RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 A0A1B0GV72 72 aa8.08□□□□□ -1.12
CLN3-246ENST00000636228 TMEM256-PLSCR3K7ERE1 68 aa8.08□□□□□ -1.12
CLN3-246ENST00000636228 LINC00313P59037 77 aa8.08□□□□□ -1.12
CLN3-246ENST00000636228 NOTCH2NLQ7Z3S9 236 aa8.08□□□□□ -1.12
CLN3-246ENST00000636228 IGKV4-1P06312 121 aa8.07□□□□□ -1.12
CLN3-246ENST00000636228 DEFB116Q30KQ4 102 aa8.07□□□□□ -1.12
CLN3-246ENST00000636228 MT1FP04733 61 aa8.06□□□□□ -1.12
CLN3-246ENST00000636228 BAALC-AS2P0C853 105 aa8.06□□□□□ -1.12
CLN3-246ENST00000636228 LCE2BO14633 110 aa8.05□□□□□ -1.12
CLN3-246ENST00000636228 HRES1P13985 223 aa8.05□□□□□ -1.12
CLN3-246ENST00000636228 UBE2V1Q13404 147 aa8.05□□□□□ -1.12
CLN3-246ENST00000636228 C9JAW5 83 aa8.04□□□□□ -1.12
CLN3-246ENST00000636228 K7EP34 96 aa8.04□□□□□ -1.12
CLN3-246ENST00000636228 ANKRD29Q8N6D5 301 aa8.03□□□□□ -1.12
CLN3-246ENST00000636228 MPLKIPQ8TAP9 179 aa8.03□□□□□ -1.12
CLN3-246ENST00000636228 KRTAP19-1Q8IUB9 90 aa8.02□□□□□ -1.13
CLN3-246ENST00000636228 H3BT86 120 aa8.01□□□□□ -1.13
CLN3-246ENST00000636228 KRTAP10-10P60014 251 aa8.01□□□□□ -1.13
CLN3-246ENST00000636228 KRTAP9-3Q9BYQ3 159 aa8.01□□□□□ -1.13
CLN3-246ENST00000636228 RBM12B-AS1Q9P1G2 102 aa8.01□□□□□ -1.13
CLN3-246ENST00000636228 TRBV7-4A0A0J9YYF1 115 aa8□□□□□ -1.13
CLN3-246ENST00000636228 MTURNQ8N3F0 131 aa8□□□□□ -1.13
CLN3-246ENST00000636228 IGHV6-1A0A0B4J1U7 121 aa7.99□□□□□ -1.13
CLN3-246ENST00000636228 GTF2H5Q6ZYL4 71 aa7.98□□□□□ -1.13
CLN3-246ENST00000636228 LINC00472Q9H8W2 130 aa7.98□□□□□ -1.13
CLN3-246ENST00000636228 PRO0461Q9UI25 63 aa7.98□□□□□ -1.13
CLN3-246ENST00000636228 SMCPP49901 116 aaPredicted RBP7.96□□□□□ -1.14
CLN3-246ENST00000636228 JMJD7-PLA2G4BH0Y9G9 81 aa7.94□□□□□ -1.14
CLN3-246ENST00000636228 CCKP06307 115 aa7.94□□□□□ -1.14
CLN3-246ENST00000636228 RBM3P98179 157 aaKnown RBP7.94□□□□□ -1.14
CLN3-246ENST00000636228 A0A1B0GV90 55 aa7.92□□□□□ -1.14
CLN3-246ENST00000636228 DSCR8Q96T75 97 aa7.91□□□□□ -1.14
CLN3-246ENST00000636228 VPS25Q9BRG1 176 aa7.9□□□□□ -1.14
CLN3-246ENST00000636228 LOC110117498A0A087WWA1 95 aa7.89□□□□□ -1.15
CLN3-246ENST00000636228 F8W1H4 67 aa7.89□□□□□ -1.15
CLN3-246ENST00000636228 A0A1B0GVX0 72 aa7.88□□□□□ -1.15
CLN3-246ENST00000636228 Q6ZQT0 140 aa7.88□□□□□ -1.15
CLN3-246ENST00000636228 C14orf132Q9NPU4 83 aa7.88□□□□□ -1.15
CLN3-246ENST00000636228 C8orf87E5RJ46 101 aa7.86□□□□□ -1.15
CLN3-246ENST00000636228 PDE6GP18545 87 aa7.86□□□□□ -1.15
CLN3-246ENST00000636228 MACF1Q9UPN3 7388 aaKnown RBP7.85□□□□□ -1.15
CLN3-246ENST00000636228 SPINK7P58062 85 aa7.85□□□□□ -1.15
CLN3-246ENST00000636228 ZCCHC13Q8WW36 166 aaKnown RBP7.85□□□□□ -1.15
CLN3-246ENST00000636228 C21orf62-AS1Q17RA5 79 aa7.82□□□□□ -1.16
CLN3-246ENST00000636228 SYNE2Q8WXH0 6885 aaKnown RBP7.82□□□□□ -1.16
CLN3-246ENST00000636228 ETDBQ3ZM63 59 aa7.81□□□□□ -1.16
CLN3-246ENST00000636228 A0A1B0GW54 56 aa7.8□□□□□ -1.16
CLN3-246ENST00000636228 J3KT08 172 aa7.75□□□□□ -1.17
CLN3-246ENST00000636228 KRTAP19-6Q3LI70 58 aa7.75□□□□□ -1.17
CLN3-246ENST00000636228 WFDC13Q8IUB5 93 aa7.75□□□□□ -1.17
CLN3-246ENST00000636228 Q8N9P0 234 aaPredicted RBP7.75□□□□□ -1.17
CLN3-246ENST00000636228 A8MWP4 228 aa7.72□□□□□ -1.17
CLN3-246ENST00000636228 LINC00846Q9NV44 126 aa7.72□□□□□ -1.17
CLN3-246ENST00000636228 NDUFB1O75438 58 aa7.71□□□□□ -1.18
CLN3-246ENST00000636228 C8orf17Q9NRJ1 99 aa7.71□□□□□ -1.18
CLN3-246ENST00000636228 IGKV3D-7A0A0C4DH55 119 aa7.68□□□□□ -1.18
CLN3-246ENST00000636228 NREPQ16612 68 aa7.65□□□□□ -1.18
CLN3-246ENST00000636228 Q6ZVQ6 151 aa7.64□□□□□ -1.19
CLN3-246ENST00000636228 FAM240AA0A1B0GVK7 77 aa7.61□□□□□ -1.19
CLN3-246ENST00000636228 UBL5Q9BZL1 73 aa7.6□□□□□ -1.19
CLN3-246ENST00000636228 ACYP1P07311 99 aa7.59□□□□□ -1.19
CLN3-246ENST00000636228 PRR15Q8IV56 129 aa7.59□□□□□ -1.19
CLN3-246ENST00000636228 H1FX-AS1Q4G0G2 97 aa7.58□□□□□ -1.2
CLN3-246ENST00000636228 MMP24-AS1A0A0U1RRL7 71 aa7.56□□□□□ -1.2
CLN3-246ENST00000636228 BPY2O14599 106 aa7.56□□□□□ -1.2
CLN3-246ENST00000636228 KRTAP6-3Q3LI67 103 aa7.55□□□□□ -1.2
CLN3-246ENST00000636228 MRPL34Q9BQ48 92 aaKnown RBP7.55□□□□□ -1.2
CLN3-246ENST00000636228 TMEM254Q8TBM7 123 aa7.54□□□□□ -1.2
CLN3-246ENST00000636228 J3QR89 54 aa7.53□□□□□ -1.2
CLN3-246ENST00000636228 NDUFS5O43920 106 aa7.53□□□□□ -1.2
CLN3-246ENST00000636228 K7EQZ3 153 aa7.52□□□□□ -1.21
CLN3-246ENST00000636228 IGKV2D-30A0A075B6S6 120 aa7.5□□□□□ -1.21
CLN3-246ENST00000636228 hDV103S1A0JD37 113 aa7.5□□□□□ -1.21
CLN3-246ENST00000636228 IGKV2-30P06310 120 aa7.5□□□□□ -1.21
CLN3-246ENST00000636228 CXCL6P80162 114 aa7.49□□□□□ -1.21
CLN3-246ENST00000636228 Q8N9L7 120 aa7.48□□□□□ -1.21
CLN3-246ENST00000636228 Q5W150 140 aa7.47□□□□□ -1.21
CLN3-246ENST00000636228 ATP5EP2Q5VTU8 51 aa7.45□□□□□ -1.22
CLN3-246ENST00000636228 K7ERU9 68 aa7.44□□□□□ -1.22
CLN3-246ENST00000636228 LINC00643Q86TS7 51 aa7.43□□□□□ -1.22
CLN3-246ENST00000636228 C7orf65Q6ZTY9 151 aa7.42□□□□□ -1.22
CLN3-246ENST00000636228 C4orf26Q17RF5 130 aa7.41□□□□□ -1.22
CLN3-246ENST00000636228 C5orf47Q569G3 176 aa7.38□□□□□ -1.23
CLN3-246ENST00000636228 HCG22E2RYF7 251 aa7.37□□□□□ -1.23
CLN3-246ENST00000636228 CASC2Q6XLA1 102 aa7.36□□□□□ -1.23
CLN3-246ENST00000636228 MUC12Q9UKN1 5478 aa7.35□□□□□ -1.23
CLN3-246ENST00000636228 NEBP20929 6669 aa7.35□□□□□ -1.23
CLN3-246ENST00000636228 FAM236AA0A1B0GUQ0 79 aa7.33□□□□□ -1.24
CLN3-246ENST00000636228 FAM236BA0A1B0GV22 79 aa7.33□□□□□ -1.24
CLN3-246ENST00000636228 A6NN06 94 aa7.33□□□□□ -1.24
CLN3-246ENST00000636228 MT1BP07438 61 aa7.32□□□□□ -1.24
CLN3-246ENST00000636228 HIST1H4AP62805 103 aaKnown RBP7.32□□□□□ -1.24
CLN3-246ENST00000636228 KRTAP3-1Q9BYR8 98 aa7.3□□□□□ -1.24
CLN3-246ENST00000636228 A0A087WVE0 104 aa7.28□□□□□ -1.24
CLN3-246ENST00000636228 Q5VV11 94 aa7.27□□□□□ -1.25
CLN3-246ENST00000636228 MT-ATP8P03928 68 aa7.26□□□□□ -1.25
CLN3-246ENST00000636228 S4R3F8 94 aa7.25□□□□□ -1.25
CLN3-246ENST00000636228 KRTAP19-8Q3LI54 63 aa7.23□□□□□ -1.25
CLN3-246ENST00000636228 IMUPQ9GZP8 106 aa7.23□□□□□ -1.25
CLN3-246ENST00000636228 CSAG1Q6PB30 78 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms