RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 A8MUU9 505 aa7.69□□□□□ -1.18
VRK3-206ENST00000594090 LINC00313P59037 77 aa7.69□□□□□ -1.18
VRK3-206ENST00000594090 ATP11AUNQ6ZP68 121 aa7.69□□□□□ -1.18
VRK3-206ENST00000594090 IGHV6-1A0A0B4J1U7 121 aa7.67□□□□□ -1.18
VRK3-206ENST00000594090 NOTCH2NLQ7Z3S9 236 aa7.67□□□□□ -1.18
VRK3-206ENST00000594090 KRTAP16-1A8MUX0 517 aa7.66□□□□□ -1.18
VRK3-206ENST00000594090 J3KT08 172 aa7.66□□□□□ -1.18
VRK3-206ENST00000594090 KRTAP19-2Q3LHN2 52 aa7.65□□□□□ -1.18
VRK3-206ENST00000594090 A0A1B0GVX0 72 aa7.64□□□□□ -1.19
VRK3-206ENST00000594090 LCE2CQ5TA81 110 aa7.64□□□□□ -1.19
VRK3-206ENST00000594090 C8orf87E5RJ46 101 aa7.62□□□□□ -1.19
VRK3-206ENST00000594090 SMCPP49901 116 aaPredicted RBP7.61□□□□□ -1.19
VRK3-206ENST00000594090 K7EP34 96 aa7.61□□□□□ -1.19
VRK3-206ENST00000594090 NDUFB1O75438 58 aa7.59□□□□□ -1.19
VRK3-206ENST00000594090 A8MWP4 228 aa7.58□□□□□ -1.2
VRK3-206ENST00000594090 NREPQ16612 68 aa7.58□□□□□ -1.2
VRK3-206ENST00000594090 PRO0461Q9UI25 63 aa7.58□□□□□ -1.2
VRK3-206ENST00000594090 IGKV3D-7A0A0C4DH55 119 aa7.55□□□□□ -1.2
VRK3-206ENST00000594090 MT1HP80294 61 aa7.53□□□□□ -1.2
VRK3-206ENST00000594090 C8orf17Q9NRJ1 99 aa7.53□□□□□ -1.2
VRK3-206ENST00000594090 COX6B2Q6YFQ2 88 aa7.52□□□□□ -1.2
VRK3-206ENST00000594090 GTF2H5Q6ZYL4 71 aa7.52□□□□□ -1.2
VRK3-206ENST00000594090 PRR15Q8IV56 129 aa7.52□□□□□ -1.21
VRK3-206ENST00000594090 Q8N9P0 234 aaPredicted RBP7.49□□□□□ -1.21
VRK3-206ENST00000594090 Q6ZVQ6 151 aa7.47□□□□□ -1.21
VRK3-206ENST00000594090 K7EQZ3 153 aa7.46□□□□□ -1.21
VRK3-206ENST00000594090 BPY2O14599 106 aa7.46□□□□□ -1.21
VRK3-206ENST00000594090 MMP24-AS1A0A0U1RRL7 71 aa7.45□□□□□ -1.22
VRK3-206ENST00000594090 F8W1H4 67 aa7.45□□□□□ -1.22
VRK3-206ENST00000594090 ZCCHC13Q8WW36 166 aaKnown RBP7.45□□□□□ -1.22
VRK3-206ENST00000594090 TMEM254Q8TBM7 123 aa7.43□□□□□ -1.22
VRK3-206ENST00000594090 LINC00846Q9NV44 126 aa7.43□□□□□ -1.22
VRK3-206ENST00000594090 MRPL34Q9BQ48 92 aaKnown RBP7.42□□□□□ -1.22
VRK3-206ENST00000594090 ETDBQ3ZM63 59 aa7.41□□□□□ -1.22
VRK3-206ENST00000594090 hDV103S1A0JD37 113 aa7.4□□□□□ -1.22
VRK3-206ENST00000594090 HRES1P13985 223 aa7.4□□□□□ -1.22
VRK3-206ENST00000594090 UBL5Q9BZL1 73 aa7.4□□□□□ -1.22
VRK3-206ENST00000594090 FLGP20930 4061 aaPredicted RBP7.4□□□□□ -1.22
VRK3-206ENST00000594090 A0A1B0GV90 55 aa7.39□□□□□ -1.23
VRK3-206ENST00000594090 M0R2T5 61 aa7.39□□□□□ -1.23
VRK3-206ENST00000594090 Q8N9L7 120 aa7.39□□□□□ -1.23
VRK3-206ENST00000594090 KRTAP9-2Q9BYQ4 174 aa7.38□□□□□ -1.23
VRK3-206ENST00000594090 KRTAP10-6P60371 365 aaPredicted RBP7.36□□□□□ -1.23
VRK3-206ENST00000594090 MPLKIPQ8TAP9 179 aa7.36□□□□□ -1.23
VRK3-206ENST00000594090 LORP23490 312 aaPredicted RBP7.35□□□□□ -1.23
VRK3-206ENST00000594090 SPINK7P58062 85 aa7.35□□□□□ -1.23
VRK3-206ENST00000594090 RBM12B-AS1Q9P1G2 102 aa7.35□□□□□ -1.23
VRK3-206ENST00000594090 FAM236DA0A1B0GTK5 79 aa7.34□□□□□ -1.23
VRK3-206ENST00000594090 NDUFS5O43920 106 aa7.34□□□□□ -1.23
VRK3-206ENST00000594090 FAM236CP0DP71 79 aa7.34□□□□□ -1.23
VRK3-206ENST00000594090 WFDC13Q8IUB5 93 aa7.34□□□□□ -1.23
VRK3-206ENST00000594090 CASC2Q6XLA1 102 aa7.32□□□□□ -1.24
VRK3-206ENST00000594090 HCG22E2RYF7 251 aa7.27□□□□□ -1.24
VRK3-206ENST00000594090 CXCL6P80162 114 aa7.27□□□□□ -1.25
VRK3-206ENST00000594090 LCE2DQ5TA82 110 aaPredicted RBP7.27□□□□□ -1.25
VRK3-206ENST00000594090 Q5W150 140 aa7.25□□□□□ -1.25
VRK3-206ENST00000594090 ACYP1P07311 99 aa7.23□□□□□ -1.25
VRK3-206ENST00000594090 FAM240AA0A1B0GVK7 77 aa7.22□□□□□ -1.25
VRK3-206ENST00000594090 IGKV2D-30A0A075B6S6 120 aa7.19□□□□□ -1.26
VRK3-206ENST00000594090 IGKV2-30P06310 120 aa7.19□□□□□ -1.26
VRK3-206ENST00000594090 C7orf65Q6ZTY9 151 aa7.19□□□□□ -1.26
VRK3-206ENST00000594090 KRTAP9-8Q9BYQ0 159 aa7.15□□□□□ -1.27
VRK3-206ENST00000594090 ATP5EP2Q5VTU8 51 aa7.14□□□□□ -1.27
VRK3-206ENST00000594090 TP53AIP1Q9HCN2 124 aa7.11□□□□□ -1.27
VRK3-206ENST00000594090 KRTAP9-6A0A140TA67 174 aa7.08□□□□□ -1.28
VRK3-206ENST00000594090 H1FX-AS1Q4G0G2 97 aa7.08□□□□□ -1.28
VRK3-206ENST00000594090 MT2AP02795 61 aa7.07□□□□□ -1.28
VRK3-206ENST00000594090 HIST1H4AP62805 103 aaKnown RBP7.07□□□□□ -1.28
VRK3-206ENST00000594090 LINC00643Q86TS7 51 aa7.07□□□□□ -1.28
VRK3-206ENST00000594090 C4orf26Q17RF5 130 aa7.05□□□□□ -1.28
VRK3-206ENST00000594090 MT1FP04733 61 aa7.01□□□□□ -1.29
VRK3-206ENST00000594090 A0A087WVE0 104 aa7□□□□□ -1.29
VRK3-206ENST00000594090 TRAV22A0A0B4J277 110 aa7□□□□□ -1.29
VRK3-206ENST00000594090 J3QR89 54 aa7□□□□□ -1.29
VRK3-206ENST00000594090 CRCT1Q9UGL9 99 aa7□□□□□ -1.29
VRK3-206ENST00000594090 KRTAP10-10P60014 251 aa6.97□□□□□ -1.29
VRK3-206ENST00000594090 UQCRQO14949 82 aa6.95□□□□□ -1.3
VRK3-206ENST00000594090 CYP4F30PQ9H0H9 118 aa6.95□□□□□ -1.3
VRK3-206ENST00000594090 C1orf64Q8NEQ6 169 aa6.94□□□□□ -1.3
VRK3-206ENST00000594090 KRTAP3-1Q9BYR8 98 aa6.94□□□□□ -1.3
VRK3-206ENST00000594090 LOC101927531A0A1B0GV80 90 aa6.93□□□□□ -1.3
VRK3-206ENST00000594090 KRTAP9-3Q9BYQ3 159 aa6.93□□□□□ -1.3
VRK3-206ENST00000594090 H0Y9P7 68 aa6.92□□□□□ -1.3
VRK3-206ENST00000594090 K7ERU9 68 aa6.92□□□□□ -1.3
VRK3-206ENST00000594090 ATOX1O00244 68 aa6.9□□□□□ -1.31
VRK3-206ENST00000594090 S4R3F8 94 aa6.88□□□□□ -1.31
VRK3-206ENST00000594090 FSIP2Q5CZC0 6907 aa6.86□□□□□ -1.31
VRK3-206ENST00000594090 OCR1Q9BZK8 76 aa6.86□□□□□ -1.31
VRK3-206ENST00000594090 LCE2BO14633 110 aa6.85□□□□□ -1.31
VRK3-206ENST00000594090 C5orf47Q569G3 176 aa6.84□□□□□ -1.31
VRK3-206ENST00000594090 LCA10Q71F78 164 aa6.84□□□□□ -1.32
VRK3-206ENST00000594090 LINC00208Q96KT6 92 aa6.81□□□□□ -1.32
VRK3-206ENST00000594090 MP68P56378 58 aa6.79□□□□□ -1.32
VRK3-206ENST00000594090 CSAG1Q6PB30 78 aa6.78□□□□□ -1.32
VRK3-206ENST00000594090 SCGB1A1P11684 91 aa6.76□□□□□ -1.33
VRK3-206ENST00000594090 KLKP1Q107X0 134 aa6.76□□□□□ -1.33
VRK3-206ENST00000594090 KRTAP3-3Q9BYR6 98 aa6.76□□□□□ -1.33
VRK3-206ENST00000594090 IMUPQ9GZP8 106 aa6.76□□□□□ -1.33
VRK3-206ENST00000594090 MT-ATP8P03928 68 aa6.75□□□□□ -1.33
VRK3-206ENST00000594090 H3BPC8 53 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms