RNA–Protein interactions for RNA: ENST00000618939.4

CNOT3-210, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 5

Gene CNOT3, Length 4,516 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-210ENST00000618939 KRTAP10-2P60368 255 aa8.25□□□□□ -1.09
CNOT3-210ENST00000618939 TENM1Q9UKZ4 2725 aa8.23□□□□□ -1.09
CNOT3-210ENST00000618939 TENM4Q6N022 2769 aa8.23□□□□□ -1.09
CNOT3-210ENST00000618939 KRTAP10-1P60331 282 aa8.21□□□□□ -1.09
CNOT3-210ENST00000618939 PDZD2O15018 2839 aa8.21□□□□□ -1.1
CNOT3-210ENST00000618939 KRTAP13-1Q8IUC0 172 aa8.2□□□□□ -1.1
CNOT3-210ENST00000618939 SPENQ96T58 3664 aaKnown RBP8.18□□□□□ -1.1
CNOT3-210ENST00000618939 A0A087X002 238 aa8.17□□□□□ -1.1
CNOT3-210ENST00000618939 NOTCH2NLQ7Z3S9 236 aa8.17□□□□□ -1.1
CNOT3-210ENST00000618939 VWFP04275 2813 aa8.17□□□□□ -1.1
CNOT3-210ENST00000618939 SPINT4Q6UDR6 99 aa8.14□□□□□ -1.11
CNOT3-210ENST00000618939 BSNQ9UPA5 3926 aa8.13□□□□□ -1.11
CNOT3-210ENST00000618939 SPINK7P58062 85 aa8.13□□□□□ -1.11
CNOT3-210ENST00000618939 LCA10Q71F78 164 aa8.11□□□□□ -1.11
CNOT3-210ENST00000618939 DMAC1Q96GE9 116 aa8.1□□□□□ -1.11
CNOT3-210ENST00000618939 OTOGQ6ZRI0 2925 aa8.07□□□□□ -1.12
CNOT3-210ENST00000618939 ASB16-AS1Q495Z4 193 aa8.05□□□□□ -1.12
CNOT3-210ENST00000618939 CUBNO60494 3623 aa8.05□□□□□ -1.12
CNOT3-210ENST00000618939 DMBT1Q9UGM3 2413 aaPredicted RBP8.04□□□□□ -1.12
CNOT3-210ENST00000618939 A0A1B0GU33 70 aa8.01□□□□□ -1.13
CNOT3-210ENST00000618939 NBPF19A0A087WUL8 3843 aa8□□□□□ -1.13
CNOT3-210ENST00000618939 FBN1P35555 2871 aaKnown RBP7.99□□□□□ -1.13
CNOT3-210ENST00000618939 RBM12B-AS1Q9P1G2 102 aa7.98□□□□□ -1.13
CNOT3-210ENST00000618939 KRTAP13-2Q52LG2 175 aa7.98□□□□□ -1.13
CNOT3-210ENST00000618939 CSMD2Q7Z408 3487 aa7.96□□□□□ -1.14
CNOT3-210ENST00000618939 A0A0D9SG42 100 aa7.95□□□□□ -1.14
CNOT3-210ENST00000618939 PRAC1Q96KF2 57 aa7.92□□□□□ -1.14
CNOT3-210ENST00000618939 CRIPTQ9P021 101 aa7.88□□□□□ -1.15
CNOT3-210ENST00000618939 PKD1L1Q8TDX9 2849 aa7.87□□□□□ -1.15
CNOT3-210ENST00000618939 A8MU10 97 aa7.85□□□□□ -1.15
CNOT3-210ENST00000618939 Q6ZSA8 131 aa7.85□□□□□ -1.15
CNOT3-210ENST00000618939 ANK3Q12955 4377 aaKnown RBP7.84□□□□□ -1.15
CNOT3-210ENST00000618939 RPS29P62273 56 aaKnown RBP7.84□□□□□ -1.16
CNOT3-210ENST00000618939 H3BS24 57 aa7.83□□□□□ -1.16
CNOT3-210ENST00000618939 Q5VSD8 79 aa7.82□□□□□ -1.16
CNOT3-210ENST00000618939 COX6B2Q6YFQ2 88 aa7.82□□□□□ -1.16
CNOT3-210ENST00000618939 TGP01266 2768 aa7.8□□□□□ -1.16
CNOT3-210ENST00000618939 LINC01554Q52M75 96 aa7.79□□□□□ -1.16
CNOT3-210ENST00000618939 ZFHX3Q15911 3703 aa7.79□□□□□ -1.16
CNOT3-210ENST00000618939 SPATA8Q6RVD6 105 aa7.79□□□□□ -1.16
CNOT3-210ENST00000618939 S4R3F8 94 aa7.79□□□□□ -1.16
CNOT3-210ENST00000618939 FLG2Q5D862 2391 aaPredicted RBP7.76□□□□□ -1.17
CNOT3-210ENST00000618939 A6NN06 94 aa7.76□□□□□ -1.17
CNOT3-210ENST00000618939 CSAG1Q6PB30 78 aa7.76□□□□□ -1.17
CNOT3-210ENST00000618939 H1FX-AS1Q4G0G2 97 aa7.75□□□□□ -1.17
CNOT3-210ENST00000618939 KRTAP1-4P0C5Y4 121 aa7.73□□□□□ -1.17
CNOT3-210ENST00000618939 TENM2Q9NT68 2774 aa7.72□□□□□ -1.17
CNOT3-210ENST00000618939 TRRAPQ9Y4A5 3859 aa7.71□□□□□ -1.17
CNOT3-210ENST00000618939 LUZP6Q538Z0 58 aa7.69□□□□□ -1.18
CNOT3-210ENST00000618939 RPL37P61927 97 aaKnown RBP7.66□□□□□ -1.18
CNOT3-210ENST00000618939 VPS13CQ709C8 3753 aa7.64□□□□□ -1.19
CNOT3-210ENST00000618939 A8MUU9 505 aa7.62□□□□□ -1.19
CNOT3-210ENST00000618939 C20orf166-AS1Q96NR2 134 aa7.6□□□□□ -1.19
CNOT3-210ENST00000618939 KRTAP21-3Q3LHN1 58 aa7.6□□□□□ -1.19
CNOT3-210ENST00000618939 KRTAP16-1A8MUX0 517 aa7.59□□□□□ -1.19
CNOT3-210ENST00000618939 ROMO1P60602 79 aa7.56□□□□□ -1.2
CNOT3-210ENST00000618939 ADM2Q7Z4H4 148 aa7.56□□□□□ -1.2
CNOT3-210ENST00000618939 SEC61BP60468 96 aaKnown RBP7.55□□□□□ -1.2
CNOT3-210ENST00000618939 R4GN34 69 aa7.53□□□□□ -1.2
CNOT3-210ENST00000618939 KRTAP13-3Q3SY46 172 aa7.53□□□□□ -1.2
CNOT3-210ENST00000618939 A0A0A0MQY5 61 aa7.51□□□□□ -1.21
CNOT3-210ENST00000618939 CAMK2N1Q7Z7J9 78 aa7.5□□□□□ -1.21
CNOT3-210ENST00000618939 SRRM2Q9UQ35 2752 aaKnown RBP7.5□□□□□ -1.21
CNOT3-210ENST00000618939 ZNF469Q96JG9 3925 aaPredicted RBP7.48□□□□□ -1.21
CNOT3-210ENST00000618939 FBN3Q75N90 2809 aa7.48□□□□□ -1.21
CNOT3-210ENST00000618939 M0QZ58 72 aa7.45□□□□□ -1.22
CNOT3-210ENST00000618939 M0R2T5 61 aa7.44□□□□□ -1.22
CNOT3-210ENST00000618939 KRTAP25-1Q3LHN0 102 aa7.4□□□□□ -1.22
CNOT3-210ENST00000618939 MEGF8Q7Z7M0 2845 aa7.39□□□□□ -1.23
CNOT3-210ENST00000618939 XP32Q5T750 250 aa7.33□□□□□ -1.24
CNOT3-210ENST00000618939 H0YAA0 97 aa7.33□□□□□ -1.24
CNOT3-210ENST00000618939 AKAP9Q99996 3911 aa7.31□□□□□ -1.24
CNOT3-210ENST00000618939 HUWE1Q7Z6Z7 4374 aaKnown RBP7.25□□□□□ -1.25
CNOT3-210ENST00000618939 A0A1B0GVY2 172 aa7.25□□□□□ -1.25
CNOT3-210ENST00000618939 KRTAP10-8P60410 259 aa7.17□□□□□ -1.26
CNOT3-210ENST00000618939 COL7A1Q02388 2944 aa7.15□□□□□ -1.26
CNOT3-210ENST00000618939 TPRXLQ17RH7 258 aa7.12□□□□□ -1.27
CNOT3-210ENST00000618939 P0C880 135 aa7.09□□□□□ -1.27
CNOT3-210ENST00000618939 KRTAP3-1Q9BYR8 98 aa7.08□□□□□ -1.28
CNOT3-210ENST00000618939 CSMD3Q7Z407 3707 aa7.05□□□□□ -1.28
CNOT3-210ENST00000618939 C10orf95Q9H7T3 257 aa7.04□□□□□ -1.28
CNOT3-210ENST00000618939 PLAC4Q8WY50 150 aa7□□□□□ -1.29
CNOT3-210ENST00000618939 DNAH9Q9NYC9 4486 aa7□□□□□ -1.29
CNOT3-210ENST00000618939 NDUFAF8A1L188 74 aa6.99□□□□□ -1.29
CNOT3-210ENST00000618939 PLECQ15149 4684 aaKnown RBP6.9□□□□□ -1.31
CNOT3-210ENST00000618939 TNP1P09430 55 aa6.85□□□□□ -1.31
CNOT3-210ENST00000618939 DNAH10Q8IVF4 4471 aa6.85□□□□□ -1.31
CNOT3-210ENST00000618939 KRTAP10-4P60372 401 aaPredicted RBP6.84□□□□□ -1.31
CNOT3-210ENST00000618939 KRTAP12-2P59991 146 aa6.82□□□□□ -1.32
CNOT3-210ENST00000618939 DNAH1Q9P2D7 4330 aa6.82□□□□□ -1.32
CNOT3-210ENST00000618939 KRTAP10-6P60371 365 aaPredicted RBP6.82□□□□□ -1.32
CNOT3-210ENST00000618939 KRTAP13-4Q3LI77 160 aa6.78□□□□□ -1.32
CNOT3-210ENST00000618939 PP632Q6XCG6 107 aa6.78□□□□□ -1.32
CNOT3-210ENST00000618939 KRTAP12-1P59990 96 aa6.76□□□□□ -1.33
CNOT3-210ENST00000618939 DNAH11Q96DT5 4516 aa6.75□□□□□ -1.33
CNOT3-210ENST00000618939 VPS13DQ5THJ4 4388 aa6.74□□□□□ -1.33
CNOT3-210ENST00000618939 MT1HL1P0DM35 61 aa6.73□□□□□ -1.33
CNOT3-210ENST00000618939 DNAH17Q9UFH2 4485 aa6.7□□□□□ -1.34
CNOT3-210ENST00000618939 DNAH5Q8TE73 4624 aa6.7□□□□□ -1.34
CNOT3-210ENST00000618939 KRTAP3-3Q9BYR6 98 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms