RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 Q8N9P0 234 aaPredicted RBP7.52□□□□□ -1.21
LINC00540-203ENST00000631321 FBN3Q75N90 2809 aa7.52□□□□□ -1.21
LINC00540-203ENST00000631321 ALMS1Q8TCU4 4167 aa7.51□□□□□ -1.21
LINC00540-203ENST00000631321 NDUFS5O43920 106 aa7.51□□□□□ -1.21
LINC00540-203ENST00000631321 COA5Q86WW8 74 aa7.51□□□□□ -1.21
LINC00540-203ENST00000631321 DNAH5Q8TE73 4624 aa7.51□□□□□ -1.21
LINC00540-203ENST00000631321 PCOTHQ58A44 107 aa7.5□□□□□ -1.21
LINC00540-203ENST00000631321 A8MUN3 132 aa7.5□□□□□ -1.21
LINC00540-203ENST00000631321 SSBP3-AS1Q7Z2R9 100 aa7.5□□□□□ -1.21
LINC00540-203ENST00000631321 LIMD2Q9BT23 127 aa7.5□□□□□ -1.21
LINC00540-203ENST00000631321 Q5VV11 94 aa7.48□□□□□ -1.21
LINC00540-203ENST00000631321 TGP01266 2768 aa7.47□□□□□ -1.21
LINC00540-203ENST00000631321 KRTAP13-3Q3SY46 172 aa7.47□□□□□ -1.21
LINC00540-203ENST00000631321 DNHD1Q96M86 4753 aa7.46□□□□□ -1.21
LINC00540-203ENST00000631321 CIRBP-AS1Q8TBR5 109 aa7.46□□□□□ -1.22
LINC00540-203ENST00000631321 LY6G6CO95867 125 aa7.45□□□□□ -1.22
LINC00540-203ENST00000631321 LOC101927531A0A1B0GV80 90 aa7.44□□□□□ -1.22
LINC00540-203ENST00000631321 C8orf87E5RJ46 101 aa7.44□□□□□ -1.22
LINC00540-203ENST00000631321 SPINK6Q6UWN8 80 aa7.44□□□□□ -1.22
LINC00540-203ENST00000631321 KRTAP10-2P60368 255 aa7.43□□□□□ -1.22
LINC00540-203ENST00000631321 Q5W150 140 aa7.42□□□□□ -1.22
LINC00540-203ENST00000631321 Q6ZSA8 131 aa7.41□□□□□ -1.22
LINC00540-203ENST00000631321 PRR15LQ9BU68 103 aa7.4□□□□□ -1.22
LINC00540-203ENST00000631321 HRES1P13985 223 aa7.4□□□□□ -1.23
LINC00540-203ENST00000631321 Q75L30 129 aa7.39□□□□□ -1.23
LINC00540-203ENST00000631321 KRTAP13-2Q52LG2 175 aa7.38□□□□□ -1.23
LINC00540-203ENST00000631321 LINC01558Q9Y6Z2 57 aa7.38□□□□□ -1.23
LINC00540-203ENST00000631321 LRP1BQ9NZR2 4599 aa7.37□□□□□ -1.23
LINC00540-203ENST00000631321 CHKB-CPT1BH3BT56 60 aa7.37□□□□□ -1.23
LINC00540-203ENST00000631321 PKD1P98161 4303 aa7.36□□□□□ -1.23
LINC00540-203ENST00000631321 KRTAP10-1P60331 282 aa7.36□□□□□ -1.23
LINC00540-203ENST00000631321 FAT2Q9NYQ8 4349 aa7.35□□□□□ -1.23
LINC00540-203ENST00000631321 LINC00313P59037 77 aa7.35□□□□□ -1.23
LINC00540-203ENST00000631321 FAM229AH3BQW9 127 aa7.32□□□□□ -1.24
LINC00540-203ENST00000631321 SPAG11AQ6PDA7 123 aa7.32□□□□□ -1.24
LINC00540-203ENST00000631321 A8MU10 97 aa7.31□□□□□ -1.24
LINC00540-203ENST00000631321 KRTAP1-4P0C5Y4 121 aa7.31□□□□□ -1.24
LINC00540-203ENST00000631321 KRTAP16-1A8MUX0 517 aa7.29□□□□□ -1.24
LINC00540-203ENST00000631321 HYDINQ4G0P3 5121 aa7.28□□□□□ -1.24
LINC00540-203ENST00000631321 ACYP2P14621 99 aa7.28□□□□□ -1.24
LINC00540-203ENST00000631321 LCA10Q71F78 164 aa7.28□□□□□ -1.24
LINC00540-203ENST00000631321 DMAC1Q96GE9 116 aa7.28□□□□□ -1.24
LINC00540-203ENST00000631321 VPS13BQ7Z7G8 4022 aa7.28□□□□□ -1.24
LINC00540-203ENST00000631321 IGKV2-30P06310 120 aa7.27□□□□□ -1.25
LINC00540-203ENST00000631321 A6NED7 52 aa7.27□□□□□ -1.25
LINC00540-203ENST00000631321 CDC42SE1Q9NRR8 79 aa7.25□□□□□ -1.25
LINC00540-203ENST00000631321 PRR26Q8N8Z3 221 aa7.24□□□□□ -1.25
LINC00540-203ENST00000631321 PMAIP1Q13794 54 aa7.23□□□□□ -1.25
LINC00540-203ENST00000631321 ATP11AUNQ6ZP68 121 aa7.23□□□□□ -1.25
LINC00540-203ENST00000631321 RETNLBQ9BQ08 111 aa7.21□□□□□ -1.26
LINC00540-203ENST00000631321 SPINK1P00995 79 aa7.19□□□□□ -1.26
LINC00540-203ENST00000631321 PLA2G1BP04054 148 aaKnown RBP7.19□□□□□ -1.26
LINC00540-203ENST00000631321 SPINK7P58062 85 aa7.18□□□□□ -1.26
LINC00540-203ENST00000631321 C4orf48Q5BLP8 95 aa7.18□□□□□ -1.26
LINC00540-203ENST00000631321 TYMSOSQ8TAI1 123 aa7.18□□□□□ -1.26
LINC00540-203ENST00000631321 SACSQ9NZJ4 4579 aa7.18□□□□□ -1.26
LINC00540-203ENST00000631321 SPTSSBQ8NFR3 76 aa7.16□□□□□ -1.26
LINC00540-203ENST00000631321 RPS29P62273 56 aaKnown RBP7.14□□□□□ -1.27
LINC00540-203ENST00000631321 A6NN06 94 aa7.13□□□□□ -1.27
LINC00540-203ENST00000631321 IGKV2D-30A0A075B6S6 120 aa7.11□□□□□ -1.27
LINC00540-203ENST00000631321 PKHD1P08F94 4074 aa7.1□□□□□ -1.27
LINC00540-203ENST00000631321 LINC00304Q8N9R0 145 aa7.09□□□□□ -1.27
LINC00540-203ENST00000631321 KTN1-AS1Q86SY8 53 aa7.08□□□□□ -1.28
LINC00540-203ENST00000631321 DYNC1H1Q14204 4646 aaKnown RBP7.08□□□□□ -1.28
LINC00540-203ENST00000631321 KRTAP21-3Q3LHN1 58 aa7.07□□□□□ -1.28
LINC00540-203ENST00000631321 A0A1B0GU69 56 aa7.06□□□□□ -1.28
LINC00540-203ENST00000631321 PKHD1L1Q86WI1 4243 aa7.05□□□□□ -1.28
LINC00540-203ENST00000631321 C7orf65Q6ZTY9 151 aa7.05□□□□□ -1.28
LINC00540-203ENST00000631321 APOBP04114 4563 aaKnown RBP7.01□□□□□ -1.29
LINC00540-203ENST00000631321 SEC61GP60059 68 aa7.01□□□□□ -1.29
LINC00540-203ENST00000631321 SPATA8Q6RVD6 105 aa6.99□□□□□ -1.29
LINC00540-203ENST00000631321 KRTAP10-4P60372 401 aaPredicted RBP6.99□□□□□ -1.29
LINC00540-203ENST00000631321 A0A1B0GVY2 172 aa6.98□□□□□ -1.29
LINC00540-203ENST00000631321 C20orf166-AS1Q96NR2 134 aa6.98□□□□□ -1.29
LINC00540-203ENST00000631321 A8MUU9 505 aa6.97□□□□□ -1.29
LINC00540-203ENST00000631321 SMR3BP02814 79 aaPredicted RBP6.97□□□□□ -1.29
LINC00540-203ENST00000631321 FAT1Q14517 4588 aa6.96□□□□□ -1.29
LINC00540-203ENST00000631321 UQCR11O14957 56 aa6.95□□□□□ -1.3
LINC00540-203ENST00000631321 Q8N1X5 172 aa6.95□□□□□ -1.3
LINC00540-203ENST00000631321 MIR22HGQ0VDD5 57 aa6.92□□□□□ -1.3
LINC00540-203ENST00000631321 C9orf92A6NGG3 77 aa6.9□□□□□ -1.3
LINC00540-203ENST00000631321 RBM12B-AS1Q9P1G2 102 aa6.88□□□□□ -1.31
LINC00540-203ENST00000631321 RYR2Q92736 4967 aa6.87□□□□□ -1.31
LINC00540-203ENST00000631321 KRTAP3-1Q9BYR8 98 aa6.85□□□□□ -1.31
LINC00540-203ENST00000631321 FAT3Q8TDW7 4589 aa6.77□□□□□ -1.33
LINC00540-203ENST00000631321 FLG2Q5D862 2391 aaPredicted RBP6.77□□□□□ -1.33
LINC00540-203ENST00000631321 TNXBP22105 4242 aa6.76□□□□□ -1.33
LINC00540-203ENST00000631321 COX6B2Q6YFQ2 88 aa6.74□□□□□ -1.33
LINC00540-203ENST00000631321 PRAC1Q96KF2 57 aa6.73□□□□□ -1.33
LINC00540-203ENST00000631321 H0YAA0 97 aa6.72□□□□□ -1.33
LINC00540-203ENST00000631321 KRTAP10-8P60410 259 aa6.72□□□□□ -1.33
LINC00540-203ENST00000631321 ADM2Q7Z4H4 148 aa6.72□□□□□ -1.33
LINC00540-203ENST00000631321 KMT2CQ8NEZ4 4911 aaKnown RBP6.72□□□□□ -1.33
LINC00540-203ENST00000631321 A0A1B0GU33 70 aa6.69□□□□□ -1.34
LINC00540-203ENST00000631321 H1FX-AS1Q4G0G2 97 aa6.68□□□□□ -1.34
LINC00540-203ENST00000631321 LRP1Q07954 4544 aaKnown RBP6.68□□□□□ -1.34
LINC00540-203ENST00000631321 HSPG2P98160 4391 aa6.67□□□□□ -1.34
LINC00540-203ENST00000631321 RPL37P61927 97 aaKnown RBP6.64□□□□□ -1.35
LINC00540-203ENST00000631321 Q5VSD8 79 aa6.62□□□□□ -1.35
LINC00540-203ENST00000631321 RYR1P21817 5038 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms