RNA–Protein interactions for RNA: ENST00000598309.1

USHBP1-208, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-208ENST00000598309 C8orf87E5RJ46 101 aa8.6□□□□□ -1.03
USHBP1-208ENST00000598309 BATFQ16520 125 aa8.6□□□□□ -1.03
USHBP1-208ENST00000598309 LCE2DQ5TA82 110 aaPredicted RBP8.6□□□□□ -1.03
USHBP1-208ENST00000598309 A0A1B0GVX0 72 aa8.59□□□□□ -1.03
USHBP1-208ENST00000598309 PDE6GP18545 87 aa8.59□□□□□ -1.03
USHBP1-208ENST00000598309 M0R2T5 61 aa8.57□□□□□ -1.04
USHBP1-208ENST00000598309 LORP23490 312 aaPredicted RBP8.57□□□□□ -1.04
USHBP1-208ENST00000598309 KRTAP10-6P60371 365 aaPredicted RBP8.57□□□□□ -1.04
USHBP1-208ENST00000598309 FLGP20930 4061 aaPredicted RBP8.54□□□□□ -1.04
USHBP1-208ENST00000598309 C9orf118A6NHY6 69 aa8.54□□□□□ -1.04
USHBP1-208ENST00000598309 C14orf132Q9NPU4 83 aa8.54□□□□□ -1.04
USHBP1-208ENST00000598309 NDUFB1O75438 58 aa8.51□□□□□ -1.05
USHBP1-208ENST00000598309 H3BT86 120 aa8.5□□□□□ -1.05
USHBP1-208ENST00000598309 TAX1BP3O14907 124 aa8.5□□□□□ -1.05
USHBP1-208ENST00000598309 KRTAP9-6A0A140TA67 174 aa8.49□□□□□ -1.05
USHBP1-208ENST00000598309 A0A1W2PPM0 123 aa8.49□□□□□ -1.05
USHBP1-208ENST00000598309 A8MWP4 228 aa8.49□□□□□ -1.05
USHBP1-208ENST00000598309 Q8N9P0 234 aaPredicted RBP8.44□□□□□ -1.06
USHBP1-208ENST00000598309 ZCCHC13Q8WW36 166 aaKnown RBP8.44□□□□□ -1.06
USHBP1-208ENST00000598309 IGKV3D-7A0A0C4DH55 119 aa8.43□□□□□ -1.06
USHBP1-208ENST00000598309 NREPQ16612 68 aa8.43□□□□□ -1.06
USHBP1-208ENST00000598309 C8orf17Q9NRJ1 99 aa8.43□□□□□ -1.06
USHBP1-208ENST00000598309 HRES1P13985 223 aa8.42□□□□□ -1.06
USHBP1-208ENST00000598309 MPLKIPQ8TAP9 179 aa8.42□□□□□ -1.06
USHBP1-208ENST00000598309 MTURNQ8N3F0 131 aa8.41□□□□□ -1.06
USHBP1-208ENST00000598309 RBM12B-AS1Q9P1G2 102 aa8.41□□□□□ -1.06
USHBP1-208ENST00000598309 PRR15Q8IV56 129 aa8.4□□□□□ -1.06
USHBP1-208ENST00000598309 FAM236DA0A1B0GTK5 79 aa8.39□□□□□ -1.07
USHBP1-208ENST00000598309 FAM236CP0DP71 79 aa8.39□□□□□ -1.07
USHBP1-208ENST00000598309 SPCS1Q9Y6A9 102 aa8.38□□□□□ -1.07
USHBP1-208ENST00000598309 Q6ZVQ6 151 aa8.37□□□□□ -1.07
USHBP1-208ENST00000598309 COL5A1-AS1Q5SY13 56 aa8.34□□□□□ -1.07
USHBP1-208ENST00000598309 MMP24-AS1A0A0U1RRL7 71 aa8.33□□□□□ -1.08
USHBP1-208ENST00000598309 SPINK7P58062 85 aa8.33□□□□□ -1.08
USHBP1-208ENST00000598309 TMEM254Q8TBM7 123 aa8.33□□□□□ -1.08
USHBP1-208ENST00000598309 CRCT1Q9UGL9 99 aa8.33□□□□□ -1.08
USHBP1-208ENST00000598309 K7EQZ3 153 aa8.3□□□□□ -1.08
USHBP1-208ENST00000598309 SMCPP49901 116 aaPredicted RBP8.3□□□□□ -1.08
USHBP1-208ENST00000598309 MRPL34Q9BQ48 92 aaKnown RBP8.3□□□□□ -1.08
USHBP1-208ENST00000598309 BPY2O14599 106 aa8.29□□□□□ -1.08
USHBP1-208ENST00000598309 KRTAP9-8Q9BYQ0 159 aa8.28□□□□□ -1.08
USHBP1-208ENST00000598309 hDV103S1A0JD37 113 aa8.27□□□□□ -1.09
USHBP1-208ENST00000598309 K7EP34 96 aa8.26□□□□□ -1.09
USHBP1-208ENST00000598309 PRO0461Q9UI25 63 aa8.26□□□□□ -1.09
USHBP1-208ENST00000598309 WFDC13Q8IUB5 93 aa8.22□□□□□ -1.09
USHBP1-208ENST00000598309 FSIP2Q5CZC0 6907 aa8.22□□□□□ -1.09
USHBP1-208ENST00000598309 NDUFS5O43920 106 aa8.2□□□□□ -1.1
USHBP1-208ENST00000598309 MT2AP02795 61 aa8.17□□□□□ -1.1
USHBP1-208ENST00000598309 GTF2H5Q6ZYL4 71 aa8.17□□□□□ -1.1
USHBP1-208ENST00000598309 Q8N9L7 120 aa8.17□□□□□ -1.1
USHBP1-208ENST00000598309 UBL5Q9BZL1 73 aa8.17□□□□□ -1.1
USHBP1-208ENST00000598309 CASC2Q6XLA1 102 aa8.16□□□□□ -1.1
USHBP1-208ENST00000598309 LINC00846Q9NV44 126 aa8.16□□□□□ -1.1
USHBP1-208ENST00000598309 MT1FP04733 61 aa8.11□□□□□ -1.11
USHBP1-208ENST00000598309 Q5W150 140 aa8.11□□□□□ -1.11
USHBP1-208ENST00000598309 PCP4L1A6NKN8 68 aa8.1□□□□□ -1.11
USHBP1-208ENST00000598309 HCG22E2RYF7 251 aa8.1□□□□□ -1.11
USHBP1-208ENST00000598309 F8W1H4 67 aa8.1□□□□□ -1.11
USHBP1-208ENST00000598309 C7orf65Q6ZTY9 151 aa8.1□□□□□ -1.11
USHBP1-208ENST00000598309 CXCL6P80162 114 aa8.09□□□□□ -1.11
USHBP1-208ENST00000598309 IGKV2D-30A0A075B6S6 120 aa8.08□□□□□ -1.12
USHBP1-208ENST00000598309 IGKV2-30P06310 120 aa8.08□□□□□ -1.12
USHBP1-208ENST00000598309 KRTAP10-10P60014 251 aa8.06□□□□□ -1.12
USHBP1-208ENST00000598309 ETDBQ3ZM63 59 aa8.05□□□□□ -1.12
USHBP1-208ENST00000598309 H1FX-AS1Q4G0G2 97 aa8.04□□□□□ -1.12
USHBP1-208ENST00000598309 KRTAP9-3Q9BYQ3 159 aa8.02□□□□□ -1.13
USHBP1-208ENST00000598309 LCE2BO14633 110 aa7.96□□□□□ -1.14
USHBP1-208ENST00000598309 TP53AIP1Q9HCN2 124 aa7.95□□□□□ -1.14
USHBP1-208ENST00000598309 USH2AO75445 5202 aa7.95□□□□□ -1.14
USHBP1-208ENST00000598309 C4orf26Q17RF5 130 aa7.93□□□□□ -1.14
USHBP1-208ENST00000598309 ACYP1P07311 99 aa7.91□□□□□ -1.14
USHBP1-208ENST00000598309 FAM240AA0A1B0GVK7 77 aa7.89□□□□□ -1.15
USHBP1-208ENST00000598309 SSPOA2VEC9 5147 aa7.87□□□□□ -1.15
USHBP1-208ENST00000598309 ATP5EP2Q5VTU8 51 aa7.85□□□□□ -1.15
USHBP1-208ENST00000598309 KRTAP3-1Q9BYR8 98 aa7.81□□□□□ -1.16
USHBP1-208ENST00000598309 KRTAP19-1Q8IUB9 90 aa7.8□□□□□ -1.16
USHBP1-208ENST00000598309 C1orf64Q8NEQ6 169 aa7.8□□□□□ -1.16
USHBP1-208ENST00000598309 S4R3F8 94 aa7.77□□□□□ -1.17
USHBP1-208ENST00000598309 TRAV22A0A0B4J277 110 aa7.76□□□□□ -1.17
USHBP1-208ENST00000598309 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.76□□□□□ -1.17
USHBP1-208ENST00000598309 CYP4F30PQ9H0H9 118 aa7.76□□□□□ -1.17
USHBP1-208ENST00000598309 LOC101927531A0A1B0GV80 90 aa7.74□□□□□ -1.17
USHBP1-208ENST00000598309 HIST1H4AP62805 103 aaKnown RBP7.74□□□□□ -1.17
USHBP1-208ENST00000598309 C5orf47Q569G3 176 aa7.74□□□□□ -1.17
USHBP1-208ENST00000598309 KRTAP19-6Q3LI70 58 aa7.71□□□□□ -1.18
USHBP1-208ENST00000598309 CSAG1Q6PB30 78 aa7.71□□□□□ -1.18
USHBP1-208ENST00000598309 LINC00643Q86TS7 51 aa7.71□□□□□ -1.18
USHBP1-208ENST00000598309 UQCRQO14949 82 aa7.7□□□□□ -1.18
USHBP1-208ENST00000598309 LCA10Q71F78 164 aa7.7□□□□□ -1.18
USHBP1-208ENST00000598309 FCGBPQ9Y6R7 5405 aaPredicted RBP7.7□□□□□ -1.18
USHBP1-208ENST00000598309 A0A1B0GV90 55 aa7.67□□□□□ -1.18
USHBP1-208ENST00000598309 ATOX1O00244 68 aa7.67□□□□□ -1.18
USHBP1-208ENST00000598309 FAM236AA0A1B0GUQ0 79 aa7.64□□□□□ -1.19
USHBP1-208ENST00000598309 FAM236BA0A1B0GV22 79 aa7.64□□□□□ -1.19
USHBP1-208ENST00000598309 H0Y9P7 68 aa7.64□□□□□ -1.19
USHBP1-208ENST00000598309 A0A087WVE0 104 aa7.63□□□□□ -1.19
USHBP1-208ENST00000598309 KRTAP9-7A8MTY7 169 aa7.63□□□□□ -1.19
USHBP1-208ENST00000598309 KRTAP3-3Q9BYR6 98 aa7.6□□□□□ -1.19
USHBP1-208ENST00000598309 J3QR89 54 aa7.55□□□□□ -1.2
USHBP1-208ENST00000598309 SPRR2GQ9BYE4 73 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms