RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 DYNC2H1Q8NCM8 4307 aaKnown RBP9.14□□□□□ -0.95
CPSF1-213ENST00000620219 NOTCH2NLQ7Z3S9 236 aa9.14□□□□□ -0.95
CPSF1-213ENST00000620219 MMP24-AS1A0A0U1RRL7 71 aa9.14□□□□□ -0.95
CPSF1-213ENST00000620219 C1orf195Q5TG92 126 aa9.13□□□□□ -0.95
CPSF1-213ENST00000620219 TP53AIP1Q9HCN2 124 aa9.13□□□□□ -0.95
CPSF1-213ENST00000620219 A0A1B0GVY2 172 aa9.12□□□□□ -0.95
CPSF1-213ENST00000620219 HYDINQ4G0P3 5121 aa9.12□□□□□ -0.95
CPSF1-213ENST00000620219 C8orf87E5RJ46 101 aa9.11□□□□□ -0.95
CPSF1-213ENST00000620219 A0A0U1RQV1 116 aa9.11□□□□□ -0.95
CPSF1-213ENST00000620219 MPLKIPQ8TAP9 179 aa9.11□□□□□ -0.95
CPSF1-213ENST00000620219 KRTAP1-4P0C5Y4 121 aa9.09□□□□□ -0.95
CPSF1-213ENST00000620219 DNAH6Q9C0G6 4158 aa9.09□□□□□ -0.95
CPSF1-213ENST00000620219 J3QL48 77 aa9.06□□□□□ -0.96
CPSF1-213ENST00000620219 CHKB-CPT1BH3BT56 60 aa9.06□□□□□ -0.96
CPSF1-213ENST00000620219 DNAH17Q9UFH2 4485 aa9.06□□□□□ -0.96
CPSF1-213ENST00000620219 HECTD4Q9Y4D8 3996 aa9.05□□□□□ -0.96
CPSF1-213ENST00000620219 KRTAP29-1A8MX34 341 aaPredicted RBP9.04□□□□□ -0.96
CPSF1-213ENST00000620219 FRAS1Q86XX4 4008 aa9.04□□□□□ -0.96
CPSF1-213ENST00000620219 SERP1Q9Y6X1 66 aa9.02□□□□□ -0.97
CPSF1-213ENST00000620219 DNAH5Q8TE73 4624 aa8.99□□□□□ -0.97
CPSF1-213ENST00000620219 ALMS1Q8TCU4 4167 aa8.98□□□□□ -0.97
CPSF1-213ENST00000620219 LRP1BQ9NZR2 4599 aa8.97□□□□□ -0.97
CPSF1-213ENST00000620219 ATP5EP56381 51 aaPredicted RBP8.97□□□□□ -0.97
CPSF1-213ENST00000620219 RPS28P62857 69 aaKnown RBP8.94□□□□□ -0.98
CPSF1-213ENST00000620219 H3BPC8 53 aa8.94□□□□□ -0.98
CPSF1-213ENST00000620219 OXTP01178 125 aa8.94□□□□□ -0.98
CPSF1-213ENST00000620219 DNAH8Q96JB1 4490 aa8.93□□□□□ -0.98
CPSF1-213ENST00000620219 IGLV7-46A0A075B6I9 117 aa8.93□□□□□ -0.98
CPSF1-213ENST00000620219 LOC101927531A0A1B0GV80 90 aa8.92□□□□□ -0.98
CPSF1-213ENST00000620219 PKHD1P08F94 4074 aa8.91□□□□□ -0.98
CPSF1-213ENST00000620219 ATP11AUNQ6ZP68 121 aa8.9□□□□□ -0.98
CPSF1-213ENST00000620219 BRK1Q8WUW1 75 aa8.9□□□□□ -0.98
CPSF1-213ENST00000620219 C4orf26Q17RF5 130 aa8.9□□□□□ -0.99
CPSF1-213ENST00000620219 SMIM26A0A096LP01 95 aa8.89□□□□□ -0.99
CPSF1-213ENST00000620219 FAT1Q14517 4588 aa8.89□□□□□ -0.99
CPSF1-213ENST00000620219 Q8N1X5 172 aa8.88□□□□□ -0.99
CPSF1-213ENST00000620219 Q5W150 140 aa8.88□□□□□ -0.99
CPSF1-213ENST00000620219 Q8N9P0 234 aaPredicted RBP8.87□□□□□ -0.99
CPSF1-213ENST00000620219 SACSQ9NZJ4 4579 aa8.87□□□□□ -0.99
CPSF1-213ENST00000620219 V9GYY9 64 aa8.87□□□□□ -0.99
CPSF1-213ENST00000620219 C7orf65Q6ZTY9 151 aa8.86□□□□□ -0.99
CPSF1-213ENST00000620219 DYNC1H1Q14204 4646 aaKnown RBP8.85□□□□□ -0.99
CPSF1-213ENST00000620219 KMT2CQ8NEZ4 4911 aaKnown RBP8.85□□□□□ -0.99
CPSF1-213ENST00000620219 ASB16-AS1Q495Z4 193 aa8.85□□□□□ -0.99
CPSF1-213ENST00000620219 PSPHP1O15172 72 aa8.84□□□□□ -0.99
CPSF1-213ENST00000620219 ZCCHC13Q8WW36 166 aaKnown RBP8.84□□□□□ -1
CPSF1-213ENST00000620219 PRO0628Q9UI54 55 aa8.81□□□□□ -1
CPSF1-213ENST00000620219 Q5XG85 94 aa8.8□□□□□ -1
CPSF1-213ENST00000620219 VPS13BQ7Z7G8 4022 aa8.79□□□□□ -1
CPSF1-213ENST00000620219 FAT2Q9NYQ8 4349 aa8.76□□□□□ -1.01
CPSF1-213ENST00000620219 CYP4F30PQ9H0H9 118 aa8.76□□□□□ -1.01
CPSF1-213ENST00000620219 COA5Q86WW8 74 aa8.76□□□□□ -1.01
CPSF1-213ENST00000620219 HRES1P13985 223 aa8.75□□□□□ -1.01
CPSF1-213ENST00000620219 ACYP2P14621 99 aa8.75□□□□□ -1.01
CPSF1-213ENST00000620219 RPS29P62273 56 aaKnown RBP8.73□□□□□ -1.01
CPSF1-213ENST00000620219 FP248Q71RG6 208 aaPredicted RBP8.71□□□□□ -1.01
CPSF1-213ENST00000620219 PRR15LQ9BU68 103 aa8.7□□□□□ -1.02
CPSF1-213ENST00000620219 PKD1P98161 4303 aa8.69□□□□□ -1.02
CPSF1-213ENST00000620219 RYR2Q92736 4967 aa8.69□□□□□ -1.02
CPSF1-213ENST00000620219 SPANXA2-OT1Q8N9U9 137 aa8.68□□□□□ -1.02
CPSF1-213ENST00000620219 SEC61GP60059 68 aa8.67□□□□□ -1.02
CPSF1-213ENST00000620219 SPINK7P58062 85 aa8.67□□□□□ -1.02
CPSF1-213ENST00000620219 KRTAP10-4P60372 401 aaPredicted RBP8.66□□□□□ -1.02
CPSF1-213ENST00000620219 KIAA1109Q2LD37 5005 aa8.66□□□□□ -1.02
CPSF1-213ENST00000620219 A8MUN3 132 aa8.64□□□□□ -1.03
CPSF1-213ENST00000620219 KRTAP10-8P60410 259 aa8.62□□□□□ -1.03
CPSF1-213ENST00000620219 RYR3Q15413 4870 aa8.6□□□□□ -1.03
CPSF1-213ENST00000620219 APOBP04114 4563 aaKnown RBP8.59□□□□□ -1.04
CPSF1-213ENST00000620219 KRTAP16-1A8MUX0 517 aa8.58□□□□□ -1.04
CPSF1-213ENST00000620219 A6NED7 52 aa8.58□□□□□ -1.04
CPSF1-213ENST00000620219 KRTAP4-5Q9BYR2 181 aa8.56□□□□□ -1.04
CPSF1-213ENST00000620219 SPTSSBQ8NFR3 76 aa8.54□□□□□ -1.04
CPSF1-213ENST00000620219 LRP1Q07954 4544 aaKnown RBP8.51□□□□□ -1.05
CPSF1-213ENST00000620219 A0A1B0GU69 56 aa8.49□□□□□ -1.05
CPSF1-213ENST00000620219 A8MUU9 505 aa8.48□□□□□ -1.05
CPSF1-213ENST00000620219 PMAIP1Q13794 54 aa8.48□□□□□ -1.05
CPSF1-213ENST00000620219 C20orf166-AS1Q96NR2 134 aa8.48□□□□□ -1.05
CPSF1-213ENST00000620219 KRTAP13-3Q3SY46 172 aa8.47□□□□□ -1.05
CPSF1-213ENST00000620219 Q75L30 129 aa8.47□□□□□ -1.05
CPSF1-213ENST00000620219 RYR1P21817 5038 aa8.47□□□□□ -1.05
CPSF1-213ENST00000620219 COX6B2Q6YFQ2 88 aa8.45□□□□□ -1.06
CPSF1-213ENST00000620219 XP32Q5T750 250 aa8.45□□□□□ -1.06
CPSF1-213ENST00000620219 RPL37P61927 97 aaKnown RBP8.43□□□□□ -1.06
CPSF1-213ENST00000620219 Q1T7F1 81 aa8.43□□□□□ -1.06
CPSF1-213ENST00000620219 RBM12B-AS1Q9P1G2 102 aa8.42□□□□□ -1.06
CPSF1-213ENST00000620219 DMAC1Q96GE9 116 aa8.42□□□□□ -1.06
CPSF1-213ENST00000620219 MT1HL1P0DM35 61 aa8.41□□□□□ -1.06
CPSF1-213ENST00000620219 MYCBP2O75592 4640 aa8.4□□□□□ -1.07
CPSF1-213ENST00000620219 KRTAP17-1Q9BYP8 105 aa8.4□□□□□ -1.07
CPSF1-213ENST00000620219 SEC61BP60468 96 aaKnown RBP8.37□□□□□ -1.07
CPSF1-213ENST00000620219 Q5VV11 94 aa8.34□□□□□ -1.07
CPSF1-213ENST00000620219 EPPK1P58107 5090 aaKnown RBP8.32□□□□□ -1.08
CPSF1-213ENST00000620219 FAT3Q8TDW7 4589 aa8.3□□□□□ -1.08
CPSF1-213ENST00000620219 HSPG2P98160 4391 aa8.29□□□□□ -1.08
CPSF1-213ENST00000620219 A8MU10 97 aa8.27□□□□□ -1.08
CPSF1-213ENST00000620219 LINC01558Q9Y6Z2 57 aa8.27□□□□□ -1.09
CPSF1-213ENST00000620219 TPRXLQ17RH7 258 aa8.27□□□□□ -1.09
CPSF1-213ENST00000620219 S4R3F8 94 aa8.24□□□□□ -1.09
CPSF1-213ENST00000620219 UQCR11O14957 56 aa8.18□□□□□ -1.1
CPSF1-213ENST00000620219 CSAG1Q6PB30 78 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms