RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 PCOTHQ58A44 107 aa6.53□□□□□ -1.36
VPS4B-206ENST00000591475 ZNF706Q9Y5V0 76 aaPredicted RBP6.53□□□□□ -1.36
VPS4B-206ENST00000591475 RTL8CO15255 209 aa6.52□□□□□ -1.37
VPS4B-206ENST00000591475 A0A1B0GVX0 72 aa6.52□□□□□ -1.37
VPS4B-206ENST00000591475 CD164Q04900 197 aa6.52□□□□□ -1.37
VPS4B-206ENST00000591475 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.52□□□□□ -1.37
VPS4B-206ENST00000591475 DNAH17Q9UFH2 4485 aa6.51□□□□□ -1.37
VPS4B-206ENST00000591475 IGHV6-1A0A0B4J1U7 121 aa6.51□□□□□ -1.37
VPS4B-206ENST00000591475 CDK2AP2O75956 126 aa6.51□□□□□ -1.37
VPS4B-206ENST00000591475 KMT2CQ8NEZ4 4911 aaKnown RBP6.51□□□□□ -1.37
VPS4B-206ENST00000591475 NDUFS5O43920 106 aa6.5□□□□□ -1.37
VPS4B-206ENST00000591475 FRAS1Q86XX4 4008 aa6.5□□□□□ -1.37
VPS4B-206ENST00000591475 Q75L30 129 aa6.5□□□□□ -1.37
VPS4B-206ENST00000591475 LOC101927531A0A1B0GV80 90 aa6.49□□□□□ -1.37
VPS4B-206ENST00000591475 MRPL34Q9BQ48 92 aaKnown RBP6.49□□□□□ -1.37
VPS4B-206ENST00000591475 A8MU10 97 aa6.48□□□□□ -1.37
VPS4B-206ENST00000591475 IGLV5-52A0A0A0MRZ9 124 aa6.47□□□□□ -1.37
VPS4B-206ENST00000591475 FAT2Q9NYQ8 4349 aa6.46□□□□□ -1.37
VPS4B-206ENST00000591475 PSORS1C2Q9UIG4 136 aa6.46□□□□□ -1.38
VPS4B-206ENST00000591475 A6NED7 52 aa6.45□□□□□ -1.38
VPS4B-206ENST00000591475 SEC61GP60059 68 aa6.45□□□□□ -1.38
VPS4B-206ENST00000591475 HECTD4Q9Y4D8 3996 aa6.45□□□□□ -1.38
VPS4B-206ENST00000591475 RYR2Q92736 4967 aa6.45□□□□□ -1.38
VPS4B-206ENST00000591475 LINC01558Q9Y6Z2 57 aa6.44□□□□□ -1.38
VPS4B-206ENST00000591475 ZNF861PO60384 105 aa6.43□□□□□ -1.38
VPS4B-206ENST00000591475 J3QL48 77 aa6.43□□□□□ -1.38
VPS4B-206ENST00000591475 SPAG11AQ6PDA7 123 aa6.43□□□□□ -1.38
VPS4B-206ENST00000591475 A0A087X002 238 aa6.42□□□□□ -1.38
VPS4B-206ENST00000591475 HRES1P13985 223 aa6.42□□□□□ -1.38
VPS4B-206ENST00000591475 KRTAP10-2P60368 255 aa6.42□□□□□ -1.38
VPS4B-206ENST00000591475 LCA10Q71F78 164 aa6.42□□□□□ -1.38
VPS4B-206ENST00000591475 NOTCH2NLQ7Z3S9 236 aa6.42□□□□□ -1.38
VPS4B-206ENST00000591475 ANAPC11Q9NYG5 84 aa6.42□□□□□ -1.38
VPS4B-206ENST00000591475 PLAC8Q9NZF1 115 aa6.42□□□□□ -1.38
VPS4B-206ENST00000591475 ATP11AUNQ6ZP68 121 aa6.42□□□□□ -1.38
VPS4B-206ENST00000591475 DNAH11Q96DT5 4516 aa6.41□□□□□ -1.38
VPS4B-206ENST00000591475 SPTSSBQ8NFR3 76 aa6.41□□□□□ -1.38
VPS4B-206ENST00000591475 PKD1P98161 4303 aa6.41□□□□□ -1.38
VPS4B-206ENST00000591475 CDC42SE1Q9NRR8 79 aa6.4□□□□□ -1.39
VPS4B-206ENST00000591475 DNAH8Q96JB1 4490 aa6.39□□□□□ -1.39
VPS4B-206ENST00000591475 SPINK6Q6UWN8 80 aa6.38□□□□□ -1.39
VPS4B-206ENST00000591475 DNAH5Q8TE73 4624 aa6.36□□□□□ -1.39
VPS4B-206ENST00000591475 RYR3Q15413 4870 aa6.36□□□□□ -1.39
VPS4B-206ENST00000591475 KRTAP13-3Q3SY46 172 aa6.36□□□□□ -1.39
VPS4B-206ENST00000591475 Q5W150 140 aa6.36□□□□□ -1.39
VPS4B-206ENST00000591475 KTN1-AS1Q86SY8 53 aa6.36□□□□□ -1.39
VPS4B-206ENST00000591475 PKHD1P08F94 4074 aa6.35□□□□□ -1.39
VPS4B-206ENST00000591475 A0A1B0GVY2 172 aa6.35□□□□□ -1.39
VPS4B-206ENST00000591475 CIRBP-AS1Q8TBR5 109 aa6.35□□□□□ -1.39
VPS4B-206ENST00000591475 C8orf87E5RJ46 101 aa6.34□□□□□ -1.39
VPS4B-206ENST00000591475 IGLV7-43P04211 117 aa6.34□□□□□ -1.39
VPS4B-206ENST00000591475 A6NN06 94 aa6.33□□□□□ -1.4
VPS4B-206ENST00000591475 KRTAP10-1P60331 282 aa6.33□□□□□ -1.4
VPS4B-206ENST00000591475 Q6ZSA8 131 aa6.33□□□□□ -1.4
VPS4B-206ENST00000591475 ACYP2P14621 99 aa6.32□□□□□ -1.4
VPS4B-206ENST00000591475 SPINK7P58062 85 aa6.32□□□□□ -1.4
VPS4B-206ENST00000591475 SSBP3-AS1Q7Z2R9 100 aa6.32□□□□□ -1.4
VPS4B-206ENST00000591475 PRR26Q8N8Z3 221 aa6.3□□□□□ -1.4
VPS4B-206ENST00000591475 LINC00313P59037 77 aa6.27□□□□□ -1.41
VPS4B-206ENST00000591475 FAM229AH3BQW9 127 aa6.26□□□□□ -1.41
VPS4B-206ENST00000591475 DMAC1Q96GE9 116 aa6.26□□□□□ -1.41
VPS4B-206ENST00000591475 LRP1BQ9NZR2 4599 aa6.26□□□□□ -1.41
VPS4B-206ENST00000591475 C7orf65Q6ZTY9 151 aa6.24□□□□□ -1.41
VPS4B-206ENST00000591475 DYNC1H1Q14204 4646 aaKnown RBP6.23□□□□□ -1.41
VPS4B-206ENST00000591475 IGKV2-30P06310 120 aa6.23□□□□□ -1.41
VPS4B-206ENST00000591475 RBM12B-AS1Q9P1G2 102 aa6.22□□□□□ -1.41
VPS4B-206ENST00000591475 RETNLBQ9BQ08 111 aa6.21□□□□□ -1.41
VPS4B-206ENST00000591475 A0A1B0GU69 56 aa6.19□□□□□ -1.42
VPS4B-206ENST00000591475 KRTAP13-2Q52LG2 175 aa6.18□□□□□ -1.42
VPS4B-206ENST00000591475 APOBP04114 4563 aaKnown RBP6.17□□□□□ -1.42
VPS4B-206ENST00000591475 KRTAP16-1A8MUX0 517 aa6.17□□□□□ -1.42
VPS4B-206ENST00000591475 VPS13BQ7Z7G8 4022 aa6.15□□□□□ -1.43
VPS4B-206ENST00000591475 SMR3BP02814 79 aaPredicted RBP6.13□□□□□ -1.43
VPS4B-206ENST00000591475 EPPK1P58107 5090 aaKnown RBP6.13□□□□□ -1.43
VPS4B-206ENST00000591475 IGKV2D-30A0A075B6S6 120 aa6.12□□□□□ -1.43
VPS4B-206ENST00000591475 SPATA8Q6RVD6 105 aa6.12□□□□□ -1.43
VPS4B-206ENST00000591475 BIRC6Q9NR09 4857 aa6.09□□□□□ -1.43
VPS4B-206ENST00000591475 FAT1Q14517 4588 aa6.09□□□□□ -1.43
VPS4B-206ENST00000591475 UQCR11O14957 56 aa6.09□□□□□ -1.43
VPS4B-206ENST00000591475 KRTAP1-4P0C5Y4 121 aa6.09□□□□□ -1.43
VPS4B-206ENST00000591475 MIR22HGQ0VDD5 57 aa6.08□□□□□ -1.44
VPS4B-206ENST00000591475 HSPG2P98160 4391 aa6.07□□□□□ -1.44
VPS4B-206ENST00000591475 LCE2BO14633 110 aa6.06□□□□□ -1.44
VPS4B-206ENST00000591475 PLA2G1BP04054 148 aaKnown RBP6.06□□□□□ -1.44
VPS4B-206ENST00000591475 KRTAP10-4P60372 401 aaPredicted RBP6.05□□□□□ -1.44
VPS4B-206ENST00000591475 RYR1P21817 5038 aa6.05□□□□□ -1.44
VPS4B-206ENST00000591475 SPINK1P00995 79 aa6.04□□□□□ -1.44
VPS4B-206ENST00000591475 KIAA1109Q2LD37 5005 aa6.04□□□□□ -1.44
VPS4B-206ENST00000591475 TYMSOSQ8TAI1 123 aa6.04□□□□□ -1.44
VPS4B-206ENST00000591475 Q5VSD8 79 aa6.02□□□□□ -1.45
VPS4B-206ENST00000591475 PRAC1Q96KF2 57 aa6.02□□□□□ -1.45
VPS4B-206ENST00000591475 ADM2Q7Z4H4 148 aa5.99□□□□□ -1.45
VPS4B-206ENST00000591475 Q8N1X5 172 aa5.99□□□□□ -1.45
VPS4B-206ENST00000591475 RPS29P62273 56 aaKnown RBP5.96□□□□□ -1.46
VPS4B-206ENST00000591475 LINC00304Q8N9R0 145 aa5.96□□□□□ -1.46
VPS4B-206ENST00000591475 KRTAP17-1Q9BYP8 105 aa5.94□□□□□ -1.46
VPS4B-206ENST00000591475 LINC01554Q52M75 96 aa5.9□□□□□ -1.47
VPS4B-206ENST00000591475 PKHD1L1Q86WI1 4243 aa5.9□□□□□ -1.47
VPS4B-206ENST00000591475 A8MUU9 505 aa5.87□□□□□ -1.47
VPS4B-206ENST00000591475 C20orf166-AS1Q96NR2 134 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms