RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 Q6ZVQ6 151 aa9.01□□□□□ -0.97
CCDC28A-202ENST00000611852 MUC2Q02817 5179 aa8.99□□□□□ -0.97
CCDC28A-202ENST00000611852 SEC61BP60468 96 aaKnown RBP8.98□□□□□ -0.97
CCDC28A-202ENST00000611852 NREPQ16612 68 aa8.98□□□□□ -0.97
CCDC28A-202ENST00000611852 LINC00472Q9H8W2 130 aa8.98□□□□□ -0.97
CCDC28A-202ENST00000611852 MUC17Q685J3 4493 aa8.97□□□□□ -0.97
CCDC28A-202ENST00000611852 IGKV3D-7A0A0C4DH55 119 aa8.95□□□□□ -0.98
CCDC28A-202ENST00000611852 IGKV4-1P06312 121 aa8.95□□□□□ -0.98
CCDC28A-202ENST00000611852 IMUPQ9GZP8 106 aa8.95□□□□□ -0.98
CCDC28A-202ENST00000611852 DEFB116Q30KQ4 102 aa8.94□□□□□ -0.98
CCDC28A-202ENST00000611852 CXCL6P80162 114 aa8.93□□□□□ -0.98
CCDC28A-202ENST00000611852 RPL37P61927 97 aaKnown RBP8.9□□□□□ -0.98
CCDC28A-202ENST00000611852 BPY2O14599 106 aa8.9□□□□□ -0.99
CCDC28A-202ENST00000611852 SCGB1A1P11684 91 aa8.9□□□□□ -0.99
CCDC28A-202ENST00000611852 PCOTHQ58A44 107 aa8.88□□□□□ -0.99
CCDC28A-202ENST00000611852 KRTAP4-1Q9BYQ7 146 aa8.88□□□□□ -0.99
CCDC28A-202ENST00000611852 KRTAP3-3Q9BYR6 98 aa8.88□□□□□ -0.99
CCDC28A-202ENST00000611852 KRTAP3-2Q9BYR7 98 aa8.88□□□□□ -0.99
CCDC28A-202ENST00000611852 HIST1H4AP62805 103 aaKnown RBP8.87□□□□□ -0.99
CCDC28A-202ENST00000611852 DSCR10P59022 87 aa8.86□□□□□ -0.99
CCDC28A-202ENST00000611852 J3KT08 172 aa8.85□□□□□ -0.99
CCDC28A-202ENST00000611852 LINC00313P59037 77 aa8.84□□□□□ -0.99
CCDC28A-202ENST00000611852 Q75L30 129 aa8.84□□□□□ -0.99
CCDC28A-202ENST00000611852 IGHV6-1A0A0B4J1U7 121 aa8.83□□□□□ -1
CCDC28A-202ENST00000611852 NOTCH2NLQ7Z3S9 236 aa8.82□□□□□ -1
CCDC28A-202ENST00000611852 A0A1B0GVX0 72 aa8.81□□□□□ -1
CCDC28A-202ENST00000611852 C20orf166-AS1Q96NR2 134 aa8.81□□□□□ -1
CCDC28A-202ENST00000611852 A0A087WVE0 104 aa8.8□□□□□ -1
CCDC28A-202ENST00000611852 FAM236AA0A1B0GUQ0 79 aa8.8□□□□□ -1
CCDC28A-202ENST00000611852 FAM236BA0A1B0GV22 79 aa8.8□□□□□ -1
CCDC28A-202ENST00000611852 A0A0U1RQV1 116 aa8.79□□□□□ -1
CCDC28A-202ENST00000611852 A8MUU9 505 aa8.79□□□□□ -1
CCDC28A-202ENST00000611852 KRTAP16-1A8MUX0 517 aa8.79□□□□□ -1
CCDC28A-202ENST00000611852 C8orf87E5RJ46 101 aa8.77□□□□□ -1.01
CCDC28A-202ENST00000611852 NDUFB1O75438 58 aa8.77□□□□□ -1.01
CCDC28A-202ENST00000611852 Q8N9L7 120 aa8.77□□□□□ -1.01
CCDC28A-202ENST00000611852 A8MWP4 228 aa8.76□□□□□ -1.01
CCDC28A-202ENST00000611852 ATP11AUNQ6ZP68 121 aa8.76□□□□□ -1.01
CCDC28A-202ENST00000611852 K7EQZ3 153 aa8.74□□□□□ -1.01
CCDC28A-202ENST00000611852 ATOX1O00244 68 aa8.7□□□□□ -1.02
CCDC28A-202ENST00000611852 PRR15Q8IV56 129 aa8.7□□□□□ -1.02
CCDC28A-202ENST00000611852 PCP4P48539 62 aa8.7□□□□□ -1.02
CCDC28A-202ENST00000611852 ANAPC13Q9BS18 74 aa8.7□□□□□ -1.02
CCDC28A-202ENST00000611852 C8orf17Q9NRJ1 99 aa8.7□□□□□ -1.02
CCDC28A-202ENST00000611852 FAT4Q6V0I7 4981 aa8.69□□□□□ -1.02
CCDC28A-202ENST00000611852 HCG22E2RYF7 251 aa8.66□□□□□ -1.02
CCDC28A-202ENST00000611852 KRTAP19-2Q3LHN2 52 aa8.63□□□□□ -1.03
CCDC28A-202ENST00000611852 MMP24-AS1A0A0U1RRL7 71 aa8.62□□□□□ -1.03
CCDC28A-202ENST00000611852 SMIM20Q8N5G0 67 aa8.62□□□□□ -1.03
CCDC28A-202ENST00000611852 Q8N9P0 234 aaPredicted RBP8.62□□□□□ -1.03
CCDC28A-202ENST00000611852 LCE2AQ5TA79 106 aaPredicted RBP8.61□□□□□ -1.03
CCDC28A-202ENST00000611852 CASC2Q6XLA1 102 aa8.59□□□□□ -1.03
CCDC28A-202ENST00000611852 WFDC13Q8IUB5 93 aa8.59□□□□□ -1.03
CCDC28A-202ENST00000611852 LCE2CQ5TA81 110 aa8.59□□□□□ -1.03
CCDC28A-202ENST00000611852 TMEM254Q8TBM7 123 aa8.58□□□□□ -1.04
CCDC28A-202ENST00000611852 SERP2Q8N6R1 65 aa8.57□□□□□ -1.04
CCDC28A-202ENST00000611852 hDV103S1A0JD37 113 aa8.56□□□□□ -1.04
CCDC28A-202ENST00000611852 MRPL34Q9BQ48 92 aaKnown RBP8.56□□□□□ -1.04
CCDC28A-202ENST00000611852 TRAV7A0A075B6U4 112 aa8.55□□□□□ -1.04
CCDC28A-202ENST00000611852 ZCCHC13Q8WW36 166 aaKnown RBP8.55□□□□□ -1.04
CCDC28A-202ENST00000611852 COX7CP15954 63 aa8.53□□□□□ -1.04
CCDC28A-202ENST00000611852 OCR1Q9BZK8 76 aa8.52□□□□□ -1.05
CCDC28A-202ENST00000611852 UQCRQO14949 82 aa8.51□□□□□ -1.05
CCDC28A-202ENST00000611852 COX6B2Q6YFQ2 88 aa8.48□□□□□ -1.05
CCDC28A-202ENST00000611852 NDUFS5O43920 106 aa8.47□□□□□ -1.05
CCDC28A-202ENST00000611852 CCDC179H3BU77 68 aa8.46□□□□□ -1.05
CCDC28A-202ENST00000611852 MT1HP80294 61 aa8.45□□□□□ -1.06
CCDC28A-202ENST00000611852 TP53AIP1Q9HCN2 124 aa8.44□□□□□ -1.06
CCDC28A-202ENST00000611852 HRES1P13985 223 aa8.43□□□□□ -1.06
CCDC28A-202ENST00000611852 SPINK7P58062 85 aa8.43□□□□□ -1.06
CCDC28A-202ENST00000611852 C5orf47Q569G3 176 aa8.39□□□□□ -1.07
CCDC28A-202ENST00000611852 C20orf197Q8N268 126 aa8.39□□□□□ -1.07
CCDC28A-202ENST00000611852 MPLKIPQ8TAP9 179 aa8.39□□□□□ -1.07
CCDC28A-202ENST00000611852 Q5W150 140 aa8.38□□□□□ -1.07
CCDC28A-202ENST00000611852 MP68P56378 58 aa8.37□□□□□ -1.07
CCDC28A-202ENST00000611852 TRAV22A0A0B4J277 110 aa8.35□□□□□ -1.07
CCDC28A-202ENST00000611852 RBM12B-AS1Q9P1G2 102 aa8.35□□□□□ -1.07
CCDC28A-202ENST00000611852 H0Y9P7 68 aa8.34□□□□□ -1.07
CCDC28A-202ENST00000611852 KLKP1Q107X0 134 aa8.34□□□□□ -1.07
CCDC28A-202ENST00000611852 FAM236DA0A1B0GTK5 79 aa8.32□□□□□ -1.08
CCDC28A-202ENST00000611852 FAM236CP0DP71 79 aa8.32□□□□□ -1.08
CCDC28A-202ENST00000611852 SNURFQ9Y675 71 aa8.32□□□□□ -1.08
CCDC28A-202ENST00000611852 FLGP20930 4061 aaPredicted RBP8.31□□□□□ -1.08
CCDC28A-202ENST00000611852 H3BPC8 53 aa8.31□□□□□ -1.08
CCDC28A-202ENST00000611852 M0R2T5 61 aa8.3□□□□□ -1.08
CCDC28A-202ENST00000611852 NDUFC1O43677 76 aa8.29□□□□□ -1.08
CCDC28A-202ENST00000611852 IGKV2D-30A0A075B6S6 120 aa8.28□□□□□ -1.08
CCDC28A-202ENST00000611852 IGKV2-30P06310 120 aa8.28□□□□□ -1.08
CCDC28A-202ENST00000611852 LINC00208Q96KT6 92 aa8.28□□□□□ -1.08
CCDC28A-202ENST00000611852 CYSTM1Q9H1C7 97 aa8.27□□□□□ -1.09
CCDC28A-202ENST00000611852 C7orf65Q6ZTY9 151 aa8.26□□□□□ -1.09
CCDC28A-202ENST00000611852 C1orf64Q8NEQ6 169 aa8.25□□□□□ -1.09
CCDC28A-202ENST00000611852 KRTAP10-6P60371 365 aaPredicted RBP8.24□□□□□ -1.09
CCDC28A-202ENST00000611852 LORP23490 312 aaPredicted RBP8.23□□□□□ -1.09
CCDC28A-202ENST00000611852 H7BZZ5 65 aa8.21□□□□□ -1.1
CCDC28A-202ENST00000611852 TMEM258P61165 79 aa8.21□□□□□ -1.1
CCDC28A-202ENST00000611852 LOC101927531A0A1B0GV80 90 aa8.2□□□□□ -1.1
CCDC28A-202ENST00000611852 ATP5EP56381 51 aaPredicted RBP8.12□□□□□ -1.11
CCDC28A-202ENST00000611852 C4orf26Q17RF5 130 aa8.11□□□□□ -1.11
CCDC28A-202ENST00000611852 CYP4F30PQ9H0H9 118 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms