RNA–Protein interactions for RNA: ENST00000594104.1

VRK3-208, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,197 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-208ENST00000594104 C1orf195Q5TG92 126 aa6.88□□□□□ -1.31
VRK3-208ENST00000594104 LYSTQ99698 3801 aa6.88□□□□□ -1.31
VRK3-208ENST00000594104 ANAPC11Q9NYG5 84 aa6.88□□□□□ -1.31
VRK3-208ENST00000594104 DNAH17Q9UFH2 4485 aa6.88□□□□□ -1.31
VRK3-208ENST00000594104 PRKDCP78527 4128 aaKnown RBP6.88□□□□□ -1.31
VRK3-208ENST00000594104 FAM229BQ4G0N7 80 aa6.88□□□□□ -1.31
VRK3-208ENST00000594104 MEGF8Q7Z7M0 2845 aa6.88□□□□□ -1.31
VRK3-208ENST00000594104 SRRM2Q9UQ35 2752 aaKnown RBP6.87□□□□□ -1.31
VRK3-208ENST00000594104 MRPL34Q9BQ48 92 aaKnown RBP6.87□□□□□ -1.31
VRK3-208ENST00000594104 STARD9Q9P2P6 4700 aa6.87□□□□□ -1.31
VRK3-208ENST00000594104 IGHV6-1A0A0B4J1U7 121 aa6.86□□□□□ -1.31
VRK3-208ENST00000594104 KRTAP10-2P60368 255 aa6.86□□□□□ -1.31
VRK3-208ENST00000594104 C8orf87E5RJ46 101 aa6.85□□□□□ -1.31
VRK3-208ENST00000594104 PRO0628Q9UI54 55 aa6.85□□□□□ -1.31
VRK3-208ENST00000594104 Q1T7F1 81 aa6.85□□□□□ -1.31
VRK3-208ENST00000594104 IGLV7-46A0A075B6I9 117 aa6.83□□□□□ -1.32
VRK3-208ENST00000594104 DNAH6Q9C0G6 4158 aa6.82□□□□□ -1.32
VRK3-208ENST00000594104 KRTAP10-1P60331 282 aa6.81□□□□□ -1.32
VRK3-208ENST00000594104 DNAH2Q9P225 4427 aa6.8□□□□□ -1.32
VRK3-208ENST00000594104 NDUFS5O43920 106 aa6.79□□□□□ -1.32
VRK3-208ENST00000594104 PRR4Q16378 134 aa6.78□□□□□ -1.32
VRK3-208ENST00000594104 LOC101927531A0A1B0GV80 90 aa6.78□□□□□ -1.32
VRK3-208ENST00000594104 HECTD4Q9Y4D8 3996 aa6.78□□□□□ -1.32
VRK3-208ENST00000594104 A0A087X002 238 aa6.76□□□□□ -1.33
VRK3-208ENST00000594104 NOTCH2NLQ7Z3S9 236 aa6.76□□□□□ -1.33
VRK3-208ENST00000594104 KRTAP13-2Q52LG2 175 aa6.75□□□□□ -1.33
VRK3-208ENST00000594104 SPINK6Q6UWN8 80 aa6.75□□□□□ -1.33
VRK3-208ENST00000594104 LIMD2Q9BT23 127 aa6.75□□□□□ -1.33
VRK3-208ENST00000594104 TGP01266 2768 aa6.75□□□□□ -1.33
VRK3-208ENST00000594104 FBN3Q75N90 2809 aa6.74□□□□□ -1.33
VRK3-208ENST00000594104 ALMS1Q8TCU4 4167 aa6.73□□□□□ -1.33
VRK3-208ENST00000594104 DNAH8Q96JB1 4490 aa6.73□□□□□ -1.33
VRK3-208ENST00000594104 LINC00313P59037 77 aa6.73□□□□□ -1.33
VRK3-208ENST00000594104 KRTAP13-3Q3SY46 172 aa6.73□□□□□ -1.33
VRK3-208ENST00000594104 KRTAP1-4P0C5Y4 121 aa6.72□□□□□ -1.33
VRK3-208ENST00000594104 PCOTHQ58A44 107 aa6.71□□□□□ -1.34
VRK3-208ENST00000594104 COA5Q86WW8 74 aa6.71□□□□□ -1.34
VRK3-208ENST00000594104 Q8N9P0 234 aaPredicted RBP6.71□□□□□ -1.34
VRK3-208ENST00000594104 KMT2AQ03164 3969 aa6.7□□□□□ -1.34
VRK3-208ENST00000594104 SPINK1P00995 79 aa6.68□□□□□ -1.34
VRK3-208ENST00000594104 Q5W150 140 aa6.68□□□□□ -1.34
VRK3-208ENST00000594104 RPS29P62273 56 aaKnown RBP6.67□□□□□ -1.34
VRK3-208ENST00000594104 BRK1Q8WUW1 75 aa6.66□□□□□ -1.34
VRK3-208ENST00000594104 RBM12B-AS1Q9P1G2 102 aa6.66□□□□□ -1.34
VRK3-208ENST00000594104 DNHD1Q96M86 4753 aa6.66□□□□□ -1.34
VRK3-208ENST00000594104 PSPHP1O15172 72 aa6.65□□□□□ -1.34
VRK3-208ENST00000594104 SPAG11AQ6PDA7 123 aa6.65□□□□□ -1.35
VRK3-208ENST00000594104 TYMSOSQ8TAI1 123 aa6.65□□□□□ -1.35
VRK3-208ENST00000594104 DNAH11Q96DT5 4516 aa6.64□□□□□ -1.35
VRK3-208ENST00000594104 PMAIP1Q13794 54 aa6.63□□□□□ -1.35
VRK3-208ENST00000594104 KRTAP16-1A8MUX0 517 aa6.62□□□□□ -1.35
VRK3-208ENST00000594104 HRES1P13985 223 aa6.62□□□□□ -1.35
VRK3-208ENST00000594104 A8MUN3 132 aa6.61□□□□□ -1.35
VRK3-208ENST00000594104 ACYP2P14621 99 aa6.61□□□□□ -1.35
VRK3-208ENST00000594104 IGKV2-30P06310 120 aa6.6□□□□□ -1.35
VRK3-208ENST00000594104 Q5VV11 94 aa6.59□□□□□ -1.35
VRK3-208ENST00000594104 LINC01558Q9Y6Z2 57 aa6.59□□□□□ -1.35
VRK3-208ENST00000594104 DNAH5Q8TE73 4624 aa6.59□□□□□ -1.35
VRK3-208ENST00000594104 FRAS1Q86XX4 4008 aa6.57□□□□□ -1.36
VRK3-208ENST00000594104 DMAC1Q96GE9 116 aa6.57□□□□□ -1.36
VRK3-208ENST00000594104 LINC00304Q8N9R0 145 aa6.57□□□□□ -1.36
VRK3-208ENST00000594104 PKD1P98161 4303 aa6.56□□□□□ -1.36
VRK3-208ENST00000594104 Q8N1X5 172 aa6.56□□□□□ -1.36
VRK3-208ENST00000594104 PRR15LQ9BU68 103 aa6.56□□□□□ -1.36
VRK3-208ENST00000594104 A0A1B0GVY2 172 aa6.55□□□□□ -1.36
VRK3-208ENST00000594104 CHKB-CPT1BH3BT56 60 aa6.54□□□□□ -1.36
VRK3-208ENST00000594104 FAT2Q9NYQ8 4349 aa6.53□□□□□ -1.36
VRK3-208ENST00000594104 LRP1BQ9NZR2 4599 aa6.53□□□□□ -1.36
VRK3-208ENST00000594104 KRTAP10-4P60372 401 aaPredicted RBP6.47□□□□□ -1.37
VRK3-208ENST00000594104 RETNLBQ9BQ08 111 aa6.47□□□□□ -1.37
VRK3-208ENST00000594104 A6NED7 52 aa6.45□□□□□ -1.38
VRK3-208ENST00000594104 IGKV2D-30A0A075B6S6 120 aa6.44□□□□□ -1.38
VRK3-208ENST00000594104 SMR3BP02814 79 aaPredicted RBP6.44□□□□□ -1.38
VRK3-208ENST00000594104 C7orf65Q6ZTY9 151 aa6.44□□□□□ -1.38
VRK3-208ENST00000594104 CDC42SE1Q9NRR8 79 aa6.42□□□□□ -1.38
VRK3-208ENST00000594104 ATP11AUNQ6ZP68 121 aa6.42□□□□□ -1.38
VRK3-208ENST00000594104 A8MUU9 505 aa6.41□□□□□ -1.38
VRK3-208ENST00000594104 C20orf166-AS1Q96NR2 134 aa6.41□□□□□ -1.38
VRK3-208ENST00000594104 HYDINQ4G0P3 5121 aa6.4□□□□□ -1.38
VRK3-208ENST00000594104 SACSQ9NZJ4 4579 aa6.4□□□□□ -1.39
VRK3-208ENST00000594104 VPS13BQ7Z7G8 4022 aa6.4□□□□□ -1.39
VRK3-208ENST00000594104 LCA10Q71F78 164 aa6.39□□□□□ -1.39
VRK3-208ENST00000594104 KRTAP19-4Q3LI73 84 aa6.37□□□□□ -1.39
VRK3-208ENST00000594104 A0A1B0GU69 56 aa6.34□□□□□ -1.39
VRK3-208ENST00000594104 KRTAP15-1Q3LI76 137 aa6.34□□□□□ -1.4
VRK3-208ENST00000594104 SPINK7P58062 85 aa6.33□□□□□ -1.4
VRK3-208ENST00000594104 SPTSSBQ8NFR3 76 aa6.33□□□□□ -1.4
VRK3-208ENST00000594104 DYNC1H1Q14204 4646 aaKnown RBP6.33□□□□□ -1.4
VRK3-208ENST00000594104 A8MU10 97 aa6.31□□□□□ -1.4
VRK3-208ENST00000594104 C9orf92A6NGG3 77 aa6.29□□□□□ -1.4
VRK3-208ENST00000594104 KRTAP10-8P60410 259 aa6.28□□□□□ -1.4
VRK3-208ENST00000594104 CAMK2N1Q7Z7J9 78 aa6.28□□□□□ -1.4
VRK3-208ENST00000594104 PKHD1P08F94 4074 aa6.26□□□□□ -1.41
VRK3-208ENST00000594104 SPATA8Q6RVD6 105 aa6.25□□□□□ -1.41
VRK3-208ENST00000594104 A6NN06 94 aa6.25□□□□□ -1.41
VRK3-208ENST00000594104 UQCR11O14957 56 aa6.24□□□□□ -1.41
VRK3-208ENST00000594104 PKHD1L1Q86WI1 4243 aa6.24□□□□□ -1.41
VRK3-208ENST00000594104 APOBP04114 4563 aaKnown RBP6.24□□□□□ -1.41
VRK3-208ENST00000594104 Q5VSD8 79 aa6.2□□□□□ -1.42
VRK3-208ENST00000594104 KTN1-AS1Q86SY8 53 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms