RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 H3BPC8 53 aa8.44□□□□□ -1.06
CLN3-242ENST00000635958 IGFL1Q6UW32 110 aa8.43□□□□□ -1.06
CLN3-242ENST00000635958 KRTAP1-4P0C5Y4 121 aa8.43□□□□□ -1.06
CLN3-242ENST00000635958 K7EQZ3 153 aa8.42□□□□□ -1.06
CLN3-242ENST00000635958 CYP4F30PQ9H0H9 118 aa8.42□□□□□ -1.06
CLN3-242ENST00000635958 MP68P56378 58 aa8.4□□□□□ -1.06
CLN3-242ENST00000635958 FAM229BQ4G0N7 80 aa8.4□□□□□ -1.06
CLN3-242ENST00000635958 ANAPC11Q9NYG5 84 aa8.4□□□□□ -1.06
CLN3-242ENST00000635958 hDV103S1A0JD37 113 aa8.39□□□□□ -1.07
CLN3-242ENST00000635958 PKHD1L1Q86WI1 4243 aa8.38□□□□□ -1.07
CLN3-242ENST00000635958 A0A087X002 238 aa8.35□□□□□ -1.07
CLN3-242ENST00000635958 Q1T7F1 81 aa8.35□□□□□ -1.07
CLN3-242ENST00000635958 V9GYY9 64 aa8.35□□□□□ -1.07
CLN3-242ENST00000635958 A0A087WSZ3 146 aa8.34□□□□□ -1.07
CLN3-242ENST00000635958 IGLV9-49A0A0B4J1Y8 123 aa8.33□□□□□ -1.08
CLN3-242ENST00000635958 SPANXA2-OT1Q8N9U9 137 aa8.33□□□□□ -1.08
CLN3-242ENST00000635958 KRTAP29-1A8MX34 341 aaPredicted RBP8.33□□□□□ -1.08
CLN3-242ENST00000635958 KRTAP13-2Q52LG2 175 aa8.33□□□□□ -1.08
CLN3-242ENST00000635958 SSBP3-AS1Q7Z2R9 100 aa8.32□□□□□ -1.08
CLN3-242ENST00000635958 PRR15Q8IV56 129 aa8.32□□□□□ -1.08
CLN3-242ENST00000635958 A8MWP4 228 aa8.31□□□□□ -1.08
CLN3-242ENST00000635958 C1orf64Q8NEQ6 169 aa8.31□□□□□ -1.08
CLN3-242ENST00000635958 MOBPQ13875 183 aa8.31□□□□□ -1.08
CLN3-242ENST00000635958 TRAV22A0A0B4J277 110 aa8.3□□□□□ -1.08
CLN3-242ENST00000635958 CASC2Q6XLA1 102 aa8.3□□□□□ -1.08
CLN3-242ENST00000635958 MPLKIPQ8TAP9 179 aa8.3□□□□□ -1.08
CLN3-242ENST00000635958 LINC00472Q9H8W2 130 aa8.29□□□□□ -1.08
CLN3-242ENST00000635958 WFDC13Q8IUB5 93 aa8.28□□□□□ -1.08
CLN3-242ENST00000635958 PRR26Q8N8Z3 221 aa8.28□□□□□ -1.08
CLN3-242ENST00000635958 A0A0G2JQZ4 141 aa8.26□□□□□ -1.09
CLN3-242ENST00000635958 FLG2Q5D862 2391 aaPredicted RBP8.26□□□□□ -1.09
CLN3-242ENST00000635958 TYMSOSQ8TAI1 123 aa8.26□□□□□ -1.09
CLN3-242ENST00000635958 BRK1Q8WUW1 75 aa8.26□□□□□ -1.09
CLN3-242ENST00000635958 H0Y9P7 68 aa8.25□□□□□ -1.09
CLN3-242ENST00000635958 LRP1Q07954 4544 aaKnown RBP8.25□□□□□ -1.09
CLN3-242ENST00000635958 LINC00208Q96KT6 92 aa8.24□□□□□ -1.09
CLN3-242ENST00000635958 TP53AIP1Q9HCN2 124 aa8.24□□□□□ -1.09
CLN3-242ENST00000635958 CD164Q04900 197 aa8.23□□□□□ -1.09
CLN3-242ENST00000635958 FAT3Q8TDW7 4589 aa8.22□□□□□ -1.09
CLN3-242ENST00000635958 KRTAP10-8P60410 259 aa8.22□□□□□ -1.09
CLN3-242ENST00000635958 DEFB116Q30KQ4 102 aa8.22□□□□□ -1.09
CLN3-242ENST00000635958 MYCBP2O75592 4640 aa8.22□□□□□ -1.09
CLN3-242ENST00000635958 C1orf195Q5TG92 126 aa8.22□□□□□ -1.09
CLN3-242ENST00000635958 DMBT1Q9UGM3 2413 aaPredicted RBP8.19□□□□□ -1.1
CLN3-242ENST00000635958 HERC1Q15751 4861 aa8.18□□□□□ -1.1
CLN3-242ENST00000635958 SPAG11AQ6PDA7 123 aa8.17□□□□□ -1.1
CLN3-242ENST00000635958 LIMD2Q9BT23 127 aa8.17□□□□□ -1.1
CLN3-242ENST00000635958 TNXBP22105 4242 aa8.17□□□□□ -1.1
CLN3-242ENST00000635958 MMP24-AS1A0A0U1RRL7 71 aa8.17□□□□□ -1.1
CLN3-242ENST00000635958 ASB16-AS1Q495Z4 193 aa8.16□□□□□ -1.1
CLN3-242ENST00000635958 LINC00304Q8N9R0 145 aa8.16□□□□□ -1.1
CLN3-242ENST00000635958 SPINK1P00995 79 aa8.15□□□□□ -1.1
CLN3-242ENST00000635958 C4orf48Q5BLP8 95 aa8.15□□□□□ -1.1
CLN3-242ENST00000635958 MT1HL1P0DM35 61 aa8.15□□□□□ -1.11
CLN3-242ENST00000635958 IGLV7-46A0A075B6I9 117 aa8.14□□□□□ -1.11
CLN3-242ENST00000635958 RPS29P62273 56 aaKnown RBP8.13□□□□□ -1.11
CLN3-242ENST00000635958 PRR4Q16378 134 aa8.1□□□□□ -1.11
CLN3-242ENST00000635958 C8orf17Q9NRJ1 99 aa8.1□□□□□ -1.11
CLN3-242ENST00000635958 Q96NJ1 140 aa8.09□□□□□ -1.11
CLN3-242ENST00000635958 A0A1B0GVX0 72 aa8.08□□□□□ -1.12
CLN3-242ENST00000635958 Q8N9P0 234 aaPredicted RBP8.07□□□□□ -1.12
CLN3-242ENST00000635958 PSPHP1O15172 72 aa8.06□□□□□ -1.12
CLN3-242ENST00000635958 MRPL34Q9BQ48 92 aaKnown RBP8.03□□□□□ -1.12
CLN3-242ENST00000635958 LOC101927531A0A1B0GV80 90 aa8.03□□□□□ -1.12
CLN3-242ENST00000635958 A8MUN3 132 aa8.03□□□□□ -1.12
CLN3-242ENST00000635958 COA5Q86WW8 74 aa8.03□□□□□ -1.12
CLN3-242ENST00000635958 Q5VV11 94 aa8.02□□□□□ -1.13
CLN3-242ENST00000635958 J3QL48 77 aa8.01□□□□□ -1.13
CLN3-242ENST00000635958 Q75L30 129 aa8□□□□□ -1.13
CLN3-242ENST00000635958 IGHV6-1A0A0B4J1U7 121 aa7.97□□□□□ -1.13
CLN3-242ENST00000635958 UBR4Q5T4S7 5183 aa7.97□□□□□ -1.13
CLN3-242ENST00000635958 C8orf87E5RJ46 101 aa7.96□□□□□ -1.13
CLN3-242ENST00000635958 CHKB-CPT1BH3BT56 60 aa7.96□□□□□ -1.13
CLN3-242ENST00000635958 PRR15LQ9BU68 103 aa7.96□□□□□ -1.13
CLN3-242ENST00000635958 LINC01558Q9Y6Z2 57 aa7.96□□□□□ -1.13
CLN3-242ENST00000635958 NDUFS5O43920 106 aa7.96□□□□□ -1.14
CLN3-242ENST00000635958 PMAIP1Q13794 54 aa7.96□□□□□ -1.14
CLN3-242ENST00000635958 PCOTHQ58A44 107 aa7.94□□□□□ -1.14
CLN3-242ENST00000635958 ATP11AUNQ6ZP68 121 aa7.92□□□□□ -1.14
CLN3-242ENST00000635958 RETNLBQ9BQ08 111 aa7.9□□□□□ -1.14
CLN3-242ENST00000635958 HMCN2Q8NDA2 5059 aa7.87□□□□□ -1.15
CLN3-242ENST00000635958 A6NED7 52 aa7.87□□□□□ -1.15
CLN3-242ENST00000635958 CDC42SE1Q9NRR8 79 aa7.87□□□□□ -1.15
CLN3-242ENST00000635958 HRES1P13985 223 aa7.86□□□□□ -1.15
CLN3-242ENST00000635958 ACYP2P14621 99 aa7.85□□□□□ -1.15
CLN3-242ENST00000635958 KRTAP13-3Q3SY46 172 aa7.84□□□□□ -1.15
CLN3-242ENST00000635958 NOTCH2NLQ7Z3S9 236 aa7.81□□□□□ -1.16
CLN3-242ENST00000635958 LINC00313P59037 77 aa7.8□□□□□ -1.16
CLN3-242ENST00000635958 SEC61GP60059 68 aa7.79□□□□□ -1.16
CLN3-242ENST00000635958 LCA10Q71F78 164 aa7.79□□□□□ -1.16
CLN3-242ENST00000635958 Q5W150 140 aa7.76□□□□□ -1.17
CLN3-242ENST00000635958 KTN1-AS1Q86SY8 53 aa7.76□□□□□ -1.17
CLN3-242ENST00000635958 DMAC1Q96GE9 116 aa7.75□□□□□ -1.17
CLN3-242ENST00000635958 KRTAP16-1A8MUX0 517 aa7.74□□□□□ -1.17
CLN3-242ENST00000635958 SPTSSBQ8NFR3 76 aa7.73□□□□□ -1.17
CLN3-242ENST00000635958 TPRXLQ17RH7 258 aa7.73□□□□□ -1.17
CLN3-242ENST00000635958 C9orf92A6NGG3 77 aa7.72□□□□□ -1.17
CLN3-242ENST00000635958 A6NN06 94 aa7.71□□□□□ -1.18
CLN3-242ENST00000635958 IGKV2-30P06310 120 aa7.71□□□□□ -1.18
CLN3-242ENST00000635958 A8MU10 97 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms