RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 SPCS1Q9Y6A9 102 aa10.26□□□□□ -0.77
UPF1-212ENST00000601689 A8MUU9 505 aa10.25□□□□□ -0.77
UPF1-212ENST00000601689 C8orf87E5RJ46 101 aa10.25□□□□□ -0.77
UPF1-212ENST00000601689 LCE2AQ5TA79 106 aaPredicted RBP10.24□□□□□ -0.77
UPF1-212ENST00000601689 A0A1B0GVX0 72 aa10.22□□□□□ -0.77
UPF1-212ENST00000601689 NREPQ16612 68 aa10.21□□□□□ -0.77
UPF1-212ENST00000601689 MTURNQ8N3F0 131 aa10.2□□□□□ -0.78
UPF1-212ENST00000601689 COX6B2Q6YFQ2 88 aa10.19□□□□□ -0.78
UPF1-212ENST00000601689 PCP4L1A6NKN8 68 aa10.15□□□□□ -0.78
UPF1-212ENST00000601689 A8MWP4 228 aa10.14□□□□□ -0.79
UPF1-212ENST00000601689 KRTAP16-1A8MUX0 517 aa10.13□□□□□ -0.79
UPF1-212ENST00000601689 NOTCH2NLQ7Z3S9 236 aa10.13□□□□□ -0.79
UPF1-212ENST00000601689 GTF2H5Q6ZYL4 71 aa10.11□□□□□ -0.79
UPF1-212ENST00000601689 K7EP34 96 aa10.09□□□□□ -0.79
UPF1-212ENST00000601689 C8orf17Q9NRJ1 99 aa10.06□□□□□ -0.8
UPF1-212ENST00000601689 LCE2CQ5TA81 110 aa10.05□□□□□ -0.8
UPF1-212ENST00000601689 IGKV3D-7A0A0C4DH55 119 aa10.04□□□□□ -0.8
UPF1-212ENST00000601689 KRTAP19-2Q3LHN2 52 aa10.04□□□□□ -0.8
UPF1-212ENST00000601689 PRR15Q8IV56 129 aa10.04□□□□□ -0.8
UPF1-212ENST00000601689 BPY2O14599 106 aa10.03□□□□□ -0.8
UPF1-212ENST00000601689 M0R2T5 61 aa10.02□□□□□ -0.81
UPF1-212ENST00000601689 SMCPP49901 116 aaPredicted RBP10.01□□□□□ -0.81
UPF1-212ENST00000601689 Q6ZVQ6 151 aa10□□□□□ -0.81
UPF1-212ENST00000601689 MT1HP80294 61 aa9.99□□□□□ -0.81
UPF1-212ENST00000601689 Q8N9P0 234 aaPredicted RBP9.99□□□□□ -0.81
UPF1-212ENST00000601689 F8W1H4 67 aa9.98□□□□□ -0.81
UPF1-212ENST00000601689 ZCCHC13Q8WW36 166 aaKnown RBP9.98□□□□□ -0.81
UPF1-212ENST00000601689 PRO0461Q9UI25 63 aa9.98□□□□□ -0.81
UPF1-212ENST00000601689 UBL5Q9BZL1 73 aa9.97□□□□□ -0.81
UPF1-212ENST00000601689 RBM12B-AS1Q9P1G2 102 aa9.97□□□□□ -0.81
UPF1-212ENST00000601689 FAM236DA0A1B0GTK5 79 aa9.94□□□□□ -0.82
UPF1-212ENST00000601689 FAM236CP0DP71 79 aa9.94□□□□□ -0.82
UPF1-212ENST00000601689 TMEM254Q8TBM7 123 aa9.94□□□□□ -0.82
UPF1-212ENST00000601689 MRPL34Q9BQ48 92 aaKnown RBP9.94□□□□□ -0.82
UPF1-212ENST00000601689 hDV103S1A0JD37 113 aa9.93□□□□□ -0.82
UPF1-212ENST00000601689 K7EQZ3 153 aa9.93□□□□□ -0.82
UPF1-212ENST00000601689 MMP24-AS1A0A0U1RRL7 71 aa9.9□□□□□ -0.82
UPF1-212ENST00000601689 NDUFS5O43920 106 aa9.9□□□□□ -0.82
UPF1-212ENST00000601689 LINC00846Q9NV44 126 aa9.86□□□□□ -0.83
UPF1-212ENST00000601689 SPINK7P58062 85 aa9.85□□□□□ -0.83
UPF1-212ENST00000601689 ETDBQ3ZM63 59 aa9.85□□□□□ -0.83
UPF1-212ENST00000601689 KRTAP9-2Q9BYQ4 174 aa9.85□□□□□ -0.83
UPF1-212ENST00000601689 CASC2Q6XLA1 102 aa9.82□□□□□ -0.84
UPF1-212ENST00000601689 FLGP20930 4061 aaPredicted RBP9.81□□□□□ -0.84
UPF1-212ENST00000601689 HRES1P13985 223 aa9.81□□□□□ -0.84
UPF1-212ENST00000601689 WFDC13Q8IUB5 93 aa9.81□□□□□ -0.84
UPF1-212ENST00000601689 Q8N9L7 120 aa9.79□□□□□ -0.84
UPF1-212ENST00000601689 KRTAP10-6P60371 365 aaPredicted RBP9.78□□□□□ -0.84
UPF1-212ENST00000601689 MPLKIPQ8TAP9 179 aa9.75□□□□□ -0.85
UPF1-212ENST00000601689 LORP23490 312 aaPredicted RBP9.74□□□□□ -0.85
UPF1-212ENST00000601689 HCG22E2RYF7 251 aa9.73□□□□□ -0.85
UPF1-212ENST00000601689 ACYP1P07311 99 aa9.73□□□□□ -0.85
UPF1-212ENST00000601689 CXCL6P80162 114 aa9.73□□□□□ -0.85
UPF1-212ENST00000601689 LCE2DQ5TA82 110 aaPredicted RBP9.7□□□□□ -0.86
UPF1-212ENST00000601689 C7orf65Q6ZTY9 151 aa9.66□□□□□ -0.86
UPF1-212ENST00000601689 IGKV2D-30A0A075B6S6 120 aa9.65□□□□□ -0.86
UPF1-212ENST00000601689 IGKV2-30P06310 120 aa9.65□□□□□ -0.86
UPF1-212ENST00000601689 FAM240AA0A1B0GVK7 77 aa9.63□□□□□ -0.87
UPF1-212ENST00000601689 TP53AIP1Q9HCN2 124 aa9.61□□□□□ -0.87
UPF1-212ENST00000601689 Q5W150 140 aa9.6□□□□□ -0.87
UPF1-212ENST00000601689 ATP5EP2Q5VTU8 51 aa9.58□□□□□ -0.88
UPF1-212ENST00000601689 A0A1B0GV90 55 aa9.54□□□□□ -0.88
UPF1-212ENST00000601689 HIST1H4AP62805 103 aaKnown RBP9.51□□□□□ -0.89
UPF1-212ENST00000601689 H1FX-AS1Q4G0G2 97 aa9.5□□□□□ -0.89
UPF1-212ENST00000601689 KRTAP9-6A0A140TA67 174 aa9.47□□□□□ -0.89
UPF1-212ENST00000601689 J3QR89 54 aa9.47□□□□□ -0.89
UPF1-212ENST00000601689 KRTAP9-8Q9BYQ0 159 aa9.46□□□□□ -0.9
UPF1-212ENST00000601689 LINC00643Q86TS7 51 aa9.45□□□□□ -0.9
UPF1-212ENST00000601689 C4orf26Q17RF5 130 aa9.42□□□□□ -0.9
UPF1-212ENST00000601689 FSIP2Q5CZC0 6907 aa9.42□□□□□ -0.9
UPF1-212ENST00000601689 TRAV22A0A0B4J277 110 aa9.37□□□□□ -0.91
UPF1-212ENST00000601689 KRTAP10-10P60014 251 aa9.37□□□□□ -0.91
UPF1-212ENST00000601689 CRCT1Q9UGL9 99 aa9.37□□□□□ -0.91
UPF1-212ENST00000601689 MT2AP02795 61 aa9.35□□□□□ -0.91
UPF1-212ENST00000601689 UQCRQO14949 82 aa9.34□□□□□ -0.91
UPF1-212ENST00000601689 LOC101927531A0A1B0GV80 90 aa9.33□□□□□ -0.92
UPF1-212ENST00000601689 C1orf64Q8NEQ6 169 aa9.32□□□□□ -0.92
UPF1-212ENST00000601689 ATOX1O00244 68 aa9.31□□□□□ -0.92
UPF1-212ENST00000601689 CYP4F30PQ9H0H9 118 aa9.28□□□□□ -0.92
UPF1-212ENST00000601689 A0A087WVE0 104 aa9.27□□□□□ -0.93
UPF1-212ENST00000601689 MT1FP04733 61 aa9.27□□□□□ -0.93
UPF1-212ENST00000601689 H0Y9P7 68 aa9.25□□□□□ -0.93
UPF1-212ENST00000601689 S4R3F8 94 aa9.24□□□□□ -0.93
UPF1-212ENST00000601689 MP68P56378 58 aa9.19□□□□□ -0.94
UPF1-212ENST00000601689 SCGB1A1P11684 91 aa9.17□□□□□ -0.94
UPF1-212ENST00000601689 C5orf47Q569G3 176 aa9.17□□□□□ -0.94
UPF1-212ENST00000601689 CSAG1Q6PB30 78 aa9.17□□□□□ -0.94
UPF1-212ENST00000601689 KRTAP3-1Q9BYR8 98 aa9.16□□□□□ -0.94
UPF1-212ENST00000601689 KRTAP9-3Q9BYQ3 159 aa9.15□□□□□ -0.94
UPF1-212ENST00000601689 K7ERU9 68 aa9.13□□□□□ -0.95
UPF1-212ENST00000601689 LINC00208Q96KT6 92 aa9.13□□□□□ -0.95
UPF1-212ENST00000601689 LCA10Q71F78 164 aa9.11□□□□□ -0.95
UPF1-212ENST00000601689 OCR1Q9BZK8 76 aa9.1□□□□□ -0.95
UPF1-212ENST00000601689 FAM236AA0A1B0GUQ0 79 aa9.08□□□□□ -0.96
UPF1-212ENST00000601689 FAM236BA0A1B0GV22 79 aa9.08□□□□□ -0.96
UPF1-212ENST00000601689 IMUPQ9GZP8 106 aa9.07□□□□□ -0.96
UPF1-212ENST00000601689 H3BPC8 53 aa9.06□□□□□ -0.96
UPF1-212ENST00000601689 A8MUN3 132 aa9.04□□□□□ -0.96
UPF1-212ENST00000601689 LCE2BO14633 110 aa9.04□□□□□ -0.96
UPF1-212ENST00000601689 USH2AO75445 5202 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms