RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 Q8N9P0 234 aaPredicted RBP7.52□□□□□ -1.21
LINC00540-203ENST00000631321 FBN3Q75N90 2809 aa7.52□□□□□ -1.21
LINC00540-203ENST00000631321 ALMS1Q8TCU4 4167 aa7.51□□□□□ -1.21
LINC00540-203ENST00000631321 NDUFS5O43920 106 aa7.51□□□□□ -1.21
LINC00540-203ENST00000631321 COA5Q86WW8 74 aa7.51□□□□□ -1.21
LINC00540-203ENST00000631321 DNAH5Q8TE73 4624 aa7.51□□□□□ -1.21
LINC00540-203ENST00000631321 PCOTHQ58A44 107 aa7.5□□□□□ -1.21
LINC00540-203ENST00000631321 A8MUN3 132 aa7.5□□□□□ -1.21
LINC00540-203ENST00000631321 SSBP3-AS1Q7Z2R9 100 aa7.5□□□□□ -1.21
LINC00540-203ENST00000631321 LIMD2Q9BT23 127 aa7.5□□□□□ -1.21
LINC00540-203ENST00000631321 Q5VV11 94 aa7.48□□□□□ -1.21
LINC00540-203ENST00000631321 TGP01266 2768 aa7.47□□□□□ -1.21
LINC00540-203ENST00000631321 KRTAP13-3Q3SY46 172 aa7.47□□□□□ -1.21
LINC00540-203ENST00000631321 DNHD1Q96M86 4753 aa7.46□□□□□ -1.21
LINC00540-203ENST00000631321 CIRBP-AS1Q8TBR5 109 aa7.46□□□□□ -1.22
LINC00540-203ENST00000631321 LY6G6CO95867 125 aa7.45□□□□□ -1.22
LINC00540-203ENST00000631321 LOC101927531A0A1B0GV80 90 aa7.44□□□□□ -1.22
LINC00540-203ENST00000631321 C8orf87E5RJ46 101 aa7.44□□□□□ -1.22
LINC00540-203ENST00000631321 SPINK6Q6UWN8 80 aa7.44□□□□□ -1.22
LINC00540-203ENST00000631321 KRTAP10-2P60368 255 aa7.43□□□□□ -1.22
LINC00540-203ENST00000631321 Q5W150 140 aa7.42□□□□□ -1.22
LINC00540-203ENST00000631321 Q6ZSA8 131 aa7.41□□□□□ -1.22
LINC00540-203ENST00000631321 PRR15LQ9BU68 103 aa7.4□□□□□ -1.22
LINC00540-203ENST00000631321 HRES1P13985 223 aa7.4□□□□□ -1.23
LINC00540-203ENST00000631321 Q75L30 129 aa7.39□□□□□ -1.23
LINC00540-203ENST00000631321 KRTAP13-2Q52LG2 175 aa7.38□□□□□ -1.23
LINC00540-203ENST00000631321 LINC01558Q9Y6Z2 57 aa7.38□□□□□ -1.23
LINC00540-203ENST00000631321 LRP1BQ9NZR2 4599 aa7.37□□□□□ -1.23
LINC00540-203ENST00000631321 CHKB-CPT1BH3BT56 60 aa7.37□□□□□ -1.23
LINC00540-203ENST00000631321 PKD1P98161 4303 aa7.36□□□□□ -1.23
LINC00540-203ENST00000631321 KRTAP10-1P60331 282 aa7.36□□□□□ -1.23
LINC00540-203ENST00000631321 FAT2Q9NYQ8 4349 aa7.35□□□□□ -1.23
LINC00540-203ENST00000631321 LINC00313P59037 77 aa7.35□□□□□ -1.23
LINC00540-203ENST00000631321 FAM229AH3BQW9 127 aa7.32□□□□□ -1.24
LINC00540-203ENST00000631321 SPAG11AQ6PDA7 123 aa7.32□□□□□ -1.24
LINC00540-203ENST00000631321 A8MU10 97 aa7.31□□□□□ -1.24
LINC00540-203ENST00000631321 KRTAP1-4P0C5Y4 121 aa7.31□□□□□ -1.24
LINC00540-203ENST00000631321 KRTAP16-1A8MUX0 517 aa7.29□□□□□ -1.24
LINC00540-203ENST00000631321 HYDINQ4G0P3 5121 aa7.28□□□□□ -1.24
LINC00540-203ENST00000631321 ACYP2P14621 99 aa7.28□□□□□ -1.24
LINC00540-203ENST00000631321 LCA10Q71F78 164 aa7.28□□□□□ -1.24
LINC00540-203ENST00000631321 DMAC1Q96GE9 116 aa7.28□□□□□ -1.24
LINC00540-203ENST00000631321 VPS13BQ7Z7G8 4022 aa7.28□□□□□ -1.24
LINC00540-203ENST00000631321 IGKV2-30P06310 120 aa7.27□□□□□ -1.25
LINC00540-203ENST00000631321 A6NED7 52 aa7.27□□□□□ -1.25
LINC00540-203ENST00000631321 CDC42SE1Q9NRR8 79 aa7.25□□□□□ -1.25
LINC00540-203ENST00000631321 PRR26Q8N8Z3 221 aa7.24□□□□□ -1.25
LINC00540-203ENST00000631321 PMAIP1Q13794 54 aa7.23□□□□□ -1.25
LINC00540-203ENST00000631321 ATP11AUNQ6ZP68 121 aa7.23□□□□□ -1.25
LINC00540-203ENST00000631321 RETNLBQ9BQ08 111 aa7.21□□□□□ -1.26
LINC00540-203ENST00000631321 SPINK1P00995 79 aa7.19□□□□□ -1.26
LINC00540-203ENST00000631321 PLA2G1BP04054 148 aaKnown RBP7.19□□□□□ -1.26
LINC00540-203ENST00000631321 SPINK7P58062 85 aa7.18□□□□□ -1.26
LINC00540-203ENST00000631321 C4orf48Q5BLP8 95 aa7.18□□□□□ -1.26
LINC00540-203ENST00000631321 TYMSOSQ8TAI1 123 aa7.18□□□□□ -1.26
LINC00540-203ENST00000631321 SACSQ9NZJ4 4579 aa7.18□□□□□ -1.26
LINC00540-203ENST00000631321 SPTSSBQ8NFR3 76 aa7.16□□□□□ -1.26
LINC00540-203ENST00000631321 RPS29P62273 56 aaKnown RBP7.14□□□□□ -1.27
LINC00540-203ENST00000631321 A6NN06 94 aa7.13□□□□□ -1.27
LINC00540-203ENST00000631321 IGKV2D-30A0A075B6S6 120 aa7.11□□□□□ -1.27
LINC00540-203ENST00000631321 PKHD1P08F94 4074 aa7.1□□□□□ -1.27
LINC00540-203ENST00000631321 LINC00304Q8N9R0 145 aa7.09□□□□□ -1.27
LINC00540-203ENST00000631321 KTN1-AS1Q86SY8 53 aa7.08□□□□□ -1.28
LINC00540-203ENST00000631321 DYNC1H1Q14204 4646 aaKnown RBP7.08□□□□□ -1.28
LINC00540-203ENST00000631321 KRTAP21-3Q3LHN1 58 aa7.07□□□□□ -1.28
LINC00540-203ENST00000631321 A0A1B0GU69 56 aa7.06□□□□□ -1.28
LINC00540-203ENST00000631321 PKHD1L1Q86WI1 4243 aa7.05□□□□□ -1.28
LINC00540-203ENST00000631321 C7orf65Q6ZTY9 151 aa7.05□□□□□ -1.28
LINC00540-203ENST00000631321 APOBP04114 4563 aaKnown RBP7.01□□□□□ -1.29
LINC00540-203ENST00000631321 SEC61GP60059 68 aa7.01□□□□□ -1.29
LINC00540-203ENST00000631321 SPATA8Q6RVD6 105 aa6.99□□□□□ -1.29
LINC00540-203ENST00000631321 KRTAP10-4P60372 401 aaPredicted RBP6.99□□□□□ -1.29
LINC00540-203ENST00000631321 A0A1B0GVY2 172 aa6.98□□□□□ -1.29
LINC00540-203ENST00000631321 C20orf166-AS1Q96NR2 134 aa6.98□□□□□ -1.29
LINC00540-203ENST00000631321 A8MUU9 505 aa6.97□□□□□ -1.29
LINC00540-203ENST00000631321 SMR3BP02814 79 aaPredicted RBP6.97□□□□□ -1.29
LINC00540-203ENST00000631321 FAT1Q14517 4588 aa6.96□□□□□ -1.29
LINC00540-203ENST00000631321 UQCR11O14957 56 aa6.95□□□□□ -1.3
LINC00540-203ENST00000631321 Q8N1X5 172 aa6.95□□□□□ -1.3
LINC00540-203ENST00000631321 MIR22HGQ0VDD5 57 aa6.92□□□□□ -1.3
LINC00540-203ENST00000631321 C9orf92A6NGG3 77 aa6.9□□□□□ -1.3
LINC00540-203ENST00000631321 RBM12B-AS1Q9P1G2 102 aa6.88□□□□□ -1.31
LINC00540-203ENST00000631321 RYR2Q92736 4967 aa6.87□□□□□ -1.31
LINC00540-203ENST00000631321 KRTAP3-1Q9BYR8 98 aa6.85□□□□□ -1.31
LINC00540-203ENST00000631321 FAT3Q8TDW7 4589 aa6.77□□□□□ -1.33
LINC00540-203ENST00000631321 FLG2Q5D862 2391 aaPredicted RBP6.77□□□□□ -1.33
LINC00540-203ENST00000631321 TNXBP22105 4242 aa6.76□□□□□ -1.33
LINC00540-203ENST00000631321 COX6B2Q6YFQ2 88 aa6.74□□□□□ -1.33
LINC00540-203ENST00000631321 PRAC1Q96KF2 57 aa6.73□□□□□ -1.33
LINC00540-203ENST00000631321 H0YAA0 97 aa6.72□□□□□ -1.33
LINC00540-203ENST00000631321 KRTAP10-8P60410 259 aa6.72□□□□□ -1.33
LINC00540-203ENST00000631321 ADM2Q7Z4H4 148 aa6.72□□□□□ -1.33
LINC00540-203ENST00000631321 KMT2CQ8NEZ4 4911 aaKnown RBP6.72□□□□□ -1.33
LINC00540-203ENST00000631321 A0A1B0GU33 70 aa6.69□□□□□ -1.34
LINC00540-203ENST00000631321 H1FX-AS1Q4G0G2 97 aa6.68□□□□□ -1.34
LINC00540-203ENST00000631321 LRP1Q07954 4544 aaKnown RBP6.68□□□□□ -1.34
LINC00540-203ENST00000631321 HSPG2P98160 4391 aa6.67□□□□□ -1.34
LINC00540-203ENST00000631321 RPL37P61927 97 aaKnown RBP6.64□□□□□ -1.35
LINC00540-203ENST00000631321 Q5VSD8 79 aa6.62□□□□□ -1.35
LINC00540-203ENST00000631321 RYR1P21817 5038 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms