RNA–Protein interactions for RNA: ENST00000602574.5

COMMD3-215, Transcript of COMM domain containing 3, humanhuman

TSL 1 (best)

Gene COMMD3, Length 2,290 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-215ENST00000602574 UTP20O75691 2785 aaKnown RBP4.64□□□□□ -1.67
COMMD3-215ENST00000602574 Q6ZRN7 208 aaPredicted RBP4.63□□□□□ -1.67
COMMD3-215ENST00000602574 SPACA4Q8TDM5 124 aa4.63□□□□□ -1.67
COMMD3-215ENST00000602574 ITPR3Q14573 2671 aa4.63□□□□□ -1.67
COMMD3-215ENST00000602574 ZFYVE26Q68DK2 2539 aa4.62□□□□□ -1.67
COMMD3-215ENST00000602574 Q8N1X5 172 aa4.62□□□□□ -1.67
COMMD3-215ENST00000602574 FBN2P35556 2912 aa4.62□□□□□ -1.67
COMMD3-215ENST00000602574 EPG5Q9HCE0 2579 aa4.62□□□□□ -1.67
COMMD3-215ENST00000602574 ZANQ9Y493 2812 aa4.62□□□□□ -1.67
COMMD3-215ENST00000602574 PKD1L2Q7Z442 2459 aa4.6□□□□□ -1.67
COMMD3-215ENST00000602574 ACACBO00763 2458 aa4.6□□□□□ -1.67
COMMD3-215ENST00000602574 GCN1Q92616 2671 aaKnown RBP4.6□□□□□ -1.67
COMMD3-215ENST00000602574 UBE2DNLQ8IWF7 75 aa4.6□□□□□ -1.67
COMMD3-215ENST00000602574 S4R3F8 94 aa4.6□□□□□ -1.67
COMMD3-215ENST00000602574 KRTAP23-1A1A580 65 aa4.58□□□□□ -1.68
COMMD3-215ENST00000602574 KRTAP4-8Q9BYQ9 185 aa4.58□□□□□ -1.68
COMMD3-215ENST00000602574 UBR5O95071 2799 aaPredicted RBP4.58□□□□□ -1.68
COMMD3-215ENST00000602574 KRTAP1-5Q9BYS1 174 aa4.57□□□□□ -1.68
COMMD3-215ENST00000602574 DNAH1Q9P2D7 4330 aa4.57□□□□□ -1.68
COMMD3-215ENST00000602574 SMR3AQ99954 134 aa4.56□□□□□ -1.68
COMMD3-215ENST00000602574 APLNQ9ULZ1 77 aa4.56□□□□□ -1.68
COMMD3-215ENST00000602574 SONP18583 2426 aaKnown RBP4.56□□□□□ -1.68
COMMD3-215ENST00000602574 CFAP46Q8IYW2 2715 aa4.56□□□□□ -1.68
COMMD3-215ENST00000602574 INE1O15225 51 aa4.56□□□□□ -1.68
COMMD3-215ENST00000602574 PIEZO1Q92508 2521 aa4.55□□□□□ -1.68
COMMD3-215ENST00000602574 J3QKU1 62 aa4.55□□□□□ -1.68
COMMD3-215ENST00000602574 NF1P21359 2839 aa4.54□□□□□ -1.68
COMMD3-215ENST00000602574 R4GN34 69 aa4.54□□□□□ -1.68
COMMD3-215ENST00000602574 FLNCQ14315 2725 aa4.54□□□□□ -1.68
COMMD3-215ENST00000602574 FLNAP21333 2647 aaKnown RBP4.54□□□□□ -1.68
COMMD3-215ENST00000602574 FAM208BQ5VWN6 2430 aa4.53□□□□□ -1.68
COMMD3-215ENST00000602574 POLQO75417 2590 aa4.53□□□□□ -1.68
COMMD3-215ENST00000602574 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.52□□□□□ -1.69
COMMD3-215ENST00000602574 KRTAP10-6P60371 365 aaPredicted RBP4.52□□□□□ -1.69
COMMD3-215ENST00000602574 KRTAP13-4Q3LI77 160 aa4.51□□□□□ -1.69
COMMD3-215ENST00000602574 CACNA1AO00555 2505 aa4.51□□□□□ -1.69
COMMD3-215ENST00000602574 IGSF10Q6WRI0 2623 aa4.51□□□□□ -1.69
COMMD3-215ENST00000602574 F8P00451 2351 aa4.51□□□□□ -1.69
COMMD3-215ENST00000602574 NBEAL2Q6ZNJ1 2754 aa4.5□□□□□ -1.69
COMMD3-215ENST00000602574 MYO18BQ8IUG5 2567 aa4.5□□□□□ -1.69
COMMD3-215ENST00000602574 CENPEQ02224 2701 aa4.5□□□□□ -1.69
COMMD3-215ENST00000602574 CSMD2Q7Z408 3487 aa4.5□□□□□ -1.69
COMMD3-215ENST00000602574 KRTAP9-2Q9BYQ4 174 aa4.49□□□□□ -1.69
COMMD3-215ENST00000602574 KRTAP3-1Q9BYR8 98 aa4.49□□□□□ -1.69
COMMD3-215ENST00000602574 ABCA12Q86UK0 2595 aa4.48□□□□□ -1.69
COMMD3-215ENST00000602574 HIVEP1P15822 2718 aa4.48□□□□□ -1.69
COMMD3-215ENST00000602574 NOTCH2Q04721 2471 aa4.48□□□□□ -1.69
COMMD3-215ENST00000602574 A0A0D9SG42 100 aa4.47□□□□□ -1.69
COMMD3-215ENST00000602574 KRTAP9-6A0A140TA67 174 aa4.47□□□□□ -1.69
COMMD3-215ENST00000602574 PDZD2O15018 2839 aa4.47□□□□□ -1.69
COMMD3-215ENST00000602574 CCDC168Q8NDH2 2452 aa4.46□□□□□ -1.7
COMMD3-215ENST00000602574 UNC79Q9P2D8 2635 aa4.46□□□□□ -1.7
COMMD3-215ENST00000602574 KRTAP12-2P59991 146 aa4.45□□□□□ -1.7
COMMD3-215ENST00000602574 ZNF462Q96JM2 2506 aa4.45□□□□□ -1.7
COMMD3-215ENST00000602574 USP24Q9UPU5 2620 aa4.44□□□□□ -1.7
COMMD3-215ENST00000602574 KRTAP12-1P59990 96 aa4.43□□□□□ -1.7
COMMD3-215ENST00000602574 RPS29P62273 56 aaKnown RBP4.43□□□□□ -1.7
COMMD3-215ENST00000602574 FBN1P35555 2871 aaKnown RBP4.43□□□□□ -1.7
COMMD3-215ENST00000602574 ZNF469Q96JG9 3925 aaPredicted RBP4.41□□□□□ -1.7
COMMD3-215ENST00000602574 NIPBLQ6KC79 2804 aaeCLIP4.4□□□□□ -1.7
COMMD3-215ENST00000602574 SETD2Q9BYW2 2564 aaPredicted RBP4.4□□□□□ -1.7
COMMD3-215ENST00000602574 MTORP42345 2549 aa4.39□□□□□ -1.71
COMMD3-215ENST00000602574 DNAH3Q8TD57 4116 aa4.39□□□□□ -1.71
COMMD3-215ENST00000602574 PP632Q6XCG6 107 aa4.39□□□□□ -1.71
COMMD3-215ENST00000602574 VWFP04275 2813 aa4.38□□□□□ -1.71
COMMD3-215ENST00000602574 SPRR5A0A1B0GTR4 108 aa4.38□□□□□ -1.71
COMMD3-215ENST00000602574 ACANP16112 2415 aa4.37□□□□□ -1.71
COMMD3-215ENST00000602574 ANK2Q01484 3957 aa4.34□□□□□ -1.71
COMMD3-215ENST00000602574 TEP1Q99973 2627 aaKnown RBP4.34□□□□□ -1.71
COMMD3-215ENST00000602574 KRTAP10-8P60410 259 aa4.34□□□□□ -1.72
COMMD3-215ENST00000602574 KRTAP13-2Q52LG2 175 aa4.34□□□□□ -1.72
COMMD3-215ENST00000602574 MEGF8Q7Z7M0 2845 aa4.34□□□□□ -1.72
COMMD3-215ENST00000602574 CUBNO60494 3623 aa4.33□□□□□ -1.72
COMMD3-215ENST00000602574 TENM4Q6N022 2769 aa4.33□□□□□ -1.72
COMMD3-215ENST00000602574 DYNC2H1Q8NCM8 4307 aaKnown RBP4.32□□□□□ -1.72
COMMD3-215ENST00000602574 VPS13DQ5THJ4 4388 aa4.31□□□□□ -1.72
COMMD3-215ENST00000602574 TENM3Q9P273 2699 aa4.31□□□□□ -1.72
COMMD3-215ENST00000602574 KRTAP4-8A0A0G2JLE6 195 aa4.3□□□□□ -1.72
COMMD3-215ENST00000602574 LCE3BQ5TA77 95 aa4.3□□□□□ -1.72
COMMD3-215ENST00000602574 SRRM2Q9UQ35 2752 aaKnown RBP4.29□□□□□ -1.72
COMMD3-215ENST00000602574 NSD1Q96L73 2696 aaPredicted RBP4.28□□□□□ -1.72
COMMD3-215ENST00000602574 M0QZ58 72 aa4.28□□□□□ -1.72
COMMD3-215ENST00000602574 HUWE1Q7Z6Z7 4374 aaKnown RBP4.27□□□□□ -1.73
COMMD3-215ENST00000602574 HELZ2Q9BYK8 2649 aaKnown RBP4.27□□□□□ -1.73
COMMD3-215ENST00000602574 KRTAP1-4P0C5Y4 121 aa4.26□□□□□ -1.73
COMMD3-215ENST00000602574 KRTAP9-9Q9BYP9 154 aa4.26□□□□□ -1.73
COMMD3-215ENST00000602574 KRTAP9-4Q9BYQ2 154 aa4.26□□□□□ -1.73
COMMD3-215ENST00000602574 ITPR2Q14571 2701 aa4.26□□□□□ -1.73
COMMD3-215ENST00000602574 PKD1L1Q8TDX9 2849 aa4.26□□□□□ -1.73
COMMD3-215ENST00000602574 HECTD1Q9ULT8 2610 aa4.26□□□□□ -1.73
COMMD3-215ENST00000602574 COL6A5A8TX70 2615 aa4.25□□□□□ -1.73
COMMD3-215ENST00000602574 CMYA5Q8N3K9 4069 aa4.24□□□□□ -1.73
COMMD3-215ENST00000602574 FRAS1Q86XX4 4008 aa4.24□□□□□ -1.73
COMMD3-215ENST00000602574 ATRQ13535 2644 aa4.24□□□□□ -1.73
COMMD3-215ENST00000602574 DNAH10Q8IVF4 4471 aa4.23□□□□□ -1.73
COMMD3-215ENST00000602574 MAST4O15021 2626 aa4.23□□□□□ -1.73
COMMD3-215ENST00000602574 CSMD3Q7Z407 3707 aa4.22□□□□□ -1.73
COMMD3-215ENST00000602574 TENM1Q9UKZ4 2725 aa4.22□□□□□ -1.73
COMMD3-215ENST00000602574 DNAH9Q9NYC9 4486 aa4.22□□□□□ -1.73
COMMD3-215ENST00000602574 TRRAPQ9Y4A5 3859 aa4.21□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 1968.2 ms