3-261ENST00000637686 MMP24-AS1A0A0U1RRL7 71 aa5.35□□□□□ -1.55
CLN3-261ENST00000637686 Q8N9L7 120 aa5.35□□□□□ -1.55
CLN3-261ENST00000637686 TMEM254Q8TBM7 123 aa5.35□□□□□ -1.55
CLN3-261ENST00000637686 hDV103S1A0JD37 113 aa5.33□□□□□ -1.56
CLN3-261ENST00000637686 KRTAP16-1A8MUX0 517 aa5.32□□□□□ -1.56
CLN3-261ENST00000637686 CASC2Q6XLA1 102 aa5.32□□□□□ -1.56
CLN3-261ENST00000637686 KRTAP4-1Q9BYQ7 146 aa5.32□□□□□ -1.56
CLN3-261ENST00000637686 A0A0U1RQV1 116 aa5.31□□□□□ -1.56
CLN3-261ENST00000637686 PCOTHQ58A44 107 aa5.31□□□□□ -1.56
CLN3-261ENST00000637686 NOTCH2NLQ7Z3S9 236 aa5.31□□□□□ -1.56
CLN3-261ENST00000637686 Q8N9P0 234 aaPredicted RBP5.31□□□□□ -1.56
CLN3-261ENST00000637686 MRPL34Q9BQ48 92 aaKnown RBP5.31□□□□□ -1.56
CLN3-261ENST00000637686 A0A087WVE0 104 aa5.3□□□□□ -1.56
CLN3-261ENST00000637686 C20orf166-AS1Q96NR2 134 aa5.3□□□□□ -1.56
CLN3-261ENST00000637686 KRTAP9-2Q9BYQ4 174 aa5.3□□□□□ -1.56
CLN3-261ENST00000637686 SCGB1A1P11684 91 aa5.29□□□□□ -1.56
CLN3-261ENST00000637686 RPL37P61927 97 aaKnown RBP5.29□□□□□ -1.56
CLN3-261ENST00000637686 A8MUU9 505 aa5.28□□□□□ -1.56
CLN3-261ENST00000637686 Q75L30 129 aa5.28□□□□□ -1.56
CLN3-261ENST00000637686 WFDC13Q8IUB5 93 aa5.28□□□□□ -1.56
CLN3-261ENST00000637686 TP53AIP1Q9HCN2 124 aa5.28□□□□□ -1.56
CLN3-261ENST00000637686 FAM236AA0A1B0GUQ0 79 aa5.27□□□□□ -1.57
CLN3-261ENST00000637686 FAM236BA0A1B0GV22 79 aa5.27□□□□□ -1.57
CLN3-261ENST00000637686 SMIM20Q8N5G0 67 aa5.27□□□□□ -1.57
CLN3-261ENST00000637686 ATOX1O00244 68 aa5.25□□□□□ -1.57
CLN3-261ENST00000637686 OCR1Q9BZK8 76 aa5.24□□□□□ -1.57
CLN3-261ENST00000637686 UQCRQO14949 82 aa5.23□□□□□ -1.57
CLN3-261ENST00000637686 FAT4Q6V0I7 4981 aa5.23□□□□□ -1.57
CLN3-261ENST00000637686 TRAV7A0A075B6U4 112 aa5.21□□□□□ -1.58
CLN3-261ENST00000637686 NDUFS5O43920 106 aa5.2□□□□□ -1.58
CLN3-261ENST00000637686 ATP11AUNQ6ZP68 121 aa5.2□□□□□ -1.58
CLN3-261ENST00000637686 LCE2AQ5TA79 106 aaPredicted RBP5.19□□□□□ -1.58
CLN3-261ENST00000637686 ZCCHC13Q8WW36 166 aaKnown RBP5.19□□□□□ -1.58
CLN3-261ENST00000637686 C5orf47Q569G3 176 aa5.18□□□□□ -1.58
CLN3-261ENST00000637686 SERP2Q8N6R1 65 aa5.18□□□□□ -1.58
CLN3-261ENST00000637686 TRAV22A0A0B4J277 110 aa5.17□□□□□ -1.58
CLN3-261ENST00000637686 H3BPC8 53 aa5.17□□□□□ -1.58
CLN3-261ENST00000637686 KRTAP19-2Q3LHN2 52 aa5.15□□□□□ -1.59
CLN3-261ENST00000637686 LCE2CQ5TA81 110 aa5.15□□□□□ -1.59
CLN3-261ENST00000637686 MP68P56378 58 aa5.14□□□□□ -1.59
CLN3-261ENST00000637686 Q5W150 140 aa5.13□□□□□ -1.59
CLN3-261ENST00000637686 H0Y9P7 68 aa5.12□□□□□ -1.59
CLN3-261ENST00000637686 COX7CP15954 63 aa5.12□□□□□ -1.59
CLN3-261ENST00000637686 ANAPC13Q9BS18 74 aa5.12□□□□□ -1.59
CLN3-261ENST00000637686 LOC101927531A0A1B0GV80 90 aa5.11□□□□□ -1.59
CLN3-261ENST00000637686 LCE2DQ5TA82 110 aaPredicted RBP5.11□□□□□ -1.59
CLN3-261ENST00000637686 IGKV2-30P06310 120 aa5.09□□□□□ -1.59
CLN3-261ENST00000637686 C7orf65Q6ZTY9 151 aa5.09□□□□□ -1.59
CLN3-261ENST00000637686 KRTAP3-3Q9BYR6 98 aa5.09□□□□□ -1.59
CLN3-261ENST00000637686 KRTAP3-2Q9BYR7 98 aa5.09□□□□□ -1.59
CLN3-261ENST00000637686 KLKP1Q107X0 134 aa5.08□□□□□ -1.6
CLN3-261ENST00000637686 COX6B2Q6YFQ2 88 aa5.08□□□□□ -1.6
CLN3-261ENST00000637686 MT1HP80294 61 aa5.07□□□□□ -1.6
CLN3-261ENST00000637686 C1orf64Q8NEQ6 169 aa5.07□□□□□ -1.6
CLN3-261ENST00000637686 LINC00208Q96KT6 92 aa5.06□□□□□ -1.6
CLN3-261ENST00000637686 CYP4F30PQ9H0H9 118 aa5.06□□□□□ -1.6
CLN3-261ENST00000637686 SPINK7P58062 85 aa5.05□□□□□ -1.6
CLN3-261ENST00000637686 NDUFC1O43677 76 aa5.04□□□□□ -1.6
CLN3-261ENST00000637686 C20orf197Q8N268 126 aa5.04□□□□□ -1.6
CLN3-261ENST00000637686 IGKV2D-30A0A075B6S6 120 aa5.02□□□□□ -1.61
CLN3-261ENST00000637686 M0R2T5 61 aa5□□□□□ -1.61
CLN3-261ENST00000637686 HRES1P13985 223 aa5□□□□□ -1.61
CLN3-261ENST00000637686 FLGP20930 4061 aaPredicted RBP5□□□□□ -1.61
CLN3-261ENST00000637686 SNURFQ9Y675 71 aa4.99□□□□□ -1.61
CLN3-261ENST00000637686 CCDC179H3BU77 68 aa4.98□□□□□ -1.61
CLN3-261ENST00000637686 MPLKIPQ8TAP9 179 aa4.98□□□□□ -1.61
CLN3-261ENST00000637686 FAM236DA0A1B0GTK5 79 aa4.97□□□□□ -1.61
CLN3-261ENST00000637686 FAM236CP0DP71 79 aa4.97□□□□□ -1.61
CLN3-261ENST00000637686 SPANXA2-OT1Q8N9U9 137 aa4.97□□□□□ -1.61
CLN3-261ENST00000637686 RBM12B-AS1Q9P1G2 102 aa4.97□□□□□ -1.61
CLN3-261ENST00000637686 PCP4P48539 62 aa4.96□□□□□ -1.62
CLN3-261ENST00000637686 KRTAP10-6P60371 365 aaPredicted RBP4.96□□□□□ -1.62
CLN3-261ENST00000637686 H7BZZ5 65 aa4.95□□□□□ -1.62
CLN3-261ENST00000637686 A8MUN3 132 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms