RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 MUC2Q02817 5179 aa6.48□□□□□ -1.37
LINC00539-204ENST00000608957 RPS29P62273 56 aaKnown RBP6.48□□□□□ -1.37
LINC00539-204ENST00000608957 ASB16-AS1Q495Z4 193 aa6.48□□□□□ -1.37
LINC00539-204ENST00000608957 LINC00472Q9H8W2 130 aa6.48□□□□□ -1.37
LINC00539-204ENST00000608957 Q96NJ1 140 aa6.47□□□□□ -1.37
LINC00539-204ENST00000608957 FP248Q71RG6 208 aaPredicted RBP6.46□□□□□ -1.38
LINC00539-204ENST00000608957 J3KT08 172 aa6.45□□□□□ -1.38
LINC00539-204ENST00000608957 DEFB116Q30KQ4 102 aa6.45□□□□□ -1.38
LINC00539-204ENST00000608957 KRTAP13-3Q3SY46 172 aa6.45□□□□□ -1.38
LINC00539-204ENST00000608957 DSCR10P59022 87 aa6.44□□□□□ -1.38
LINC00539-204ENST00000608957 IMUPQ9GZP8 106 aa6.44□□□□□ -1.38
LINC00539-204ENST00000608957 IGKV4-1P06312 121 aa6.43□□□□□ -1.38
LINC00539-204ENST00000608957 HIST1H4AP62805 103 aaKnown RBP6.42□□□□□ -1.38
LINC00539-204ENST00000608957 Q8N9L7 120 aa6.42□□□□□ -1.38
LINC00539-204ENST00000608957 A8MWP4 228 aa6.41□□□□□ -1.38
LINC00539-204ENST00000608957 K7EQZ3 153 aa6.41□□□□□ -1.38
LINC00539-204ENST00000608957 C1orf195Q5TG92 126 aa6.41□□□□□ -1.38
LINC00539-204ENST00000608957 A0A087WVE0 104 aa6.39□□□□□ -1.39
LINC00539-204ENST00000608957 NDUFB1O75438 58 aa6.38□□□□□ -1.39
LINC00539-204ENST00000608957 LCE2AQ5TA79 106 aaPredicted RBP6.38□□□□□ -1.39
LINC00539-204ENST00000608957 PRR15Q8IV56 129 aa6.38□□□□□ -1.39
LINC00539-204ENST00000608957 KRTAP4-1Q9BYQ7 146 aa6.38□□□□□ -1.39
LINC00539-204ENST00000608957 A0A1B0GVX0 72 aa6.36□□□□□ -1.39
LINC00539-204ENST00000608957 FAM236AA0A1B0GUQ0 79 aa6.35□□□□□ -1.39
LINC00539-204ENST00000608957 FAM236BA0A1B0GV22 79 aa6.35□□□□□ -1.39
LINC00539-204ENST00000608957 FAT4Q6V0I7 4981 aa6.34□□□□□ -1.39
LINC00539-204ENST00000608957 A0A0U1RQV1 116 aa6.34□□□□□ -1.39
LINC00539-204ENST00000608957 SCGB1A1P11684 91 aa6.34□□□□□ -1.39
LINC00539-204ENST00000608957 IGHV6-1A0A0B4J1U7 121 aa6.33□□□□□ -1.4
LINC00539-204ENST00000608957 XP32Q5T750 250 aa6.33□□□□□ -1.4
LINC00539-204ENST00000608957 HCG22E2RYF7 251 aa6.32□□□□□ -1.4
LINC00539-204ENST00000608957 MMP24-AS1A0A0U1RRL7 71 aa6.31□□□□□ -1.4
LINC00539-204ENST00000608957 C8orf17Q9NRJ1 99 aa6.31□□□□□ -1.4
LINC00539-204ENST00000608957 C8orf87E5RJ46 101 aa6.3□□□□□ -1.4
LINC00539-204ENST00000608957 WFDC13Q8IUB5 93 aa6.29□□□□□ -1.4
LINC00539-204ENST00000608957 SEC61BP60468 96 aaKnown RBP6.28□□□□□ -1.4
LINC00539-204ENST00000608957 CASC2Q6XLA1 102 aa6.28□□□□□ -1.4
LINC00539-204ENST00000608957 ATOX1O00244 68 aa6.27□□□□□ -1.41
LINC00539-204ENST00000608957 NOTCH2NLQ7Z3S9 236 aa6.27□□□□□ -1.41
LINC00539-204ENST00000608957 hDV103S1A0JD37 113 aa6.26□□□□□ -1.41
LINC00539-204ENST00000608957 C9orf92A6NGG3 77 aa6.26□□□□□ -1.41
LINC00539-204ENST00000608957 LINC00313P59037 77 aa6.26□□□□□ -1.41
LINC00539-204ENST00000608957 TMEM254Q8TBM7 123 aa6.25□□□□□ -1.41
LINC00539-204ENST00000608957 MRPL34Q9BQ48 92 aaKnown RBP6.23□□□□□ -1.41
LINC00539-204ENST00000608957 LCE2BO14633 110 aa6.22□□□□□ -1.41
LINC00539-204ENST00000608957 KRTAP16-1A8MUX0 517 aa6.21□□□□□ -1.42
LINC00539-204ENST00000608957 PCOTHQ58A44 107 aa6.21□□□□□ -1.42
LINC00539-204ENST00000608957 SMIM20Q8N5G0 67 aa6.21□□□□□ -1.42
LINC00539-204ENST00000608957 KRTAP19-2Q3LHN2 52 aa6.2□□□□□ -1.42
LINC00539-204ENST00000608957 ANAPC13Q9BS18 74 aa6.2□□□□□ -1.42
LINC00539-204ENST00000608957 KRTAP9-2Q9BYQ4 174 aa6.2□□□□□ -1.42
LINC00539-204ENST00000608957 OCR1Q9BZK8 76 aa6.2□□□□□ -1.42
LINC00539-204ENST00000608957 LCE2CQ5TA81 110 aa6.19□□□□□ -1.42
LINC00539-204ENST00000608957 TRAV7A0A075B6U4 112 aa6.18□□□□□ -1.42
LINC00539-204ENST00000608957 NDUFS5O43920 106 aa6.17□□□□□ -1.42
LINC00539-204ENST00000608957 SERP2Q8N6R1 65 aa6.17□□□□□ -1.42
LINC00539-204ENST00000608957 Q8N9P0 234 aaPredicted RBP6.16□□□□□ -1.42
LINC00539-204ENST00000608957 TP53AIP1Q9HCN2 124 aa6.15□□□□□ -1.42
LINC00539-204ENST00000608957 UQCRQO14949 82 aa6.14□□□□□ -1.43
LINC00539-204ENST00000608957 COX7CP15954 63 aa6.14□□□□□ -1.43
LINC00539-204ENST00000608957 RPL37P61927 97 aaKnown RBP6.14□□□□□ -1.43
LINC00539-204ENST00000608957 C20orf166-AS1Q96NR2 134 aa6.13□□□□□ -1.43
LINC00539-204ENST00000608957 A8MUU9 505 aa6.12□□□□□ -1.43
LINC00539-204ENST00000608957 PCP4P48539 62 aa6.12□□□□□ -1.43
LINC00539-204ENST00000608957 TRAV22A0A0B4J277 110 aa6.1□□□□□ -1.43
LINC00539-204ENST00000608957 H0Y9P7 68 aa6.09□□□□□ -1.43
LINC00539-204ENST00000608957 C5orf47Q569G3 176 aa6.09□□□□□ -1.43
LINC00539-204ENST00000608957 Q75L30 129 aa6.09□□□□□ -1.43
LINC00539-204ENST00000608957 MT1HP80294 61 aa6.08□□□□□ -1.44
LINC00539-204ENST00000608957 KRTAP9-6A0A140TA67 174 aa6.07□□□□□ -1.44
LINC00539-204ENST00000608957 CCDC179H3BU77 68 aa6.07□□□□□ -1.44
LINC00539-204ENST00000608957 MP68P56378 58 aa6.07□□□□□ -1.44
LINC00539-204ENST00000608957 Q5W150 140 aa6.06□□□□□ -1.44
LINC00539-204ENST00000608957 C20orf197Q8N268 126 aa6.06□□□□□ -1.44
LINC00539-204ENST00000608957 ZCCHC13Q8WW36 166 aaKnown RBP6.05□□□□□ -1.44
LINC00539-204ENST00000608957 H3BPC8 53 aa6.04□□□□□ -1.44
LINC00539-204ENST00000608957 FLGP20930 4061 aaPredicted RBP6.04□□□□□ -1.44
LINC00539-204ENST00000608957 LINC00208Q96KT6 92 aa6.03□□□□□ -1.44
LINC00539-204ENST00000608957 KLKP1Q107X0 134 aa6.02□□□□□ -1.45
LINC00539-204ENST00000608957 SNURFQ9Y675 71 aa6.02□□□□□ -1.45
LINC00539-204ENST00000608957 C1orf64Q8NEQ6 169 aa6.01□□□□□ -1.45
LINC00539-204ENST00000608957 LOC101927531A0A1B0GV80 90 aa5.99□□□□□ -1.45
LINC00539-204ENST00000608957 ATP11AUNQ6ZP68 121 aa5.99□□□□□ -1.45
LINC00539-204ENST00000608957 IGKV2-30P06310 120 aa5.97□□□□□ -1.45
LINC00539-204ENST00000608957 LORP23490 312 aaPredicted RBP5.97□□□□□ -1.45
LINC00539-204ENST00000608957 CYSTM1Q9H1C7 97 aa5.97□□□□□ -1.45
LINC00539-204ENST00000608957 KRTAP10-6P60371 365 aaPredicted RBP5.96□□□□□ -1.46
LINC00539-204ENST00000608957 IGKV2D-30A0A075B6S6 120 aa5.95□□□□□ -1.46
LINC00539-204ENST00000608957 NDUFC1O43677 76 aa5.95□□□□□ -1.46
LINC00539-204ENST00000608957 C7orf65Q6ZTY9 151 aa5.95□□□□□ -1.46
LINC00539-204ENST00000608957 CYP4F30PQ9H0H9 118 aa5.94□□□□□ -1.46
LINC00539-204ENST00000608957 COX6B2Q6YFQ2 88 aa5.93□□□□□ -1.46
LINC00539-204ENST00000608957 H7BZZ5 65 aa5.92□□□□□ -1.46
LINC00539-204ENST00000608957 SPINK7P58062 85 aa5.89□□□□□ -1.47
LINC00539-204ENST00000608957 M0R2T5 61 aa5.88□□□□□ -1.47
LINC00539-204ENST00000608957 TMEM258P61165 79 aa5.87□□□□□ -1.47
LINC00539-204ENST00000608957 HRES1P13985 223 aa5.85□□□□□ -1.47
LINC00539-204ENST00000608957 SPANXA2-OT1Q8N9U9 137 aa5.84□□□□□ -1.47
LINC00539-204ENST00000608957 CRCT1Q9UGL9 99 aa5.84□□□□□ -1.47
LINC00539-204ENST00000608957 FSIP2Q5CZC0 6907 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms