RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 WWC2-AS2Q96NR7 200 aa2.89□□□□□ -1.95
VPS13D-214ENST00000620676 C20orf166-AS1Q96NR2 134 aa2.88□□□□□ -1.95
VPS13D-214ENST00000620676 SPRR1BP22528 89 aa2.88□□□□□ -1.95
VPS13D-214ENST00000620676 DCHS2Q6V1P9 2916 aa2.88□□□□□ -1.95
VPS13D-214ENST00000620676 UNC80Q8N2C7 3258 aa2.88□□□□□ -1.95
VPS13D-214ENST00000620676 Q6ZSA8 131 aa2.87□□□□□ -1.95
VPS13D-214ENST00000620676 KRTAP1-3Q8IUG1 177 aa2.87□□□□□ -1.95
VPS13D-214ENST00000620676 PLAC8Q9NZF1 115 aa2.87□□□□□ -1.95
VPS13D-214ENST00000620676 COX6B2Q6YFQ2 88 aa2.87□□□□□ -1.95
VPS13D-214ENST00000620676 SPTBN5Q9NRC6 3674 aaKnown RBP2.86□□□□□ -1.95
VPS13D-214ENST00000620676 LRBAP50851 2863 aa2.86□□□□□ -1.95
VPS13D-214ENST00000620676 H0YAA0 97 aa2.86□□□□□ -1.95
VPS13D-214ENST00000620676 MYO15AQ9UKN7 3530 aa2.85□□□□□ -1.95
VPS13D-214ENST00000620676 CELSR3Q9NYQ7 3312 aa2.85□□□□□ -1.95
VPS13D-214ENST00000620676 M0QZ58 72 aa2.85□□□□□ -1.95
VPS13D-214ENST00000620676 DMXL1Q9Y485 3027 aa2.85□□□□□ -1.95
VPS13D-214ENST00000620676 DMDP11532 3685 aa2.84□□□□□ -1.95
VPS13D-214ENST00000620676 KRTAP1-1Q07627 177 aa2.84□□□□□ -1.95
VPS13D-214ENST00000620676 LAMA1P25391 3075 aa2.84□□□□□ -1.95
VPS13D-214ENST00000620676 P0C880 135 aa2.84□□□□□ -1.96
VPS13D-214ENST00000620676 PLAC4Q8WY50 150 aa2.83□□□□□ -1.96
VPS13D-214ENST00000620676 WDFY3Q8IZQ1 3526 aa2.83□□□□□ -1.96
VPS13D-214ENST00000620676 FBN2P35556 2912 aa2.82□□□□□ -1.96
VPS13D-214ENST00000620676 PDZD2O15018 2839 aa2.82□□□□□ -1.96
VPS13D-214ENST00000620676 VCANP13611 3396 aa2.82□□□□□ -1.96
VPS13D-214ENST00000620676 VWFP04275 2813 aa2.82□□□□□ -1.96
VPS13D-214ENST00000620676 REV3LO60673 3130 aa2.81□□□□□ -1.96
VPS13D-214ENST00000620676 CRYBG3Q68DQ2 2970 aa2.81□□□□□ -1.96
VPS13D-214ENST00000620676 ZFHX4Q86UP3 3567 aa2.81□□□□□ -1.96
VPS13D-214ENST00000620676 TGP01266 2768 aa2.81□□□□□ -1.96
VPS13D-214ENST00000620676 R4GN34 69 aa2.8□□□□□ -1.96
VPS13D-214ENST00000620676 HRNRQ86YZ3 2850 aaPredicted RBP2.8□□□□□ -1.96
VPS13D-214ENST00000620676 SEC61BP60468 96 aaKnown RBP2.8□□□□□ -1.96
VPS13D-214ENST00000620676 KRTAP10-1P60331 282 aa2.79□□□□□ -1.96
VPS13D-214ENST00000620676 KRTAP10-2P60368 255 aa2.78□□□□□ -1.96
VPS13D-214ENST00000620676 KRTAP10-8P60410 259 aa2.78□□□□□ -1.96
VPS13D-214ENST00000620676 COL6A3P12111 3177 aa2.78□□□□□ -1.96
VPS13D-214ENST00000620676 TPRXLQ17RH7 258 aa2.77□□□□□ -1.97
VPS13D-214ENST00000620676 SPEGQ15772 3267 aa2.76□□□□□ -1.97
VPS13D-214ENST00000620676 KRTAP13-2Q52LG2 175 aa2.76□□□□□ -1.97
VPS13D-214ENST00000620676 ZFHX3Q15911 3703 aa2.75□□□□□ -1.97
VPS13D-214ENST00000620676 PKD1L1Q8TDX9 2849 aa2.75□□□□□ -1.97
VPS13D-214ENST00000620676 SRRM2Q9UQ35 2752 aaKnown RBP2.75□□□□□ -1.97
VPS13D-214ENST00000620676 CSMD1Q96PZ7 3565 aa2.73□□□□□ -1.97
VPS13D-214ENST00000620676 J3QL48 77 aa2.73□□□□□ -1.97
VPS13D-214ENST00000620676 TENM2Q9NT68 2774 aa2.73□□□□□ -1.97
VPS13D-214ENST00000620676 KRTAP13-1Q8IUC0 172 aa2.72□□□□□ -1.97
VPS13D-214ENST00000620676 CELSR1Q9NYQ6 3014 aa2.71□□□□□ -1.98
VPS13D-214ENST00000620676 SMG1Q96Q15 3661 aaKnown RBP2.7□□□□□ -1.98
VPS13D-214ENST00000620676 FBN3Q75N90 2809 aa2.69□□□□□ -1.98
VPS13D-214ENST00000620676 SVEP1Q4LDE5 3571 aa2.69□□□□□ -1.98
VPS13D-214ENST00000620676 KRTAP12-2P59991 146 aa2.67□□□□□ -1.98
VPS13D-214ENST00000620676 ASPMQ8IZT6 3477 aa2.67□□□□□ -1.98
VPS13D-214ENST00000620676 M0R2T5 61 aa2.67□□□□□ -1.98
VPS13D-214ENST00000620676 EYSQ5T1H1 3165 aa2.67□□□□□ -1.98
VPS13D-214ENST00000620676 OTOGQ6ZRI0 2925 aa2.66□□□□□ -1.98
VPS13D-214ENST00000620676 BSNQ9UPA5 3926 aa2.65□□□□□ -1.99
VPS13D-214ENST00000620676 AKAP9Q99996 3911 aa2.65□□□□□ -1.99
VPS13D-214ENST00000620676 KRTAP19-4Q3LI73 84 aa2.64□□□□□ -1.99
VPS13D-214ENST00000620676 KRTAP15-1Q3LI76 137 aa2.64□□□□□ -1.99
VPS13D-214ENST00000620676 FBN1P35555 2871 aaKnown RBP2.63□□□□□ -1.99
VPS13D-214ENST00000620676 SPENQ96T58 3664 aaKnown RBP2.63□□□□□ -1.99
VPS13D-214ENST00000620676 LAMA5O15230 3695 aa2.63□□□□□ -1.99
VPS13D-214ENST00000620676 LOC400499M0QZD8 3231 aa2.62□□□□□ -1.99
VPS13D-214ENST00000620676 KRTAP13-3Q3SY46 172 aa2.62□□□□□ -1.99
VPS13D-214ENST00000620676 Q6ZRN7 208 aaPredicted RBP2.62□□□□□ -1.99
VPS13D-214ENST00000620676 PP632Q6XCG6 107 aa2.62□□□□□ -1.99
VPS13D-214ENST00000620676 RELNP78509 3460 aa2.61□□□□□ -1.99
VPS13D-214ENST00000620676 DNAH1Q9P2D7 4330 aa2.61□□□□□ -1.99
VPS13D-214ENST00000620676 DCHS1Q96JQ0 3298 aa2.6□□□□□ -1.99
VPS13D-214ENST00000620676 KRTAP13-4Q3LI77 160 aa2.6□□□□□ -1.99
VPS13D-214ENST00000620676 A0A1B0GVY2 172 aa2.6□□□□□ -1.99
VPS13D-214ENST00000620676 COL7A1Q02388 2944 aa2.59□□□□□ -1.99
VPS13D-214ENST00000620676 KRTAP3-1Q9BYR8 98 aa2.56□□□□□ -2
VPS13D-214ENST00000620676 Q5VSD8 79 aa2.56□□□□□ -2
VPS13D-214ENST00000620676 CUBNO60494 3623 aa2.55□□□□□ -2
VPS13D-214ENST00000620676 FRAS1Q86XX4 4008 aa2.55□□□□□ -2
VPS13D-214ENST00000620676 TNP1P09430 55 aa2.54□□□□□ -2
VPS13D-214ENST00000620676 KRTAP12-1P59990 96 aa2.53□□□□□ -2
VPS13D-214ENST00000620676 DNAH6Q9C0G6 4158 aa2.52□□□□□ -2.01
VPS13D-214ENST00000620676 NBPF19A0A087WUL8 3843 aa2.52□□□□□ -2.01
VPS13D-214ENST00000620676 KRTAP1-4P0C5Y4 121 aa2.51□□□□□ -2.01
VPS13D-214ENST00000620676 MEGF8Q7Z7M0 2845 aa2.5□□□□□ -2.01
VPS13D-214ENST00000620676 ANK2Q01484 3957 aa2.48□□□□□ -2.01
VPS13D-214ENST00000620676 VPS13BQ7Z7G8 4022 aa2.48□□□□□ -2.01
VPS13D-214ENST00000620676 KRTAP10-6P60371 365 aaPredicted RBP2.47□□□□□ -2.01
VPS13D-214ENST00000620676 KRTAP23-1A1A580 65 aa2.46□□□□□ -2.02
VPS13D-214ENST00000620676 XP32Q5T750 250 aa2.46□□□□□ -2.02
VPS13D-214ENST00000620676 PRO2289Q9P1D8 64 aa2.45□□□□□ -2.02
VPS13D-214ENST00000620676 CSMD3Q7Z407 3707 aa2.44□□□□□ -2.02
VPS13D-214ENST00000620676 VPS13CQ709C8 3753 aa2.44□□□□□ -2.02
VPS13D-214ENST00000620676 TRRAPQ9Y4A5 3859 aa2.43□□□□□ -2.02
VPS13D-214ENST00000620676 DNAH3Q8TD57 4116 aa2.42□□□□□ -2.02
VPS13D-214ENST00000620676 HUWE1Q7Z6Z7 4374 aaKnown RBP2.41□□□□□ -2.02
VPS13D-214ENST00000620676 KRTAP3-2Q9BYR7 98 aa2.41□□□□□ -2.02
VPS13D-214ENST00000620676 CMYA5Q8N3K9 4069 aa2.41□□□□□ -2.02
VPS13D-214ENST00000620676 HECTD4Q9Y4D8 3996 aa2.4□□□□□ -2.03
VPS13D-214ENST00000620676 CSMD2Q7Z408 3487 aa2.39□□□□□ -2.03
VPS13D-214ENST00000620676 KRTAP3-3Q9BYR6 98 aa2.37□□□□□ -2.03
VPS13D-214ENST00000620676 PRKDCP78527 4128 aaKnown RBP2.34□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms