RNA–Protein interactions for RNA: ENST00000600026.5

LTBP4-227, Transcript of latent transforming growth factor beta binding protein 4, human

TSL 3

Gene LTBP4, Length 723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LTBP4-227	ENST00000600026	KRTAP13-3	Q3SY46	172 aa		12.18	□□□□□ -0.46
LTBP4-227	ENST00000600026	NDUFB1	O75438	58 aa		12.17	□□□□□ -0.46
LTBP4-227	ENST00000600026	CDIP1	Q9H305	208 aa		12.14	□□□□□ -0.47
LTBP4-227	ENST00000600026		A8MWP4	228 aa		12.12	□□□□□ -0.47
LTBP4-227	ENST00000600026		A0A1B0GVX0	72 aa		12.1	□□□□□ -0.47
LTBP4-227	ENST00000600026	DSCR10	P59022	87 aa		12.1	□□□□□ -0.47
LTBP4-227	ENST00000600026	MUC17	Q685J3	4493 aa		12.09	□□□□□ -0.47
LTBP4-227	ENST00000600026	IGHV6-1	A0A0B4J1U7	121 aa		12.09	□□□□□ -0.47
LTBP4-227	ENST00000600026	CXCL6	P80162	114 aa		12.08	□□□□□ -0.48
LTBP4-227	ENST00000600026	LINC00643	Q86TS7	51 aa		12.08	□□□□□ -0.48
LTBP4-227	ENST00000600026	IGKV3D-7	A0A0C4DH55	119 aa		12.07	□□□□□ -0.48
LTBP4-227	ENST00000600026	C9orf92	A6NGG3	77 aa		12.07	□□□□□ -0.48
LTBP4-227	ENST00000600026	ATP5EP2	Q5VTU8	51 aa		12.07	□□□□□ -0.48
LTBP4-227	ENST00000600026	PRR15	Q8IV56	129 aa		12.06	□□□□□ -0.48
LTBP4-227	ENST00000600026	C8orf87	E5RJ46	101 aa		12.05	□□□□□ -0.48
LTBP4-227	ENST00000600026	KRTAP9-2	Q9BYQ4	174 aa		12.05	□□□□□ -0.48
LTBP4-227	ENST00000600026	LINC00313	P59037	77 aa		12.04	□□□□□ -0.48
LTBP4-227	ENST00000600026		K7EQZ3	153 aa		12.03	□□□□□ -0.48
LTBP4-227	ENST00000600026	XP32	Q5T750	250 aa		12	□□□□□ -0.49
LTBP4-227	ENST00000600026		Q8N9L7	120 aa		12	□□□□□ -0.49
LTBP4-227	ENST00000600026	C8orf17	Q9NRJ1	99 aa		11.98	□□□□□ -0.49
LTBP4-227	ENST00000600026	NOTCH2NL	Q7Z3S9	236 aa		11.96	□□□□□ -0.49
LTBP4-227	ENST00000600026	MMP24-AS1	A0A0U1RRL7	71 aa		11.91	□□□□□ -0.5
LTBP4-227	ENST00000600026	MUC2	Q02817	5179 aa		11.9	□□□□□ -0.5
LTBP4-227	ENST00000600026	HIST1H4A	P62805	103 aa	Known RBP	11.9	□□□□□ -0.5
LTBP4-227	ENST00000600026	KRTAP16-1	A8MUX0	517 aa		11.88	□□□□□ -0.51
LTBP4-227	ENST00000600026	hDV103S1	A0JD37	113 aa		11.87	□□□□□ -0.51
LTBP4-227	ENST00000600026	KRTAP9-6	A0A140TA67	174 aa		11.86	□□□□□ -0.51
LTBP4-227	ENST00000600026	HCG22	E2RYF7	251 aa		11.86	□□□□□ -0.51
LTBP4-227	ENST00000600026	WFDC13	Q8IUB5	93 aa		11.86	□□□□□ -0.51
LTBP4-227	ENST00000600026	TMEM254	Q8TBM7	123 aa		11.86	□□□□□ -0.51
LTBP4-227	ENST00000600026	CASC2	Q6XLA1	102 aa		11.85	□□□□□ -0.51
LTBP4-227	ENST00000600026	SEC61B	P60468	96 aa	Known RBP	11.84	□□□□□ -0.51
LTBP4-227	ENST00000600026	MRPL34	Q9BQ48	92 aa	Known RBP	11.83	□□□□□ -0.52
LTBP4-227	ENST00000600026		Q75L30	129 aa		11.82	□□□□□ -0.52
LTBP4-227	ENST00000600026	C20orf166-AS1	Q96NR2	134 aa		11.82	□□□□□ -0.52
LTBP4-227	ENST00000600026		A8MUU9	505 aa		11.81	□□□□□ -0.52
LTBP4-227	ENST00000600026	RPL37	P61927	97 aa	Known RBP	11.81	□□□□□ -0.52
LTBP4-227	ENST00000600026	MT-ATP8	P03928	68 aa		11.8	□□□□□ -0.52
LTBP4-227	ENST00000600026	FAT4	Q6V0I7	4981 aa		11.78	□□□□□ -0.52
LTBP4-227	ENST00000600026		Q8N9P0	234 aa	Predicted RBP	11.77	□□□□□ -0.53
LTBP4-227	ENST00000600026	IMUP	Q9GZP8	106 aa		11.77	□□□□□ -0.53
LTBP4-227	ENST00000600026		A0A087WVE0	104 aa		11.76	□□□□□ -0.53
LTBP4-227	ENST00000600026	NDUFS5	O43920	106 aa		11.74	□□□□□ -0.53
LTBP4-227	ENST00000600026	PCOTH	Q58A44	107 aa		11.73	□□□□□ -0.53
LTBP4-227	ENST00000600026	ATP11AUN	Q6ZP68	121 aa		11.72	□□□□□ -0.53
LTBP4-227	ENST00000600026	KRTAP4-1	Q9BYQ7	146 aa		11.67	□□□□□ -0.54
LTBP4-227	ENST00000600026	LCE2A	Q5TA79	106 aa	Predicted RBP	11.65	□□□□□ -0.54
LTBP4-227	ENST00000600026	ZCCHC13	Q8WW36	166 aa	Known RBP	11.62	□□□□□ -0.55
LTBP4-227	ENST00000600026	TP53AIP1	Q9HCN2	124 aa		11.61	□□□□□ -0.55
LTBP4-227	ENST00000600026	SCGB1A1	P11684	91 aa		11.58	□□□□□ -0.56
LTBP4-227	ENST00000600026	FAM236A	A0A1B0GUQ0	79 aa		11.54	□□□□□ -0.56
LTBP4-227	ENST00000600026	FAM236B	A0A1B0GV22	79 aa		11.54	□□□□□ -0.56
LTBP4-227	ENST00000600026	UQCRQ	O14949	82 aa		11.49	□□□□□ -0.57
LTBP4-227	ENST00000600026		Q5W150	140 aa		11.49	□□□□□ -0.57
LTBP4-227	ENST00000600026		A0A0U1RQV1	116 aa		11.47	□□□□□ -0.57
LTBP4-227	ENST00000600026	OCR1	Q9BZK8	76 aa		11.45	□□□□□ -0.58
LTBP4-227	ENST00000600026	SMIM20	Q8N5G0	67 aa		11.44	□□□□□ -0.58
LTBP4-227	ENST00000600026	TRAV22	A0A0B4J277	110 aa		11.42	□□□□□ -0.58
LTBP4-227	ENST00000600026	ATOX1	O00244	68 aa		11.42	□□□□□ -0.58
LTBP4-227	ENST00000600026		H0Y9P7	68 aa		11.37	□□□□□ -0.59
LTBP4-227	ENST00000600026	SPINK7	P58062	85 aa		11.37	□□□□□ -0.59
LTBP4-227	ENST00000600026	IGKV2D-30	A0A075B6S6	120 aa		11.35	□□□□□ -0.59
LTBP4-227	ENST00000600026	TRAV7	A0A075B6U4	112 aa		11.35	□□□□□ -0.59
LTBP4-227	ENST00000600026	IGKV2-30	P06310	120 aa		11.35	□□□□□ -0.59
LTBP4-227	ENST00000600026	C5orf47	Q569G3	176 aa		11.35	□□□□□ -0.59
LTBP4-227	ENST00000600026	MP68	P56378	58 aa		11.34	□□□□□ -0.59
LTBP4-227	ENST00000600026	C7orf65	Q6ZTY9	151 aa		11.34	□□□□□ -0.59
LTBP4-227	ENST00000600026	KRTAP19-2	Q3LHN2	52 aa		11.32	□□□□□ -0.6
LTBP4-227	ENST00000600026	LOC101927531	A0A1B0GV80	90 aa		11.29	□□□□□ -0.6
LTBP4-227	ENST00000600026	FSIP2	Q5CZC0	6907 aa		11.26	□□□□□ -0.61
LTBP4-227	ENST00000600026		H3BPC8	53 aa		11.26	□□□□□ -0.61
LTBP4-227	ENST00000600026	LINC00208	Q96KT6	92 aa		11.26	□□□□□ -0.61
LTBP4-227	ENST00000600026	LCE2C	Q5TA81	110 aa		11.25	□□□□□ -0.61
LTBP4-227	ENST00000600026	SERP2	Q8N6R1	65 aa		11.25	□□□□□ -0.61
LTBP4-227	ENST00000600026	C1orf64	Q8NEQ6	169 aa		11.25	□□□□□ -0.61
LTBP4-227	ENST00000600026	CRCT1	Q9UGL9	99 aa		11.24	□□□□□ -0.61
LTBP4-227	ENST00000600026	HRES1	P13985	223 aa		11.22	□□□□□ -0.61
LTBP4-227	ENST00000600026	CYP4F30P	Q9H0H9	118 aa		11.21	□□□□□ -0.61
LTBP4-227	ENST00000600026	LCE2D	Q5TA82	110 aa	Predicted RBP	11.18	□□□□□ -0.62
LTBP4-227	ENST00000600026	COX6B2	Q6YFQ2	88 aa		11.18	□□□□□ -0.62
LTBP4-227	ENST00000600026	RBM12B-AS1	Q9P1G2	102 aa		11.18	□□□□□ -0.62
LTBP4-227	ENST00000600026	MPLKIP	Q8TAP9	179 aa		11.13	□□□□□ -0.63
LTBP4-227	ENST00000600026	ANAPC13	Q9BS18	74 aa		11.13	□□□□□ -0.63
LTBP4-227	ENST00000600026	COX7C	P15954	63 aa		11.11	□□□□□ -0.63
LTBP4-227	ENST00000600026	FAM236D	A0A1B0GTK5	79 aa		11.1	□□□□□ -0.63
LTBP4-227	ENST00000600026	FAM236C	P0DP71	79 aa		11.1	□□□□□ -0.63
LTBP4-227	ENST00000600026	MT1H	P80294	61 aa		11.09	□□□□□ -0.63
LTBP4-227	ENST00000600026	FLG	P20930	4061 aa	Predicted RBP	11.08	□□□□□ -0.64
LTBP4-227	ENST00000600026	C20orf197	Q8N268	126 aa		11.07	□□□□□ -0.64
LTBP4-227	ENST00000600026	C4orf26	Q17RF5	130 aa		11.05	□□□□□ -0.64
LTBP4-227	ENST00000600026	KLKP1	Q107X0	134 aa		11.04	□□□□□ -0.64
LTBP4-227	ENST00000600026	SNURF	Q9Y675	71 aa		11.04	□□□□□ -0.64
LTBP4-227	ENST00000600026		M0R2T5	61 aa		10.91	□□□□□ -0.66
LTBP4-227	ENST00000600026	H1FX-AS1	Q4G0G2	97 aa		10.9	□□□□□ -0.66
LTBP4-227	ENST00000600026	NDUFC1	O43677	76 aa		10.86	□□□□□ -0.67
LTBP4-227	ENST00000600026	KRTAP3-1	Q9BYR8	98 aa		10.86	□□□□□ -0.67
LTBP4-227	ENST00000600026	CCDC179	H3BU77	68 aa		10.85	□□□□□ -0.67
LTBP4-227	ENST00000600026		A8MUN3	132 aa		10.84	□□□□□ -0.67
LTBP4-227	ENST00000600026	KRTAP10-6	P60371	365 aa	Predicted RBP	10.79	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms